PvdS

PvdS
  • 文章类型: Journal Article
    感染哺乳动物和植物细胞的细菌分泌的效应蛋白通常通过同时影响多个靶标来抑制真核宿主细胞的防御。然而,尚未报道在竞争细菌中注射的细菌效应子破坏超过单个靶标的情况。这里,我们证明了效应蛋白,Ltae,通过IV型分泌系统(T4SS)从土壤细菌溶菌酶基因转移到竞争细菌中,假单胞菌蛋白原,影响几个目标,从而使竞争对手的抗菌防御系统失效。一个LtaE靶标是转录因子,LuxR1,调节抗菌化合物的生物合成,另一个目标是sigma因子,PvdS,生物合成另一种抗菌化合物所需的,pyoverdine.参与orfamideA和pyoverdine生物合成的基因的缺失使P.蛋白原的抗菌活性失效,而LtaE在P.蛋白原中的表达导致对L.酶基因的抗菌活性几乎完全丧失。机械上,LtaE抑制RNA聚合酶复合物与这些蛋白质中的每一种的组装。LtaE与几种假单胞菌属物种的LuxR1和PvdS同源物结合的能力表明,它可以破坏土壤或植物中存在的各种竞争者的防御。因此,我们的研究表明,多靶标效应子不仅在真核宿主中而且在细菌竞争者中都已进化为抑制细胞防御。
    Effector proteins secreted by bacteria that infect mammalian and plant cells often subdue eukaryotic host cell defenses by simultaneously affecting multiple targets. However, instances when a bacterial effector injected in the competing bacteria sabotage more than a single target have not been reported. Here, we demonstrate that the effector protein, LtaE, translocated by the type IV secretion system (T4SS) from the soil bacterium Lysobacter enzymogenes into the competing bacterium, Pseudomonas protegens, affects several targets, thus disabling the antibacterial defenses of the competitor. One LtaE target is the transcription factor, LuxR1, that regulates biosynthesis of the antimicrobial compound, orfamide A. Another target is the sigma factor, PvdS, required for biosynthesis of another antimicrobial compound, pyoverdine. Deletion of the genes involved in orfamide A and pyoverdine biosynthesis disabled the antibacterial activity of P. protegens, whereas expression of LtaE in P. protegens resulted in the near-complete loss of the antibacterial activity against L. enzymogenes. Mechanistically, LtaE inhibits the assembly of the RNA polymerase complexes with each of these proteins. The ability of LtaE to bind to LuxR1 and PvdS homologs from several Pseudomonas species suggests that it can sabotage defenses of various competitors present in the soil or on plant matter. Our study thus reveals that the multi-target effectors have evolved to subdue cell defenses not only in eukaryotic hosts but also in bacterial competitors.
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  • 文章类型: Journal Article
    增生性玻璃体视网膜疾病(PVDs)代表一组异质性的病理,其特征是存在视网膜增生膜,视网膜色素上皮(RPE)的发育密切相关。由于目前唯一有效的治疗方法是手术,我们旨在研究Nutlin-3a的潜在治疗活性,MDM2/p53相互作用的一种小型非基因毒性抑制剂,在ARPE-19细胞系和人RPE原代细胞上,作为RPE的体外模型,更重要的是,配制和评估设计用于眼科给药的装载Nutlin-3a的脂质体。
    脂质体是在选择不同条件下通过微流体装置使用创新方法生产的。通过光子相关光谱和离心场流分馏评估脂质体的尺寸分布,同时通过透射电子显微镜和傅里叶变换红外光谱研究了脂质体的结构。通过超滤和HPLC评估Nutlin-3a截留能力。Nutlin-3a作为溶液或装载在脂质体中的生物有效性通过活力进行评估,扩散,细胞凋亡和迁移测定以及形态学分析。
    微流体配方研究能够选择由磷脂酰胆碱(PC)5.4或8.2mg/mL和10%乙醇组成的脂质体,以平均直径为150-250nm的圆形囊泡结构为特征。特别是,基于较低PC浓度的脂质体具有较高的稳定性。Nutlin-3a被有效地包封在脂质体中并且能够在RPE细胞模型中诱导活力和迁移的显著降低。
    我们的结果为脂质体用于眼部递送Nutlin-3a的可能用途奠定了基础。
    UNASSIGNED: Proliferative vitreoretinal diseases (PVDs) represent a heterogeneous group of pathologies characterized by the presence of retinal proliferative membranes, in whose development retinal pigment epithelium (RPE) is deeply involved. As the only effective treatment for PVDs at present is surgery, we aimed to investigate the potential therapeutic activity of Nutlin-3a, a small non-genotoxic inhibitor of the MDM2/p53 interaction, on ARPE-19 cell line and on human RPE primary cells, as in vitro models of RPE and, more importantly, to formulate and evaluate Nutlin-3a loaded liposomes designed for ophthalmic administration.
