Pythium insidiosum

里腐霉
  • 文章类型: Journal Article
    本文综述了抑制蛋白质合成的抗菌药物在治疗化脓性肾病中的作用。一种由内腐霉引起的难以治疗的感染。本文重点介绍了阴阳假单胞菌对抗菌药物的敏感性,如大环内酯类,恶唑烷酮,还有四环素.我们检查了各种研究,包括体外试验,实验性感染模型,和临床病例报告。根据我们对这些发现的综合,我们强调了这些药物在治疗化脓症方面的潜力,主要是结合手术干预。该综述强调了个性化治疗策略和进一步研究的必要性,以建立标准化的测试方案并优化治疗方法。
    This review article explores the effectiveness of antibacterial drugs that inhibit protein synthesis in treating pythiosis, a difficult-to-treat infection caused by Pythium insidiosum. The article highlights the susceptibility of P. insidiosum to antibacterial drugs, such as macrolides, oxazolidinones, and tetracyclines. We examine various studies, including in vitro tests, experimental infection models, and clinical case reports. Based on our synthesis of these findings, we highlight the potential of these drugs in managing pythiosis, primarily when combined with surgical interventions. The review emphasizes the need for personalized treatment strategies and further research to establish standardized testing protocols and optimize therapeutic approaches.
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  • 文章类型: Case Reports
    一个成年马的临床病例,溃疡性,增殖性,提出了肩部区域皮肤(肿瘤)的脓性肉芽肿病。肿块呈肉芽肿状和火山口状,有血清血排出物和有干酪样物质的瘘管。手术切除肿瘤,送实验室诊断。组织病理学使用Grocott-Gomori次甲基胺银染进行。坏死物质的存在,纤维化,浸润细胞,和棕色的菌丝,Pythium属成员的特征,被观察到。为了识别感染物种,进行了用于扩增ITS-1的常规PCR。组织病理学和PCR测试证实了与美国和中美洲以前的记录密切相关的煤腐菌菌株感染。我们的报告代表了墨西哥第一个分子确认的马化脓症病例。
    A clinical case of an adult horse with invasive, ulcerative, proliferative, pyogranulomatous disease of the skin (tumor) in the shoulder region is presented. The mass had a granulomatous and crater-shaped appearance, with serosanguinous discharge and the presence of fistulas with caseous material. The tumor was removed by surgery and sent to the laboratory for diagnosis. Histopathology was performed using Grocott-Gomori methenamine silver stain. The presence of necrotic material, fibrosis, infiltrated cells, and brown-colored hyphae, characteristic of members of the genus Pythium, were observed. To identify the infecting species, conventional PCRs for the amplification of the ITS-1 was carried out. Histopathological and PCR tests confirmed infection by a Pythium insidiosum strain closely associated with previous records from the US and Central America. Our report represents the first molecularly confirmed case of equine pythiosis in Mexico.
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  • 文章类型: Case Reports
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  • 文章类型: Journal Article
    里腐霉,一只卵菌,导致严重的角膜炎,危及视力。其临床,形态学,和微生物学特征通常与真菌性角膜炎没有区别,赢得它的绰号“parafungus”。将其与其他形式的角膜炎区分开来的独特临床标志包括放射状角膜神经炎,触手,边际渗透,和角膜缘快速扩散的倾向。脓疱性角膜炎(PK)的治疗方法长期以来一直是争论的主题,和局部和全身抗真菌药和抗菌药物已经尝试了有限的成功。这些眼睛中约有80%进行治疗性角膜移植术以挽救眼睛。因此,需要创新替代和更好的药物治疗来保护这些眼睛。腐霉对标准抗真菌治疗的抗性可归因于细胞壁中不存在麦角甾醇。植物和藻类的细胞壁具有纤维素作为必需成分。纤维素赋予强度和结构,并充当植物的“骨架”。真菌和动物细胞壁通常缺乏纤维素。通过在细胞壁结构中掺入纤维素,腐霉的细胞结构与植物和藻类细胞具有相似性。针对纤维素生物合成(CBI)的抑制剂,比如Indaziflam,isoxaben,和奎诺芬,作为阐明纤维素合成途径的关键工具。此外,纤维素酶的酶促作用有助于提取蛋白质和DNA。为了避免这个问题,我们假设CBI和纤维素酶可以作用于腐霉细胞壁,可以有效地治疗PK。还讨论了支持假设和概念证明的现有文献。我们还讨论了这些药物对腐霉细胞壁作用的分子机制。我们还旨在提出如何采购这些药物并将其用作这一破坏性实体的潜在医疗管理选择。
    Pythium insidiosum, an Oomycete, causes severe keratitis that endangers vision. Its clinical, morphological, and microbiological characteristics are often indistinguishable from those of fungal keratitis, earning it the moniker \"parafungus\". Distinctive clinical hallmarks that set it apart from other forms of keratitis include radial keratoneuritis, tentacles, marginal infiltration, and a propensity for rapid limbal spread. The therapeutic approach to Pythium keratitis (PK) has long been a subject of debate, and topical and systemic antifungals and antibacterials have been tried with limited success. Approximately 80% of these eyes undergo therapeutic keratoplasty to salvage the eye. Hence, there is a need to innovate