Rhizomicrobiome

根瘤菌
  • 文章类型: Journal Article
    漂浮处理湿地(FTW)作为一种植物技术受到越来越多的关注,然而,关于植物物种和植物-微生物组相互作用的实际作用存在显著的研究空白。在这项研究中,在FTW微观世界中,在非生物应激源的影响下检查了木贼的养分吸收性能:As(3mg/L)和Pb(3mg/L)以及Cl-(300和800mg/L)在短期筛选实验中参考对照。对水溶液中营养物质的去除效率高,观察到TN高达88%,PO4-P高达93%。然而,As反应器中PO4-P的去除受到抑制,最大值为11%。高效去除铅和砷,分别达到98%和79%。同时,只有Pb有效地结合在根生物量中(达到51%)。植物根中0.5%的积累有限,表明微生物过程在其减少中起主要作用。通过16SrRNA基因扩增子测序分析了微观世界中微生物组的发育和结构,证明Pb是对特定细菌群的选择压力影响最大的因素。反过来,随着沙雷氏菌亚群的治疗发展,而Cl-处理导致根瘤菌组成与对照最相似。这项研究的结果表明,E.hyemale是在Pb污染水体中使用FTW的合适物种,同时能够承受周期性的盐度增加。E.hyemale在生物质中表现出低的As结合;然而,长期暴露可能会放大这种影响,因为作用缓慢,但有益的,根和芽吸收砷的机制。微生物组分析补充了对FTW性能机制以及所施加的应激因子对细菌结构和功能的影响的见解。
    Floating treatment wetlands (FTW) are receiving growing interest as a phyto-technology. However, there are significant research gaps regarding the actual role of plant species and plant-microbiome interactions. In this study, the nutrient uptake of Equisetum hyemale was examined in FTW microcosms under the influence of abiotic stressors: As (3 mg/L) and Pb (3 mg/L) as well as Cl- (300 and 800 mg/L) in reference to a control during a short screening experiment. High removal efficiency of nutrients in water solutions, up to 88 % for TN and 93 % for PO4-P, was observed. However, PO4-P removal was inhibited in the As reactor, with a maximum efficiency of only 11 %. Lead and As were removed with high efficiency, reaching 98 % and 79 % respectively. At the same time only Pb was effectively bound to root biomass, reaching up to 51 %. Limited As accumulation of 0.5 % in plant roots suggests that microbial processes play a major role in its reduction. The development and structure of microbiome in the microcosms was analysed by means of 16S rRNA gene amplicon sequencing, proving that Pb was the most influential factor in terms of selection pressure on specified bacterial groups. In the As treatment, the emergence of a Serratia subpopulation was observed, while the Cl- treatment preserved a rhizobiome composition most closely resembling the control. This study indicates that E. hyemale is a suitable species for use in FTWs treating Pb polluted water that at the same time is capable to withstand periodic increases in salinity. E. hyemale exhibits low As binding in biomass; however, extended exposure might amplify this effect because of the slow-acting, but beneficial, mechanism of As uptake by roots and shoots. Microbiome analysis complements insights into mechanisms of FTW performance and impact of stress factors on bacterial structure and functions.