    UNASSIGNED: Liposomes were produced using an innovative approach by a microfluidic device under selection of different conditions. Liposome size distribution was evaluated by photon correlation spectroscopy and centrifugal field flow fractionation, while the liposome structure was studied by transmission electron microscopy and Fourier-transform infrared spectroscopy. The Nutlin-3a entrapment capacity was evaluated by ultrafiltration and HPLC. Nutlin-3a biological effectiveness as a solution or loaded in liposomes was evaluated by viability, proliferation, apoptosis and migration assays and by morphological analysis.
    UNASSIGNED: The microfluidic formulative study enabled the selection of liposomes composed of phosphatidylcholine (PC) 5.4 or 8.2 mg/mL and 10% ethanol, characterized by roundish vesicular structures with 150-250 nm mean diameters. Particularly, liposomes based on the lower PC concentration were characterized by higher stability. Nutlin-3a was effectively encapsulated in liposomes and was able to induce a significant reduction of viability and migration in RPE cell models.
    UNASSIGNED: Our results lay the basis for a possible use of liposomes for the ocular delivery of Nutlin-3a.
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  • 文章类型: Journal Article
    生物体需要足够的细胞内铁来维持生物过程。然而,细胞可被过度的铁诱导的氧化应激损伤。因此,铁稳态必须严格调节。总的来说,细菌已经进化出复杂的机制来维持铁稳态。在这项研究中,我们显示假交替单胞菌。R3具有四组铁吸收系统。其中,铁载体pyoverdine依赖的铁吸收系统和亚铁转运蛋白Feo系统对于铁吸收和prodiginine生物合成更为重要。严格的饥饿蛋白SspA通过调节所有铁摄取系统的表达来积极控制铁摄取和铁依赖性的prodiginine生物合成。反过来,细胞外铁缺乏和过多可以诱导和抑制SspA的表达,分别。有趣的是,细胞质外功能sigma因子PvdS还调节铁摄取和prodiginine产生,并响应细胞外铁水平,表现出与SspA类似的现象。值得注意的是,SspA和PvdS不仅独立运行,但是它们也可以相互补偿,他们的表达会受到对方的影响。所有这些发现表明SspA和PvdS协调菌株R3中的铁稳态和prodiginine生物合成。更重要的是,我们的结果还表明,铜绿假单胞菌PAO1中的SspA和PvdS同系物在铁吸收方面与假单胞菌中的对应物具有相似的功能,表明SspA和PvdS之间在铁稳态上的协调可以在典型的革兰氏阴性细菌中保守。由于铁稳态的主要调节对细胞存活极为重要,SspA和PvdS之间的这种串扰可能对环境具有重要意义。重要性细胞内铁的缺乏和过量都可能是有害的,因此,生物体内的铁稳态需要受到严格的调节。目前,三价铁摄取调节剂(Fur)是细菌铁稳态的最佳特征调节剂,而铁稳态的其他调节剂仍有待进一步探索。这里,我们证明了严格的饥饿蛋白SspA和胞质外功能sigma因子PvdS在假交替单胞菌中协调铁的吸收和铁依赖性的前列腺碱的生物合成。R3.这两个监管机构独立工作,但是它们的功能可以补偿对方,它们的表达可以受到对方的影响。此外,它们的表达可以被细胞外铁缺乏和过量激活和抑制,分别。值得注意的是,铜绿假单胞菌PAO1中的SspA和PvdS同系物在铁吸收方面表现出与假单胞菌中的对应物相似的功能,这表明这种新型的铁稳态微调模式可以在典型的革兰氏阴性菌中得到保留。
    Organisms need sufficient intracellular iron to maintain biological processes. However, cells can be damaged by excessive iron-induced oxidation stress. Therefore, iron homeostasis must be strictly regulated. In general, bacteria have evolved complex mechanisms to maintain iron homeostasis. In this study, we showed that Pseudoalteromonas sp. R3 has four sets of iron uptake systems. Among these, the siderophore pyoverdine-dependent iron uptake system and the ferrous iron transporter Feo system are more important for iron uptake and prodiginine biosynthesis. Stringent starvation protein SspA positively controls iron uptake and iron-dependent prodiginine biosynthesis by regulating the expression of all iron uptake systems. In turn, the expression of SspA can be induced and repressed by extracellular iron deficiency and excess, respectively. Interestingly, extracytoplasmic function sigma factor PvdS also regulates iron uptake and prodiginine production and responds to extracellular iron levels, exhibiting a similar phenomenon as SspA. Notably, not only do SspA and PvdS function independently, but they can also compensate for each other, and their expression can be affected by the other. All of these findings demonstrate that SspA and PvdS coordinate iron homeostasis and prodiginine biosynthesis in strain R3. More importantly, our results also showed that SspA and PvdS homologs in Pseudomonas aeruginosa PAO1 have similar functions in iron uptake to their counterparts in Pseudoalteromonas, suggesting that coordination between SspA and PvdS on iron homeostasis could be conserved in typical Gram-negative bacteria. Since master regulation of iron homeostasis is extremely important for cell