Procrustes shape

  • 文章类型: Journal Article
    背景:运动是动物的一个决定性方面,但是很少在微观无脊椎动物中使用定量方法进行研究。Bdelloid轮虫是一种世界性的水生无脊椎动物,具有极大的科学兴趣,因为它们能够在非常恶劣的环境中生存,也因为它们代表了仅包括无性繁殖物种的古代血统的罕见例子。在这个课上,Adinetaricciae已成为模型物种,因为它异常容易培养。然而,人们对它的行为学知之甚少,对它在进食过程中的行为几乎一无所知。
    方法:为了探索李草的摄食行为,以及提供计算行为学在微观无脊椎动物中的应用示例,我们将Procrustes运动分析与排序和聚类方法相结合,应用于饲喂过程中记录的实验室繁殖样本。
    结果:我们证明了在喂食过程中的运动可以在具有三种主要\'运动模式\'的简单二维形状空间中准确描述。脚伸缩,身体保持笔直,是最常见的\'模式\',但它伴随着脚的周期性旋转和弯曲,而脚大多是缩回的。
    结论:Procrustes运动分析是一种相对简单但有效的工具,用于描述Ricciae的摄食过程中的运动。这种方法的应用产生了定量数据,可以在各种实验环境中分析与遗传和生态差异有关的数据。该研究提供了一个易于在其他无脊椎动物中复制的例子,包括其他行为生态学通常鲜为人知的微观动物。
    BACKGROUND: Movement is a defining aspect of animals, but it is rarely studied using quantitative methods in microscopic invertebrates. Bdelloid rotifers are a cosmopolitan class of aquatic invertebrates of great scientific interest because of their ability to survive in very harsh environment and also because they represent a rare example of an ancient lineage that only includes asexually reproducing species. In this class, Adineta ricciae has become a model species as it is unusually easy to culture. Yet, relatively little is known of its ethology and almost nothing on how it behaves during feeding.
    METHODS: To explore feeding behaviour in A. ricciae, as well as to provide an example of application of computational ethology in a microscopic invertebrate, we apply Procrustes motion analysis in combination with ordination and clustering methods to a laboratory bred sample of individuals recorded during feeding.
    RESULTS: We demonstrate that movement during feeding can be accurately described in a simple two-dimensional shape space with three main \'modes\' of motion. Foot telescoping, with the body kept straight, is the most frequent \'mode\', but it is accompanied by periodic rotations of the foot together with bending while the foot is mostly retracted.
    CONCLUSIONS: Procrustes motion analysis is a relatively simple but effective tool for describing motion during feeding in A. ricciae. The application of this method generates quantitative data that could be analysed in relation to genetic and ecological differences in a variety of experimental settings. The study provides an example that is easy to replicate in other invertebrates, including other microscopic animals whose behavioural ecology is often poorly known.
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  • 文章类型: Journal Article
    大多数哺乳动物目和科的分类正在争论中,物种的数量可能比目前公认的要多。提高分类学知识至关重要,随着生物多样性的迅速减少。形态学是分类学知识的来源,应用于解剖结构的二维(2D)照片的几何形态计量学通常用于量化谱系内和谱系之间的差异。照片信息丰富,容易获得,和低成本。2D分析,然而,当应用于颅骨和其他高度三维(3D)结构时,会引入大量的测量误差源。为了探索二维分析评估分类多样性的潜力,我们使用帕塔丝猴(Erythercebus),一个大的属,半陆地,非洲guenons,作为一个案例研究。通过应用一系列测试来比较2D和3D测量的成人颅骨的腹侧视图,我们证明,尽管不准确占个人形状差异的四分之一,2D中的结果几乎完美地反映了3D中的结果。这种明显的悖论可以用与测量误差相关的形状方差分量中的协变强度很小来解释。摄影设置的严格标准化和几乎共面地标的选择可能会进一步改善2D与3D形状的对应关系。二维几何形态计量学是,因此,适用于帕塔斯腹侧颅骨的分类比较。虽然现在概括还为时过早,我们的结果证实了以前在哺乳动物中的类似研究发现,并建议2D形状分析是用于微小差异的形态学研究的有效启发式工具。
    The classification of most mammalian orders and families is under debate and the number of species is likely greater than currently recognized. Improving taxonomic knowledge is crucial, as biodiversity is in rapid decline. Morphology is a source of taxonomic knowledge, and geometric morphometrics applied to two dimensional (2D) photographs of anatomical structures is commonly employed for quantifying differences within and among lineages. Photographs are informative, easy to obtain, and low cost. 2D analyses, however, introduce a large source of measurement error when applied to crania and other highly three dimensional (3D) structures. To explore the potential of 2D analyses for assessing taxonomic diversity, we use patas monkeys (Erythrocebus), a genus of large, semi-terrestrial, African guenons, as a case study. By applying a range of tests to compare ventral views of adult crania measured both in 2D and 3D, we show that, despite inaccuracies accounting for up to one-fourth of individual shape differences, results in 2D almost perfectly mirror those in 3D. This apparent paradox might be explained by the small strength of covariation in the component of shape variance related to measurement error. A rigorous standardization of photographic settings and the choice of almost coplanar landmarks are likely to further improve the correspondence of 2D to 3D shapes. 2D geometric morphometrics is, thus, appropriate for taxonomic comparisons of patas ventral crania. Although it is too early to generalize, our results corroborate similar findings from previous research in mammals, and suggest that 2D shape analyses are an effective heuristic tool for morphological investigation of small differences.
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