for alternative and better medical therapy to safeguard these eyes. The resistance of Pythium to standard antifungal treatments can be attributed to the absence of ergosterol in its cell wall. Cell walls of plants and algae have cellulose as an essential constituent. Cellulose imparts strength and structure and acts as the \"skeleton\" of the plant. Fungal and animal cell walls typically lack cellulose. The cellular architecture of Pythium shares a similarity with plant and algal cells through the incorporation of cellulose within its cell wall structure. Inhibitors targeting cellulose biosynthesis (CBI), such as Indaziflam, Isoxaben, and Quinoxyphen, serve as critical tools for elucidating the pathways of cellulose synthesis. Furthermore, the enzymatic action of cellulase is instrumental for the extraction of proteins and DNA. To circumvent this issue, we hypothesize that CBI\'s and cellulase enzymes can act on the Pythium cell wall and may effectively treat PK. The available literature supporting the hypothesis and proof of concept has also been discussed. We have also discussed these drugs\' molecular mechanism of action on the Pythium cell wall. We also aim to propose how these drugs can be procured and used as a potential medical management option for this devastating entity.
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  • 文章类型: Journal Article
    与大多数致病卵菌不同,里腐霉感染人类和动物而不是植物。阴间假单胞菌具有三种临床相关的基因型/进化枝,其引起称为化脓症的严重疾病。制定感染控制策略,有必要了解这种病原体的生物学和发病机理。研究宿主特异性适应背后的进化机制至关重要,和比较基因组分析可以帮助这一点。为了促进基因组分析,开发了一种名为P.insidiosum(Pins)基因表v2.0的在线生物信息学工具。该工具包括来自37种遗传多样性的阴阳假单胞菌菌株和4种相关物种的基因组数据。该数据库包含732,686个基因,分为80,061个独特的簇,并进一步分为属的核心和可变类别,物种,和基因型水平。通过分层聚类和核心基因分析,预测了泥炭菌株和其他卵菌之间的高分辨率系统基因组关系。在所有基因型中共有3156个艾氏杆菌特异性基因,可能是导致人类和动物疾病的原因。在将这些物种特异性基因与MvirDB数据库进行比较后,112与66种已知毒力蛋白有显著匹配,其中一些可能与血管闭塞有关,这是化脓症的病理特征。基因型的相关性,地理起源,和受影响的念珠菌宿主表明,进化枝I菌株对动物更有特异性,而进化枝II/III菌株对人类更有特异性。进化枝特异性基因可能与宿主偏好相关。总之,PinsGeneTablev2.0是一个全面的基因组数据库,可供具有最少生物信息学经验的用户访问,用于分析阴阳假单胞菌基因组。
    Unlike most pathogenic oomycetes, Pythium insidiosum infects humans and animals instead of plants. P. insidiosum has three clinically relevant genotypes/clades that cause a severe disease called pythiosis. To develop strategies for infection control, it is necessary to understand the biology and pathogenesis of this pathogen. Investigating the evolutionary mechanisms behind the host-specific adaptation is vital, and comparative genomic analysis can help with this. To facilitate genomic analysis, an online bioinformatics tool called P. insidiosum (Pins) Gene Table v2.0 was developed. This tool includes genomic data from 37 genetically diverse P. insidiosum strains and four related species. The database contains 732,686 genes, grouped into 80,061 unique clusters and further divided into core and variable categories at genus, species, and genotype levels. A high-resolution phylogenomic relationship among P. insidiosum strains and other oomycetes was projected through hierarchical clustering and core gene analyses. 3156 P. insidiosum-specific genes were shared among all genotypes and may be responsible for causing disease in humans and animals. After comparing these species-specific genes to the MvirDB database, 112 had significant matches with 66 known virulence proteins, some of which might be involved in vascular occlusion, which is a pathological feature of pythiosis. The correlation of genotypes, geographic origins, and affected hosts of P. insidiosum suggests that clade-I strains are more specific to animals, while clade-II/III strains are more specific to humans. The clade-specific genes might link to host preference. In summary, Pins Gene Table v2.0 is a comprehensive genome database accessible to users with minimal bioinformatics experience for the analysis of P. insidiosum genomes.
