Primula

报春花
  • 文章类型: Journal Article
    关于超基因的研究,非重组基因组区域包含控制复杂表型的紧密连锁基因,最近在基因组学中获得了突出的地位。异类地,在几个被子植物家庭中促进异形的花卉异形,受S基因座超基因控制。主要在密切相关的报春花物种中研究了S基因座,最近,在其他独立进化的群体中。然而,尚不清楚S基因座的遗传结构和组成是否在具有共同起源的物种之间保持不变,并随后在更大的时间尺度上分化。为了解决这个研究空白,我们提出了报春花的染色体尺度基因组组装,与报春花(已表征其S基因座)具有相同的异型起源,但在1800万年前与之不同。这两个物种之间的比较基因组分析使我们能够证明,第一次,S基因座可以在染色体之间跳跃(即易位),保持其控制异型的功能。此外,我们发现四个S基因座基因是保守的,但在超基因中重新改组,似乎不影响他们的表达,因此,我们无法检测到的变化解释缺乏自交不亲和。此外,我们证实S基因座没有发生遗传变性。最后,我们从全基因组复制和转座因子积累的角度研究了埃里卡利卡利斯内的埃德博吉杆菌进化史。总之,我们的工作为比较分析提供了宝贵的资源,旨在研究异型遗传以及超基因在塑造复杂表型进化中的关键作用。
    Research on supergenes, non-recombining genomic regions housing tightly linked genes that control complex phenotypes, has recently gained prominence in genomics. Heterostyly, a floral heteromorphism promoting outcrossing in several angiosperm families, is controlled by the S-locus supergene. The S-locus has been studied primarily in closely related Primula species and, more recently, in other groups that independently evolved heterostyly. However, it remains unknown whether genetic architecture and composition of the S-locus are maintained among species that share a common origin of heterostyly and subsequently diverged across larger time scales. To address this research gap, we present a chromosome-scale genome assembly of Primula edelbergii, a species that shares the same origin of heterostyly with Primula veris (whose S-locus has been characterized) but diverged from it 18 million years ago. Comparative genomic analyses between these two species allowed us to show, for the first time, that the S-locus can \'jump\' (i.e. translocate) between chromosomes maintaining its function in controlling heterostyly. Additionally, we found that four S-locus genes were conserved but reshuffled within the supergene, seemingly without affecting their expression, thus we could not detect changes explaining the lack of self-incompatibility in P. edelbergii. Furthermore, we confirmed that the S-locus is not undergoing genetic degeneration. Finally, we investigated P. edelbergii evolutionary history within Ericales in terms of whole genome duplications and transposable element accumulation. In summary, our work provides a valuable resource for comparative analyses aimed at investigating the genetics of heterostyly and the pivotal role of supergenes in shaping the evolution of complex phenotypes.
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  • 文章类型: Journal Article
    在这项研究中,我们描述和说明一个新物种,PrimulaweilieiL.S.Yang,Z.K.Wu&G.W.Hu,来自神农架林区,位于中国中部的湖北省。在形态上分配给Primulasect。阿列苏西亚基于它的侏儒和无毛习惯,长叶柄,果实比花萼长,并在景观上被farina覆盖。这个新物种与P.gemmifera和P.munroisubsp相似。在同一节中,但它可以通过较小的花萼来区分,同花序,在每个花序中没有环状附属物和只有1-2花的花冠筒喉。根据IUCN红色名录标准进行的评估,我们建议将P.weiliei归类为极度濒危(CR)物种。
    In this study, we describe and illustrate a new species, Primulaweiliei L.S.Yang, Z.K.Wu & G.W.Hu, from the Shennongjia Forestry District, Hubei Province in Central China. It is morphologically assigned to Primulasect.Aleuritia based on its dwarf and hairless habit, long petiole, fruits longer than calyx and covered by farina on the scape. This new species is similar to P.gemmifera and P.munroisubsp.yargongensis in the same section, but it can be distinguished by its smaller calyxes, homostylous flowers, corolla tube throat without annular appendage and only 1-2 flowers in each inflorescence. Based on the assessment conducted according to the IUCN Red List criteria, we propose that P.weiliei be classified as a Critically Endangered (CR) species.