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  • 文章类型: Journal Article
    可持续农业代表负责任地利用自然资源,同时维护自然环境的福祉。它包括保护环境的目标,促进经济增长,促进社会经济平等。为了实现人类的可持续发展,必须优先考虑可持续农业。实现这种转变的一个重要方法是广泛利用微生物,由于植物对共生微生物提供的有益功能的遗传依赖,它们起着至关重要的作用。本文综述了根际微生物群落的意义,也称为根瘤菌组(RM)。它是一个复杂的微生物群落,生活在根际,影响植物的生长和健康。它为其寄主植物提供了与植物生长相关的各种好处,包括生物防治,生物施肥,植物刺激,根治,抗应力,和其他有利的性质。然而,RM为可持续农业做出贡献的机制在很大程度上仍然未知。调查这种微生物种群为迈向可持续农业提供了重要的机会。因此,本研究旨在概述RM在可持续农业实践中的多样性和应用。最近,与根瘤菌研究及其在农业中的应用有关的各个领域的势头越来越大。这包括根际工程,合成微生物组应用,根瘤菌的基于代理的建模,和宏基因组学研究。所以,开发这些支持植物生长的有益微生物的生物制剂可以作为旨在实现新绿色革命的未来战略的有希望的解决方案。
    Sustainable agriculture represents the responsible utilization of natural resources while safeguarding the well-being of the natural environment. It encompasses the objectives of preserving the environment, fostering economic growth, and promoting socioeconomic equality. To achieve sustainable development for humanity, it is imperative to prioritize sustainable agriculture. One significant approach to achieving this transition is the extensive utilization of microbes, which play a crucial role due to the genetic reliance of plants on the beneficial functions provided by symbiotic microbes. This review focuses on the significance of rhizospheric microbial communities, also known as the rhizomicrobiome (RM). It is a complex community of microorganisms that live in the rhizosphere and influence the plant\'s growth and health. It provides its host plant with various benefits related to plant growth, including biocontrol, biofertilization, phytostimulation, rhizoremediation, stress resistance, and other advantageous properties. Yet, the mechanisms by which the RM contributes to sustainable agriculture remain largely unknown. Investigating this microbial population presents a significant opportunity to advance toward sustainable agriculture. Hence, this study aims to provide an overview of the diversity and applications of RM in sustainable agriculture practices. Lately, there has been growing momentum in various areas related to rhizobiome research and its application in agriculture. This includes rhizosphere engineering, synthetic microbiome application, agent-based modeling of the rhizobiome, and metagenomic studies. So, developing bioformulations of these beneficial microorganisms that support plant growth could serve as a promising solution for future strategies aimed at achieving a new green revolution.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    根际微生物群落提高了超累积剂在重金属植物修复中的有效性。然而,对尾矿坝的有限访问和对植物\'植物修复潜力的评估不足限制了本地累积剂的表征,阻碍当地整治工作的有效性。本研究评估了狼尾草的重金属螯合潜力,银合欢白头鱼,在加纳的Marlu和Pompora尾矿水坝中,Pterisvittata及其相关的根际微生物群落。结果表明,紫菜和白头菌中Cd(334.5±6.3mg/kg)和Fe(10,647.0±12.6mg/kg)的芽过度积累,分别。根际细菌群落分析揭示了重金属污染对细菌群落组成的影响,将Fe和Cd过度积累与芽孢杆菌联系起来,节杆菌,和鞘氨醇单胞菌物种。这项研究报告了根际细菌群落增强的白头菌和紫癜的超积累潜能,表明它们作为重金属污染土地的环境友好型修复过程的潜在应用。
    这项研究的新颖之处在于报告了加纳废弃金矿尾矿坝中快速生长的草本植物Leucaenaleufocephala和Puppureum的重金属积累潜力。大量的Cd(334.5mg/kg)和Fe(10,647.0mg/kg)在紫癜和白头菌芽中积累,表明它们的超积累潜能。根际重金属浓度水平影响细菌群落结构,随着芽孢杆菌的丰富,节杆菌,和鞘氨醇单胞菌与过度积累有关。这项研究的结果支持在重金属污染土地的植物修复中利用白头菌和紫菜。
    Rhizospheric microbial communities improve the effectiveness of hyperaccumulators in the phytoremediation of heavy metals. However, limited access to tailing dams and inadequate assessment of plants\' phytoremediation potential limit the characterization of native accumulators, hindering the effectiveness of local remediation efforts. This study evaluates the heavy metal sequestration potentials of Pennisetum purpureum, Leucaena leucocephala, and Pteris vittata and their associated rhizospheric microbial communities at the Marlu and Pompora tailing dams in Ghana. The results indicate shoot hyperaccumulation of Cd (334.5 ± 6.3 mg/kg) and Fe (10,647.0 ± 12.6 mg/kg) in P. purpureum and L. leucocephala, respectively. Analysis of rhizospheric bacterial communities revealed the impact of heavy metal contamination on bacterial community composition, associating Fe and Cd hyperaccumulation with Bacillus, Arthrobacter, and Sphingomonas species. This study reports the hyperaccumulation potentials of L. leucocephala and P. purpureum enhanced by associated rhizosphere bacterial communities, suggesting their potential application as an environmentally friendly remediation process of heavy metals contaminated lands.