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  • 文章类型: Journal Article
    目的:脓疱病是由脓疱菌引起的严重感染。该病在热带/亚热带地区流行。使用抗真菌药物治疗这种感染性疾病具有挑战性,并且通常需要手术切除感染的组织。如果不及时治疗,化脓症可能是致命的。需要一种有效抑制阴间假单胞菌的新疗法。这项研究筛选了17种针对植物致病性卵菌的农业杀菌剂,发现氰并呋喃在抑制野猪方面是最有效的。青霉对哺乳动物细胞的毒性低,对阴间假单胞菌的细胞色素b的亲和力高,参与能源生产。青豆酰胺可能是治疗化脓症的有希望的候选药物,因为它可以减少手术的需要,提高患者的生存率。本研究提供了关于阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴阳阴
    Pythiosis is a life-threatening infectious disease caused by the oomycete Pythium insidiosum. Clinical manifestations of pythiosis include an eye, blood vessel, skin, or gastrointestinal tract infection. Pythiosis has been increasingly reported worldwide, with an overall mortality rate of 28%. Radical surgery is required to save patients\' lives due to the limited efficacy of antimicrobial drugs. Effective medical treatments are urgently needed for pythiosis. This study aims to find anti-P. insidiosum agents by screening 17 agricultural fungicides that inhibit plant-pathogenic oomycetes and validating their efficacy and safety. Cyazofamid outperformed other fungicides as it can potently inhibit genetically diverse P. insidiosum isolates while exhibiting minimal cellular toxicities. The calculated therapeutic scores determined that the concentration of cyazofamid causing significant cellular toxicities was eight times greater than the concentration of the drug effectively inhibiting P. insidiosum. Furthermore, other studies showed that cyazofamid exhibits low-to-moderate toxicities in animals. The mechanism of cyazofamid action is likely the inhibition of cytochrome b, an essential component in ATP synthesis. Molecular docking and dynamic analyses depicted a stable binding of cyazofamid to the Qi site of the P. insidiosum\'s cytochrome b orthologous protein. In conclusion, our search for an effective anti-P. insidiosum drug indicated that cyazofamid is a promising candidate for treating pythiosis. With its high efficacy and low toxicity, cyazofamid is a potential chemical for treating pythiosis, reducing the need for radical surgeries, and improving recovery rates. Our findings could pave the way for the development of new and effective treatments for pythiosis.IMPORTANCEPythiosis is a severe infection caused by Pythium insidiosum. The disease is prevalent in tropical/subtropical regions. This infectious condition is challenging to treat with antifungal drugs and often requires surgical removal of the infected tissue. Pythiosis can be fatal if not treated promptly. There is a need for a new treatment that effectively inhibits P. insidiosum. This study screened 17 agricultural fungicides that target plant-pathogenic oomycetes and found that cyazofamid was the most potent in inhibiting P. insidiosum. Cyazofamid showed low toxicity to mammalian cells and high affinity to the P. insidiosum\'s cytochrome b, which is involved in energy production. Cyazofamid could be a promising candidate for the treatment of pythiosis, as it could reduce the need for surgery and improve the survival rate of patients. This study provides valuable insights into the biology and drug susceptibility of P. insidiosum and opens new avenues for developing effective therapies for pythiosis.