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  • 文章类型: Journal Article
    山地生物群在第四纪寒冷阶段幸存下来,最有可能在外围避难所和/或冰盖内的无冰高峰(nunataks)中幸存下来。虽然已广泛证明了在周围避难所的生存,努纳塔克难民的证据仍然很少。我们从欧洲东南部阿尔卑斯山不同海拔的三种山地植物物种中生成了RADseq数据,以研究在最后一次冰川最大(LGM)期间不同冰川避难所的作用。我们检验了以下假设。(i)深Piave谷形成了分布在其上的物种中最深的遗传分裂,划定两个外围避难所。(ii)在外围避难所中,山地到高山物种的风琴和报春花在LGM中幸存下来,而高高山至狂欢节萨克斯FragraFacchinii很可能在几次努纳塔克难民中幸存下来。(iii)在LGM期间,海拔较低的物种的种群数量急剧下降。相比之下,由于目前在永久无冰的高峰和较小的种群上存活,因此海拔较高的物种显示出种群规模的长期稳定性。我们在Piave山谷的两侧发现了外围避难所,这是一个主要的遗传障碍。人口统计模型不仅证实了纳纳塔克人的生存。海拔隔离影响了物种的人口统计学波动,海拔较低的物种在LGM结束时显示出种群的显着增加,海拔较高的物种要么显示出目前的减少,要么具有短暂瓶颈的稳定种群规模。我们的结果强调了努纳塔克人生存和物种生态学在山区物种人口统计学历史中的作用。
    Mountain biota survived the Quaternary cold stages most probably in peripheral refugia and/or ice-free peaks within ice-sheets (nunataks). While survival in peripheral refugia has been broadly demonstrated, evidence for nunatak refugia is still scarce. We generated RADseq data from three mountain plant species occurring at different elevations in the southeastern European Alps to investigate the role of different glacial refugia during the Last Glacial Maximum (LGM). We tested the following hypotheses. (i) The deep Piave Valley forms the deepest genetic split in the species distributed across it, delimiting two peripheral refugia. (ii) The montane to alpine species Campanula morettiana and Primula tyrolensis survived the LGM in peripheral refugia, while high-alpine to subnival Saxifraga facchinii likely survived in several nunatak refugia. (iii) The lower elevation species suffered a strong population decline during the LGM. By contrast, the higher elevation species shows long-term stability of population sizes due to survival on permanently ice-free peaks and small population sizes at present. We found peripheral refugia on both sides of the Piave Valley, which acted as a major genetic barrier. Demographic modelling confirmed nunatak survival not only for S. facchinii but also for montane to alpine C. morettiana. Altitudinal segregation influenced the species\' demographic fluctuations, with the lower elevation species showing a significant population increase at the end of the LGM, and the higher elevation species either showing decrease towards the present or stable population sizes with a short bottleneck. Our results highlight the role of nunatak survival and species ecology in the demographic history of mountain species.
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  • 文章类型: Journal Article
    报春花是一种昆虫授粉,多年生草本植物属于Aprophae(报春花科),在交配系统中表现出相当大的差异,主要是异型种群,包括长型和短型花卉形态和自交种群,仅包括同型。为了便于将来对该物种的种群遗传学和交配模式进行调查,我们利用下一代测序技术,从仙草微卫星标记中获得了25个标记,并在三个自然种群的30个个体样本中测量了多态性和遗传多样性。标记显示相对较高的多态性,每个基因座观察到的等位基因数量从3到16(平均值=8.36)。观察到的和预期的杂合度分别为0.100至1.000和0.145至0.843。其中21个基因座也成功地在细齿假单胞菌中扩增。这些微卫星标记可以为研究该物种的种群遗传多样性模式以及远端和同体之间的进化关系提供强大的工具。
    Primula secundiflora is an insect-pollinated, perennial herb belonging to the section Proliferae (Primulaceae) that exhibits considerable variation in its mating system, with predominantly outcrossing populations comprising long-styled and short-styled floral morphs and selfing populations comprising only homostyles. To facilitate future investigations of the population genetics and mating patterns of this species, we developed 25 microsatellite markers from P. secundiflora using next-generation sequencing and measured polymorphism and genetic diversity in a sample of 30 individuals from three natural populations. The markers displayed high polymorphism, with the number of observed alleles per locus ranging from three to 16 (mean = 8.36). The observed and expected heterozygosities ranged from 0.100 to 1.000 and 0.145 to 0.843, respectively. Twenty-one of the loci were also successfully amplified in P. denticulata. These microsatellite markers should provide powerful tools for investigating patterns of population genetic diversity and the evolutionary relationships between distyly and homostyly in P. secundiflora.