survival, this cross talk between SspA and PvdS may be environmentally significant. IMPORTANCE Both deficiency and excess of intracellular iron can be harmful, and thus, the iron homeostasis needs to be tightly regulated in organisms. At present, the ferric uptake regulator (Fur) is the best-characterized regulator involved in bacterial iron homeostasis, while other regulators of iron homeostasis remain to be further explored. Here, we demonstrated that the stringent starvation protein SspA and the extracytoplasmic function sigma factor PvdS coordinate iron uptake and iron-dependent prodiginine biosynthesis in Pseudoalteromonas sp. R3. These two regulators work independently, but their functions can compensate for the other and their expression can be affected by the other. Moreover, their expression can be activated and repressed by extracellular iron deficiency and excess, respectively. Notably, SspA and PvdS homologs in Pseudomonas aeruginosa PAO1 exhibit similar functions in iron uptake to their counterparts in Pseudoalteromonas, suggesting that this novel fine-tuned mode of iron homeostasis could be conserved in typical Gram-negative bacteria.
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  • 文章类型: Journal Article
    OrbS和PvdS是胞质外功能(ECF)σ因子,可调节伯克霍尔德氏菌洋葱复合体和假单胞菌属中铁载体ornibactin和pyoverdine生物合成所需的操纵子的转录。,分别。在这里,我们表明OrbS的启动子识别需要特定的四聚体-35和-10元件序列,这些序列与共有PvdS依赖性启动子的序列非常相似。然而,而铜绿假单胞菌PvdS可以提供OrbS依赖性启动子,OrbS不能利用PvdS依赖性启动子。为了识别存在于OrbS依赖性启动子上的促进OrbS识别的特征,我们对OrbS和PvdS识别启动子的核苷酸序列要求进行了详细分析。这表明,OrbS有效利用启动子需要位于σ结合元件外部的DNA序列特征。特别是,在OrbS依赖性启动子处从-35元件向下游延伸的A-tract的存在被证明是OrbS特异性的重要贡献者。我们的观察结果表明,间隔序列的性质可以通过调节局部DNA结构对某些ECFσ因子的启动子识别产生重大影响。重要性ECFσ因子通过将RNA聚合酶引导至称为-35和-10元件的启动子序列来调节细菌基因的子集以响应环境胁迫信号。在这项工作中,我们确定了由ECFσ因子OrbS识别的-10和-35元素。此外,我们证明,通过该σ因子有效利用启动子还需要位于-35区域下游的聚腺嘌呤束。我们认为,A-tractDNA的独特结构在-35元件上施加了构象特征,从而促进了OrbS的有效识别。我们的结果表明,位于核心启动子元件之间的序列可以通过某些ECFσ因子对启动子识别做出重大贡献。
    OrbS and PvdS are extracytoplasmic function (ECF) σ factors that regulate transcription of operons required for the biosynthesis of the siderophores ornibactin and pyoverdine in the Burkholderia cepacia complex and Pseudomonas spp., respectively. Here we show that promoter recognition by OrbS requires specific tetrameric -35 and -10 element sequences that are strikingly similar to those of the consensus PvdS-dependent promoter. However, whereas Pseudomonas aeruginosa PvdS can serve OrbS-dependent promoters, OrbS cannot utilize PvdS-dependent promoters. To identify features present at OrbS-dependent promoters that facilitate recognition by OrbS, we carried out a detailed analysis of the nucleotide sequence requirements for promoter recognition by both OrbS and PvdS. This revealed that DNA sequence features located outside the sigma binding elements are required for efficient promoter utilization by OrbS. In particular, the presence of an A-tract extending downstream from the -35 element at OrbS-dependent promoters was shown to be an important contributor to OrbS specificity. Our observations demonstrate that the nature of the spacer sequence can have a major impact on promoter recognition by some ECF σ factors through modulation of the local DNA architecture.IMPORTANCE ECF σ factors regulate subsets of bacterial genes in response to environmental stress signals by directing RNA polymerase to promoter sequences known as the -35 and -10 elements. In this work, we identify the -10 and -35 elements that are recognized by the ECF σ factor OrbS. Furthermore, we demonstrate that efficient promoter utilization by this σ factor also requires a polyadenine tract located downstream of the -35 region. We propose that the unique architecture of A-tract DNA imposes conformational features on the -35 element that facilitates efficient recognition by OrbS. Our results show that sequences located between the core promoter elements can make major contributions to promoter recognition by some ECF σ factors.