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  • 文章类型: Journal Article
    脓毒血症是由水生真菌样微生物引起的人和动物传染病,里地腐霉。血管化脓症是一种难以治疗的疾病,除了可能危及生命的感染外,还可能导致肢体丧失。这种情况在医护人员中更加陌生,这往往导致延误治疗甚至误诊。在这项研究中,我们报告我们的发现,在清迈MaharajNakorn医院收集了20年的血管化脓症护理,清迈,泰国。我们对32例患有动脉闭塞的患者进行了回顾性医学审查,这些患者具有血清抗膀胱腐霉抗体。所有患者均接受计算机断层扫描血管造影以确认动脉闭塞的水平并决定治疗计划。22例腹股沟疾病患者中有12例,股pop或膝盖以下血管闭塞,幸存下来。平均生存时间为6.58年。在随访期间,每10例患者中就有8例死亡,平均生存时间为31.6个月。疾病的腹股沟上延伸影响了结果,导致更高的死亡率。然而,与其他临床表现相比,慢性肢体缺血患者的生存率要高得多.在我们的发现中,广泛的手术切除结合抗真菌治疗和免疫疗法已被证明对血管化脓症患者有效。
    Pythiosis is an infectious disease in humans and animals caused by an aquatic fungus-like micro-organism, Pythium insidiosum. Vascular pythiosis is a difficult condition to treat and can lead to loss of limb in addition to being a potentially life-threatening infection. The condition is furthermore unfamiliar among healthcare workers, which often results in delayed treatment or even misdiagnosis. In this study, we report our findings, which have been gathered over a 20-year period in caring for vascular pythiosis in Maharaj Nakorn Chiang Mai Hospital, Chiang Mai, Thailand. We made a retrospective medical review of 32 patients presented with arterial occlusion who have serum anti-Pythium insidiosum antibodies. All patients underwent computed tomography angiography to confirm the level of arterial occlusion and decided on a treatment plan. Twelve out of 22 patients with infrainguinal disease, femoropopliteal or below-knee vascular occlusion, survived. The mean survival time is 6.58 years. Eight in 10 patients presented with suprainguinal disease died during the follow-up with a mean survival time of 31.6 months. The suprainguinal extension of the disease influenced the outcome, resulting in a higher mortality rate. However, patients presented with chronic limb ischemia had a much greater rate of survival compared to other clinical presentations. Extensive surgical resection combined with antifungal treatment and immunotherapy have proven to be effective in patients with vascular pythiosis in our findings.
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  • 文章类型: Journal Article
    目的:泥腐菌导致一种难以治疗的感染性疾病,称为化脓症,高发病率和死亡率。到目前为止,至少10株品系的基因组数据,主要分类在系统发育分化I和II中,已经使用各种下一代测序平台进行了测序。使用MGI短读平台从泰国和美国的患者中获得了2种落叶杆菌III株(最近被重新分类为周腐霉)的基因组数据。这项工作是我们尝试从各种病原体菌株中生成综合基因组数据库的一部分。
    方法:从阴间假单胞菌的gDNA样品中制备了150bp的配对末端文库(P.periculosum)菌株Pi057C3和Pi050C3(也称为ATCC90586)使用MGISQ-2000RS测序仪生成基因组序列草案。因此,对于菌株Pi057C3,我们获得了包含14,134个重叠群的42.5-Mb组装基因组(164x覆盖),241的L50,45,748的N50,57.6%的CG含量,和12,147个ORF。对于菌株Pi050C3,我们收到了包含14,511个重叠群的43.3-Mb草图基因组(230x覆盖),L50为245,N50为45208,CG含量为57.7%,和12249个ORF。基因组序列已经以登录号JAKCXM000000000.1(菌株Pi057C3)和JAKCXL000000000.1(菌株Pi050C3)保藏在NCBI/DDBJ数据库中。
    OBJECTIVE: Pythium insidiosum causes a difficult-to-treat infectious condition called pythiosis, with high morbidity and mortality. So far, genome data of at least 10 strains of P. insidiosum, primarily classified in the phylogenetic clades I and II, have been sequenced using various next-generation sequencing platforms. The MGI short-read platform was employed to obtain genome data of 2 clade-III strains of P. insidiosum (recently reclassified as Pythium periculosum) from patients in Thailand and the United States. This work is a part of our attempt to generate a comprehensive genome database from diverse pathogen strains.
    METHODS: A 150-bp paired-end library was prepared from a gDNA sample of P. insidiosum (P. periculosum) strains Pi057C3 and Pi050C3 (also known as ATCC90586) to generate draft genome sequences using an MGISEQ-2000RS sequencer. As a result, for the strain Pi057C3, we obtained a 42.5-Mb assembled genome (164x coverage) comprising 14,134 contigs, L50 of 241, N50 of 45,748, 57.6% CG content, and 12,147 ORFs. For the strain Pi050C3, we received a 43.3-Mb draft genome (230x coverage) containing 14,511 contigs, L50 of 245, N50 of 45,208, 57.7% CG content, and 12,249 ORFs. The genome sequences have been deposited in the NCBI/DDBJ databases under the accession numbers JAKCXM000000000.1 (strain Pi057C3) and JAKCXL000000000.1 (strain Pi050C3).