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  • 文章类型: Journal Article
    奇怪的是,一种促进异形的花卉二象性,由称为S基因座的半合子基因组区域控制。S基因座内基因的中断是造成偏僻的丧失和同居的出现的原因,有利于自交的花卉单态。使用来自普通报春花种群的远端和同型个体的全基因组重测序数据,并利用我们测试的报春花的高质量参考基因组,第一次,关于S基因转换为自交的进化后果的预测。我们的结果揭示了CYP中先前未检测到的结构重排,与向同态转变相关,并证实了先前报道的结果,同型特定,S基因CYP外显子的功能丧失突变。我们还发现CYP的启动子和内含子区域在远端和同型个体中是保守的,提示CYP通过其启动子和内含子区域的突变下调不是向同态转变的原因。此外,我们发现半合子与S基因外的旁系同源物相比,S基因的遗传多样性降低。此外,向同态的转变降低了S基因及其旁系同源物的遗传多样性,正如在主要自交植物中所预期的那样。最后,我们测试过,第一次,在向同态过渡的早期阶段,S基因座基因型变化的长期理论模型,支持S基因座的两个副本可能会降低同态适应度的假设。
    Distyly, a floral dimorphism that promotes outcrossing, is controlled by a hemizygous genomic region known as the S-locus. Disruptions of genes within the S-locus are responsible for the loss of distyly and the emergence of homostyly, a floral monomorphism that favors selfing. Using whole-genome resequencing data of distylous and homostylous individuals from populations of Primula vulgaris and leveraging high-quality reference genomes of Primula we tested, for the first time, predictions about the evolutionary consequences of transitions to selfing on S-genes. Our results reveal a previously undetected structural rearrangement in CYPᵀ associated with the shift to homostyly and confirm previously reported, homostyle-specific, loss-of-function mutations in the exons of the S-gene CYPᵀ. We also discovered that the promoter and intronic regions of CYPᵀ in distylous and homostylous individuals are conserved, suggesting that down-regulation of CYPᵀ via mutations in its promoter and intronic regions is not a cause of the shift to homostyly. Furthermore, we found that hemizygosity is associated with reduced genetic diversity in S-genes compared with their paralogs outside the S-locus. Additionally, the shift to homostyly lowers genetic diversity in both the S-genes and their paralogs, as expected in primarily selfing plants. Finally, we tested, for the first time, long-standing theoretical models of changes in S-locus genotypes during early stages of the transition to homostyly, supporting the assumption that two copies of the S-locus might reduce homostyle fitness.
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  • 文章类型: Journal Article
    背景:英格兰严重精神疾病患者的心血管疾病是导致过早死亡的主要可预防因素。为了解决这个问题,从2019年起,在伦敦的3个普通诊所中实施了护士和同伴教练提供的服务(Primrose-A)(在COVID-19期间继续实施).本研究旨在与患者和工作人员进行访谈,以确定以下各项的可接受性,和经验,月见草-A.
    方法:对8名接受过Primrose-A治疗的患者进行半结构化录音访谈,还有3个护士,1个GP,并进行了1名同行教练,他们在伦敦的3次GP手术中交付了Primrose-A。反思性主题分析用于从转录的访谈中识别主题。
    结果:总体而言,患者和工作人员对报春花A的看法是积极的,参与者描述了改善患者心理健康的成功,隔离,动机,和身体健康。医护人员和患者之间的治疗关系,长期定期预约是患者参与和接受干预的重要促进因素.确定了实施报春花A的几个障碍,包括培训,行政和沟通问题,时间和资源的负担,和COVID-19。
    结论:干预可接受性可以通过提供更长期的连续性护理与更多的同伴辅导会议来建立积极的关系和促进持续的健康行为改变来提高。未来实施Primrose-A或类似干预措施应考虑:(1)培训充分性(涵盖身心健康,包括成瘾),(2)提供足够的人员来进行干预,(3)促进员工之间明确的沟通途径,(4)支持行政流程。
    BACKGROUND: Cardiovascular disease among patients with severe mental illness in England is a major preventable contributor to premature mortality. To address this, a nurse and peer-coach delivered service (Primrose-A) was implemented in three London general practices from 2019 (implementation continued during COVID-19). This study aimed to conduct interviews with patient and staff to determine the acceptability of, and experiences with, Primrose-A.
    METHODS: Semi-structured audio-recorded interviews with eight patients who had received Primrose-A, and 3 nurses, 1 GP, and 1 peer-coach who had delivered Primrose-A in three London-based GP surgeries were conducted. Reflexive thematic analysis was used to identify themes from the transcribed interviews.
    RESULTS: Overall, Primrose-A was viewed positively by patients and staff, with participants describing success in improving patients\' mental health, isolation, motivation, and physical health. Therapeutic relationships between staff and patients, and long regular appointments were important facilitators of patient engagement and acceptance of the intervention. Several barriers to the implementation of Primrose-A were identified, including training, administrative and communication issues, burden of time and resources, and COVID-19.