    The novelty of this study is the report of the heavy metal accumulation potentials of the fast-growing herbaceous plants Leucaena leucocephala and Pennisetum purpureum at abandoned gold mine tailing dams in Ghana. Substantial amounts of Cd (334.5 mg/kg) and Fe (10,647.0 mg/kg) were accumulated in P. purpureum and L. leucocephala shoots, indicating their hyperaccumulation potentials. The concentration of heavy metal levels in the rhizosphere influenced the bacterial community structure, with the abundance of Bacillus, Arthrobacter, and Sphingomonas linked to hyperaccumulation. The outcome of this study supports the utilization of L. leucocephala and P. purpureum in the phytoremediation of lands contaminated with heavy metals.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    铁(Fe)是植物生长发育必需的营养元素之一。然而,铁纳米材料在调节豆科植物生长和固氮以及调节根瘤菌群中的潜在作用尚不为人所知。在这项研究中,我们报告说,10mgL-1是铁纳米颗粒(FeNPs)的最佳施用浓度,浸种加喷叶是FeNPs在苜蓿(MedicagosativaL.)中的最佳施用方法;FeNPs对苜蓿的生长和固氮能力具有比FeCl2更积极的影响;FeNPs增强了公司的强度和苜蓿根际真菌类群之间的竞争。这项工作提供了有关FeNPs对生长的调节机制的见解,固氮,以及豆科植物根际微生物群落的组成和功能以及FeNPs在农业系统中的潜在应用价值。
    Iron (Fe) is one of the essential nutrient elements for plant growth and development. However, the potential roles of iron nanomaterials in regulating growth and nitrogen fixation and modulating rhizomicrobiome in legume plants are poorly known. In this study, we reported that 10 mg L-1 is the optimal concentration for the application of iron nanoparticles (FeNPs) and seed soaking plus leaf spraying is the optimal application method of FeNPs in alfalfa (Medicago sativa L.); FeNPs had more positive effects on the growth and nitrogen fixation capability in alfalfa than FeCl2; FeNPs enhanced the intensity of corporations and competitions among rhizosphere fungal taxa of alfalfa. This work provides insights into the regulation mechanism of FeNPs on growth, nitrogen fixation, and the composition and function of rhizosphere microbial community in legume plants as well as the potential application value of FeNPs in agriculture system.
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  • 文章类型: Journal Article
    促进植物生长的根瘤菌(PGPR)是植物根瘤菌组的成员,通过增加植物的养分利用率来增强植物的生长和抗逆性。产生植物激素或其他次级代谢产物,刺激植物对非生物胁迫和病原体的防御反应,或固定氮。使用PGPR在对环境的影响最小的情况下增加作物产量是可持续且易于应用的替代品,可以替代高产品种生长所需的部分化学肥料和农药。长期以来,通过将PGPR用作农作物的商业接种剂,可以提高植物的健康和生产力。虽然结果参差不齐。植物-PGPR关系的建立需要伙伴之间化学信号和营养的交换,多胺(PAs)是一类重要的化合物,在植物-微生物相互作用中充当生理效应子和信号分子。在这次审查中,我们关注PAs在PGPR与植物相互作用中的作用。我们描述了PGPR的基本生态学以及PAs在其中的产生和功能以及与之相互作用的植物。我们分别检查了PAs在PGPR和植物中的代谢和作用以及它们之间的相互作用。最后,我们描述了一些未来研究的方向。
    Plant growth-promoting rhizobacteria (PGPR) are members of the plant rhizomicrobiome that enhance plant growth and stress resistance by increasing nutrient availability to the plant, producing phytohormones or other secondary metabolites, stimulating plant defense responses against abiotic stresses and pathogens, or fixing nitrogen. The use of PGPR to increase crop yield with minimal environmental impact is a sustainable and readily applicable replacement for a portion of chemical fertilizer and pesticides required for the growth of high-yielding varieties. Increased plant health and productivity have long been gained by applying PGPR as commercial inoculants to crops, although with uneven results. The establishment of plant-PGPR relationships requires the exchange of chemical signals and nutrients between the partners, and polyamines (PAs) are an important class of compounds that act as physiological effectors and signal molecules in plant-microbe interactions. In this review, we focus on the role of PAs in interactions between PGPR and plants. We describe the basic ecology of PGPR and the production and function of PAs in them and the plants with which they interact. We examine the metabolism and the roles of PAs in PGPR and plants individually and during their interaction with one another. Lastly, we describe some directions for future research.