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  • 文章类型: Journal Article
    细菌中一种常见的合作形式是基于有益代谢物的分泌,可作为公共物品在一个组内的细胞之间共享。因为合作可以被“作弊”突变体利用,对公共利益的贡献较少或根本没有贡献,人们非常有兴趣了解合作保持进化稳定所需的条件。相比之下,人们对是否作弊知之甚少,一旦固定在人口中,当条件发生变化时,能够恢复合作。这里,我们通过实验进化的铜绿假单胞菌来解决这个问题,部分缺乏清除铁的公共物品pyroverdine的生产,以前显示的有利于合作的条件。
    经过大约200代的实验进化,我们筛选了720个进化克隆的pyoverdine生产水平的变化。我们没有发现全面合作重新演变的证据,即使在空间结构增加的环境中,并降低了公共物品生产的成本-这两个条件以前已被证明可以保持合作。相比之下,我们观察到选择完全废除pyoverdine生产。完全性状退化的模式可能是由非结构化的“作弊作弊”驱动的,铁限制的环境,其中pyoverdine是重要的生长,以及在富铁环境中选择一种适应不良的性状,其中pyoverdine是多余的。
    我们的研究表明,重新发展公共产品合作的路径可能会受到限制。虽然可能导致逆转的突变靶标数量的限制可能是观察到的模式的一个原因,另一种解释是,回复体从稀有性传播所需的选择条件比保持合作所需的条件严格得多。
    A common form of cooperation in bacteria is based on the secretion of beneficial metabolites, shareable as public good among cells within a group. Because cooperation can be exploited by \"cheating\" mutants, which contribute less or nothing to the public good, there has been great interest in understanding the conditions required for cooperation to remain evolutionarily stable. In contrast, much less is known about whether cheats, once fixed in the population, are able to revert back to cooperation when conditions change. Here, we tackle this question by subjecting experimentally evolved cheats of Pseudomonas aeruginosa, partly deficient for the production of the iron-scavenging public good pyoverdine, to conditions previously shown to favor cooperation.
    Following approximately 200 generations of experimental evolution, we screened 720 evolved clones for changes in their pyoverdine production levels. We found no evidence for the re-evolution of full cooperation, even in environments with increased spatial structure, and reduced costs of public good production - two conditions that have previously been shown to maintain cooperation. In contrast, we observed selection for complete abolishment of pyoverdine production. The patterns of complete trait degradation were likely driven by \"cheating on cheats\" in unstructured, iron-limited environments where pyoverdine is important for growth, and selection against a maladaptive trait in iron-rich environments where pyoverdine is superfluous.
    Our study shows that the path to re-evolve public-goods cooperation can be constrained. While a limitation of the number of mutational targets potentially leading to reversion might be one reason for the observed pattern, an alternative explanation is that the selective conditions required for revertants to spread from rarity are much more stringent than those needed to maintain cooperation.
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  • 文章类型: Journal Article
    Membrane-spanning signaling pathways enable bacteria to alter gene expression in response to extracytoplasmic stimuli. Many such pathways are cell-surface signaling (CSS) systems, which are tripartite molecular devices that allow Gram-negative bacteria to transduce an extracellular stimulus into a coordinated transcriptional response. Typically, CSS systems are composed of the following: (1) an outer membrane receptor, which senses the extracellular stimulus; (2) a cytoplasmic membrane-spanning protein involved in signal transduction from the periplasm to the cytoplasm; and (3) an extracytoplasmic function (ECF) sigma factor that initiates expression of the stimulus-responsive gene(s). Members of genus Pseudomonas provide a paradigmatic example of how CSS systems contribute to the global control of gene expression. Most CSS systems enable self-regulated uptake of iron via endogenous (pyoverdine) or exogenous (xenosiderophores, heme, and citrate) carriers. Some are also implicated in virulence, biofilm formation, and cell-cell interactions. Incorporating insights from the well-characterized alginate regulatory circuitry, this review will illustrate common themes and variations at the level of structural and functional properties of Pseudomonas CSS systems. Control of the expression and activity of ECF sigma factors are central to gene regulation via CSS, and the variety of intrinsic and extrinsic factors influencing these processes will be discussed.
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