    CONCLUSIONS: Intervention acceptability could be enhanced by providing longer-term continuity of care paired with more peer-coaching sessions to build positive relationships and facilitate sustained health behaviour change. Future implementation of Primrose-A or similar interventions should consider: (1) training sufficiency (covering physical and mental health, including addiction), (2) adequate staffing to deliver the intervention, (3) facilitation of clear communication pathways between staff, and (4) supporting administrative processes.
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  • 文章类型: Journal Article
    开花植物中从异交到自交的进化转变具有趋同的形态和基因组特征,并且可能涉及相关谱系内的平行进化。通常认为形态特征的适应性进化比基因组自交综合征的非适应性特征进化得更快。我们调查了报春花复合物中与从远处到同质转变相关的表型和基因组变化。我们确定了向自交的过渡是否不止一次,并使用22种花卉性状以及来自25个种群的核和质体基因组数据研究了形态和基因组自交综合征进化的各个阶段。检测到两个独立的转变,代表较早和最近衍生的自交谱系。较旧的谱系表现出形态学和基因组自交综合征的经典特征。尽管在年轻的自交谱系中,两种自交综合征的特征都不那么发达,它们表现出与较老的自交谱系平行的发展。这一发现与某些基因组变化应落后于形态性状的适应性变化的预测相反。我们的发现强调了有关相关谱系之间从异交到自交过渡的时间和程度的比较研究对于研究形态和分子进化的节奏的价值。
    Evolutionary transitions from outcrossing to selfing in flowering plants have convergent morphological and genomic signatures and can involve parallel evolution within related lineages. Adaptive evolution of morphological traits is often assumed to evolve faster than nonadaptive features of the genomic selfing syndrome. We investigated phenotypic and genomic changes associated with transitions from distyly to homostyly in the Primula oreodoxa complex. We determined whether the transition to selfing occurred more than once and investigated stages in the evolution of morphological and genomic selfing syndromes using 22 floral traits and both nuclear and plastid genomic data from 25 populations. Two independent transitions were detected representing an earlier and a more recently derived selfing lineage. The older lineage exhibited classic features of the morphological and genomic selfing syndrome. Although features of both selfing syndromes were less developed in the younger selfing lineage, they exhibited parallel development with the older selfing lineage. This finding contrasts with the prediction that some genomic changes should lag behind adaptive changes to morphological traits. Our findings highlight the value of comparative studies on the timing and extent of transitions from outcrossing to selfing between related lineages for investigating the tempo of morphological and molecular evolution.
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  • 文章类型: Journal Article
    目的:花柱二态是异型植物花的多态特征之一,其中包括两种花类型:具有长花柱和较短花药的Pin变体,和Thrum具有短的花柱和较长的花药。二态样式的形成在植物界受到关注。先前的研究表明,报春花中的CYP734A50决定了花柱长度和有限的花柱伸长率,油菜素类固醇代谢途径参与调节花柱长度。然而,尚不清楚是否有其他因素影响报春花的花型长度。
    方法:基于ForbesiiP.forbesii转录组数据筛选以Pin变体样式高表达的差异表达基因。病毒诱导的基因沉默(VIGS)被用来沉默这些基因,注射20天后观察花柱长度和花柱解剖学变化。
    结果:PfPIN5在Pin变体中高表达。当PfPIN5沉默时,通过缩短花柱细胞的长度,在Pin和长同花柱植物中,花柱长度缩短。此外,沉默CYP734A50后,PfPIN5的表达水平显着增加,花柱长度增加。结果表明,PfPIN5作为生长素外排转运蛋白基因有助于调节forbesii的花柱伸长。
    结论:结果表明,生长素途径也可能参与了Forbesii的样式形成。这为阐明紫菜花型伸长的分子机制提供了新的途径。
    OBJECTIVE: Style dimorphism is one of the polymorphic characteristics of flowers in heterostylous plants, which have two types of flowers: the pin morph, with long styles and shorter anthers, and the thrum morph, with short styles and longer anthers. The formation of dimorphic styles has received attention in the plant world. Previous studies showed that CYP734A50 in Primula determined style length and limited style elongation and that the brassinosteroid metabolic pathway was involved in regulation of style length. However, it is unknown whether there are other factors affecting the style length of Primula.
    METHODS: Differentially expressed genes highly expressed in pin morph styles were screened based on Primula forbesii transcriptome data. Virus-induced gene silencing was used to silence these genes, and the style length and anatomical changes were observed 20 days after injection.