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  • 文章类型: Journal Article
    植物不再被视为独立实体;相反,它们拥有多种促进植物生长的根际细菌(PGPR),可帮助它们获得养分,并且还可以提供恢复力。宿主植物以菌株特异性方式识别PGPR;因此,引入非靶向PGPR可能会产生不令人满意的作物产量。因此,开发一种微生物辅助贯叶连翘栽培技术,从该植物的高海拔印度西部喜马拉雅自然栖息地中分离出31种根际细菌,并在体外表征了多种植物生长促进属性。在31个根瘤菌分离物中,26产生0.59至85.29μgmL-1吲哚-3-乙酸,溶解15.77至71.43μgmL-1无机磷酸盐;21产生63.12至99.92%的铁载体单位,和15表现出103.60至1,296.42nmolα-酮丁酸酯mg-1蛋白h-11-氨基环丙烷-1-羧酸脱氨酶(ACCD)活性。基于优越的植物生长促进属性,在多温室条件下,进一步评估了八个具有统计学意义的多种PGPR,用于植物中植物生长促进试验。用KosakoniacowaniiHypNH10和RahnellavariigenaHypNH18处理的植物显示,大量的,最高的光合色素和性能,最终导致最高的生物量积累。比较基因组分析和综合基因组挖掘揭示了它们独特的遗传特征,如适应宿主植物的免疫系统和专门的代谢产物。此外,这些菌株含有几个通过营养获取调节直接和间接植物生长促进机制的功能基因,植物激素生产,和缓解压力。实质上,当前的研究认可菌株HypNH10和HypNH18作为微生物辅助的H.perforatum培养的有力候选物,通过突出其独特的基因组特征,这表明他们的一致,兼容性,以及与宿主的多方面有益相互作用,并支持在温室试验中观察到的优异的植物生长促进性能。IMPORTANCE贯叶连翘(圣约翰草)草药制剂是全球治疗抑郁症的最畅销产品之一。整个金丝桃供应的很大一部分来自野生采集,促使他们的自然林分迅速下降。作物种植似乎有利可图,尽管可耕地及其现有的根瘤菌组非常适合传统作物,它的突然引入会造成土壤微生物群失调。此外,传统的植物驯化程序增加了对农用化学品的依赖,可以降低相关根瘤菌的多样性和植物与植物生长促进微生物相互作用的能力,导致不令人满意的作物生产以及有害的环境影响。用与作物相关的有益根际细菌培养穿孔菌可以调和这些担忧。基于体外组合,体内植物促生长试验和植物促生长性状的计算机预测,在这里我们推荐两个与穿孔虫相关的PGPR,KosakoniacowaniiHypNH10和RahnellavariigenaHypNH18,以推断为H.perforatus可持续培养的功能性生物接种剂。
    Plants are no longer considered standalone entities; instead, they harbor a diverse community of plant growth-promoting rhizobacteria (PGPR) that aid them in nutrient acquisition and can also deliver resilience. Host plants recognize PGPR in a strain-specific manner; therefore, introducing untargeted PGPR might produce unsatisfactory crop yields. Consequently, to develop a microbe-assisted Hypericum perforatum L. cultivation technique, 31 rhizobacteria were isolated from the plant\'s high-altitude Indian western Himalayan natural habitat and in vitro characterized for multiple plant growth-promoting attributes. Among 31 rhizobacterial isolates, 26 produced 0.59 to 85.29 μg mL-1 indole-3-acetic acid and solubilized 15.77 to 71.43 μg mL-1 inorganic phosphate; 21 produced 63.12 to 99.92% siderophore units, and 15 exhibited 103.60 to 1,296.42 nmol α-ketobutyrate mg-1 protein h-1 1-aminocyclopropane-1-carboxylate deaminase (ACCD) activity. Based on superior plant growth-promoting attributes, eight statistically significant multifarious PGPR were further evaluated for an in planta plant growth-promotion assay under poly greenhouse conditions. Plants treated with Kosakonia cowanii HypNH10 and Rahnella variigena HypNH18 showed, by significant amounts, the highest photosynthetic pigments and performance, eventually leading to the highest biomass accumulation. Comparative genome analysis and comprehensive genome mining unraveled their unique genetic features, such as adaptation to the host plant\'s immune system and specialized metabolites. Moreover, the strains harbor several functional genes regulating direct and indirect plant growth-promotion mechanisms through nutrient acquisition, phytohormone production, and stress alleviation. In essence, the current study endorsed strains HypNH10 and HypNH18 as cogent candidates for microbe-assisted H. perforatum cultivation by highlighting their exclusive genomic signatures, which suggest their unison, compatibility, and multifaceted beneficial interactions with their host and support the excellent plant growth-promotion performance observed in the greenhouse trial. IMPORTANCE Hypericum perforatum L. (St. John\'s wort) herbal preparations are among the top-selling products to treat depression worldwide. A significant portion of the overall Hypericum supply is sourced through wild collection, prompting a rapid decline in their