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  • 文章类型: Journal Article
    目的:碱化腐霉是化脓病的病原体,一种难以治疗的疾病,在全世界的人类和动物中。关于这种丝状微生物的生物学信息很少。使用Illumina短读NGS平台对几种阴间假单胞菌菌株的基因组进行了测序,产生不完整的基因组序列数据。PacBio长读平台用于获得质量更好的泥腐菌基因组。获得的基因组数据可以促进对病原体生物学和致病性的基础研究。
    方法:通过PacBio长读NGS平台,从阴阳假单胞菌菌株Pi-S中提取gDNA样品进行全基因组测序。使用CANU(v2.1)组装原始读数,抛光使用箭头(SMRT链接版本5.0.1),与使用pbmm2(v1.2.1)的原始PacBio读数对齐,使用箭头检查共有序列,和基因预测使用Funannotate管道(v1.7.4)。使用BUSCO(v4.0.2)评估基因组完成情况。因此,获得840个重叠群(最大长度:1.3Mb;N50:229.9Kb;L50:70)。序列组装显示66.7Mb的基因组大小(178x覆盖率;57.2%G-C含量),其含有20,375个ORF。基于BUSCO的评估显示85.5%的基因组完成。所有组装的重叠群序列已经以登录号BBXB02000001-BBXB02000840保藏在NCBI数据库中。
    OBJECTIVE: Pythium insidiosum is the causative agent of pythiosis, a difficult-to-treat condition, in humans and animals worldwide. Biological information about this filamentous microorganism is sparse. Genomes of several P. insidiosum strains were sequenced using the Illumina short-read NGS platform, producing incomplete genome sequence data. PacBio long-read platform was employed to obtain a better-quality genome of Pythium insidiosum. The obtained genome data could promote basic research on the pathogen\'s biology and pathogenicity.
    METHODS: gDNA sample was extracted from the P. insidiosum strain Pi-S for whole-genome sequencing by PacBio long-read NGS platform. Raw reads were assembled using CANU (v2.1), polished using ARROW (SMRT link version 5.0.1), aligned with the original raw PacBio reads using pbmm2 (v1.2.1), consensus sequence checked using ARROW, and gene predicted using Funannotate pipeline (v1.7.4). The genome completion was assessed using BUSCO (v4.0.2). As a result, 840 contigs (maximum length: 1.3 Mb; N50: 229.9 Kb; L50: 70) were obtained. Sequence assembly showed a genome size of 66.7 Mb (178x coverage; 57.2% G-C content) that contained 20,375 ORFs. A BUSCO-based assessment revealed 85.5% genome completion. All assembled contig sequences have been deposited in the NCBI database under the accession numbers BBXB02000001 - BBXB02000840.
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  • 文章类型: Journal Article
    在这项研究中,我们研究了腐霉跨各种底物形成生物膜的能力以及8-羟基喹啉衍生物(8-HQs)的抗生物膜功效。在聚苯乙烯平板上培养石榴的生物膜,隐形眼镜,和马毛。我们提供了山药生物膜形成能力的第一个证据,从而大大扩展了我们对其传播和发病机制的理解。我们的结果表明,8-HQs有效抑制生物膜形成并根除预先存在的生物膜,强调它们作为一种新的治疗方法的潜力,目前缺乏黄金标准治疗的疾病。这一发现与动物中接触镜使用和潜在感染源相关的眼部脓毒性特别相关。我们的结果有助于科学知识基础,并直接影响创新的治疗干预措施的发展。
    In this study, we investigate the ability of Pythium insidiosum to form biofilms across various substrates and the antibiofilm efficacy of 8-hydroxyquinoline derivatives (8-HQs). Biofilms of P. insidiosum were cultured on polystyrene plates, contact lenses, and horsehair. We provide the first evidence of P. insidiosum\'s biofilm-forming capability, thus considerably expanding our understanding of its transmission and pathogenesis. Our results demonstrate that 8-HQs effectively inhibit biofilm formation and eradicate pre-existing biofilms, underscoring their potential as a novel treatment strategy for pythiosis, a disease currently lacking a gold-standard treatment. This finding has particular relevance for ocular pythiosis associated with contact lens usage and potential infection sources in animals. Our results contribute to the scientific knowledge base and directly impact innovative therapeutic interventions\' development.
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