    RESULTS: PfPIN5 was highly expressed in pin morph styles. When PfPIN5 was silenced, the style length was shortened in pin and long-homostyle plants by shortening the length of style cells. Moreover, silencing CYP734A50 in thrum morph plants increased the expression level of PfPIN5 significantly, and the style length increased. The results indicated that PfPIN5, an auxin efflux transporter gene, contributed to regulation of style elongation in P. forbesii.
    CONCLUSIONS: The results implied that the auxin pathway might also be involved in the formation of styles of P. forbesii, providing a new pathway for elucidating the molecular mechanism of style elongation in P. forbesii.
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  • 文章类型: Journal Article
    渗入是遗传变异的重要来源,可以决定物种对环境条件的适应性。然而,关于自然界基因渗入的基因组和适应性影响的确切证据仍然很少。达尔文报春花的广泛杂化区(报春花,报春花,和报春花)提供了一个独特的自然实验室,用于研究开花植物的渗入和物种边界的不同渗透性。通过对650个基因组的分析,我们提供了在土壤毒性条件下基因渗入可能赋予适应性优势的证据。我们还记录了叶绿体渗入的明确证据,物种范围内叶绿体捕获的重要前体。最后,我们提供了第一个证据表明S基因座超基因,在报春花中控制异样,不会渗入这个进化枝。我们的结果为渗入的适应性作用提供了新的见解,并证明了广泛的基因组和地理采样对于阐明物种边界的复杂性质的重要性。
    Introgression is an important source of genetic variation that can determine species adaptation to environmental conditions. Yet, definitive evidence of the genomic and adaptive implications of introgression in nature remains scarce. The widespread hybrid zones of Darwin\'s primroses (Primula elatior, Primula veris, and Primula vulgaris) provide a unique natural laboratory for studying introgression in flowering plants and the varying permeability of species boundaries. Through analysis of 650 genomes, we provide evidence of an introgressed genomic region likely to confer adaptive advantage in conditions of soil toxicity. We also document unequivocal evidence of chloroplast introgression, an important precursor to species-wide chloroplast capture. Finally, we provide the first evidence that the S-locus supergene, which controls heterostyly in primroses, does not introgress in this clade. Our results contribute novel insights into the adaptive role of introgression and demonstrate the importance of extensive genomic and geographical sampling for illuminating the complex nature of species boundaries.
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  • 文章类型: Journal Article
    Distyly在许多动物授粉的被子植物谱系中独立进化。对其分子基础的理解仅限于少数物种,主要是报春花。这里,我们研究了单个双等位基因(S基因座)超基因的遗传结构,功能相关基因的连锁群,并探索它是如何在远缘的印度若虫中进化的,以前没有研究过的开花植物谱系。我们组装了单倍型分辨的基因组,使用基于阅读覆盖率的全基因组关联研究(rb-GWAS)来定位S基因座超基因,共表达网络分析,探索支撑远端发育的基因网络,和比较基因组分析,以研究S基因座超基因的起源。我们确定了三个链接的候选S基因座基因-NinBAS1,NinKHZ2和NinS1-仅在短样式的形态中明显,并且是半合子。共表达网络分析表明,油菜素类固醇有助于短型形态中的二形性器官。比较基因组分析表明,S基因座超基因可能是通过逐步重复进化的,并受到转座因子活性的影响。我们的研究提供了对结构的新颖见解,regulation,以及在India中相对支配的超基因的进化。它还提供了高质量的基因组资源,用于未来研究杂种类群在形式和功能上惊人的进化趋同的分子机制。
    Distyly has evolved independently in numerous animal-pollinated angiosperm lineages. Understanding of its molecular basis has been restricted to a few species, primarily Primula. Here, we investigate the genetic architecture of the single diallelic locus (S-locus) supergene, a linkage group of functionally associated genes, and explore how it may have evolved in distylous Nymphoides indica, a lineage of flowering plants not previously investigated. We assembled haplotype-resolved genomes, used read-coverage-based genome-wide association study (rb-GWAS) to locate the S-locus supergene, co-expression network analysis to explore gene networks underpinning the development of distyly, and comparative genomic analyses to investigate the origins of the S-locus supergene. We identified three linked candidate S-locus genes - NinBAS1, NinKHZ2, and NinS1 - that were only evident in the short-styled morph and were hemizygous. Co-expression network analysis suggested that brassinosteroids contribute to dimorphic sex organs in the short-styled morph. Comparative genomic analyses indicated that the S-locus supergene likely evolved via stepwise duplications and has been affected by transposable element activities. Our study provides novel insight into the structure, regulation, and evolution of the supergene governing distyly in N. indica. It also provides high-quality genomic resources for future research on the molecular mechanisms underlying the striking evolutionary convergence in form and function across heterostylous taxa.
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