natural stands. Crop cultivation seems lucrative, although cultivable land and its existing rhizomicrobiome are well suited for traditional crops, and its sudden introduction can create soil microbiome dysbiosis. Also, the conventional plant domestication procedures with increased reliance on agrochemicals can reduce the diversity of the associated rhizomicrobiome and plants\' ability to interact with plant growth-promoting microorganisms, leading to unsatisfactory crop production alongside harmful environmental effects. Cultivating H. perforatum with crop-associated beneficial rhizobacteria can reconcile such concerns. Based on a combinatorial in vitro, in vivo plant growth-promotion assay and in silico prediction of plant growth-promoting traits, here we recommend two H. perforatum-associated PGPR, Kosakonia cowanii HypNH10 and Rahnella variigena HypNH18, to extrapolate as functional bioinoculants for H. perforatum sustainable cultivation.
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  • 文章类型: Journal Article
    根系分泌物在介导植物-植物和植物-根瘤菌相互作用中起关键作用,包括调节植物相关微生物的生化/生理方面,增强寄主植物的生长和恢复力。根系分泌物可以充当信号,以减少来自邻近植物的竞争,并招募/编排各种不同的根瘤菌群成员,以使寄主植物与其直接环境良好匹配。根系分泌物的产生是一个动态的关键过程,但是对它们促进的生物体间通讯所涉及的代谢物或代谢途径的理解有限。鉴于植物和相关根瘤菌组成员之间众所周知的共生关系,将根分泌物添加到微生物分离培养基中可能会允许一些目前无法培养的大部分根瘤菌群成员在体外生长。这将为根信号如何协调相关微生物提供新的见解,面对气候变化带来的挑战,将有利于农业生产,并将有助于可持续地为不断增长的全球人口提供食物。
    Root exudates play a key role in mediating plant-plant and plant-rhizomicrobiome interactions, including regulating biochemical/physiological aspects of plant-associated microorganisms, to enhance host plant growth and resilience. Root exudates can act as signals to reduce the competition from neighboring plants and recruiting/choreographing a wide range of diverse rhizomicrobiome members to make the host plant a good fit with its immediate environment. Root exudate production is a dynamic and key process, but there is a limited understanding of the metabolites or metabolic pathways involved in the inter-organismal communications facilitated by them. Given the well-known symbiotic relationships between plants and associated rhizomicrobiome members, adding root exudates to microbial isolation media may allow some of the large segments of rhizomicrobiome members that are not currently culturable to be grown in vitro. This will provide new insights into how root signals orchestrate associated microbes, will benefit agricultural production in the face of challenges posed by climate change, and will help to sustainably provide food for a growing global human population.
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  • 文章类型: Letter
    昼夜节律时钟出现在生命王国中,包括一些与根相关的土壤中存在的真菌和细菌,称为根际。AmyNewman及其同事最近的工作,发表在BMC生物学,已经发现拟南芥植物中的昼夜节律影响根际微生物群落的节律这带来了一个令人兴奋的问题,即植物与其根瘤菌群之间是否存在双向节律相互作用。这里,我们讨论了纽曼等人的发现。表明土壤微生物组可以具有自我维持和植物施加的节律,以及植物微生物组生物钟研究的挑战。
    Circadian clocks occur across the kingdoms of life, including some fungi and bacteria present in the root-associated soil known as the rhizosphere. Recent work from Amy Newman and colleagues, published in BMC Biology, has discovered that the circadian clock in Arabidopsis plants affects the rhythmicity of rhizosphere microbial communities This brings into play the exciting question of whether there is a bidirectional rhythmic interaction between plants and their rhizomicrobiome. Here, we discuss how the findings of Newman et al. suggest that soil microbiomes can have both self-sustained and plant-imposed rhythmicity, and the challenges of plant-microbiome circadian clock research.
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