Plasma membrane

质膜
  • 文章类型: Journal Article
    和厚朴酚,从属于木兰植物物种的树皮提取物中提取的联苯木脂素,是一种多效化合物,表现出广泛的抗氧化剂,抗菌,抗糖尿病药,抗炎,抗聚剂,镇痛药,抗肿瘤,抗病毒和神经保护活性。和厚朴酚,是高度疏水的,溶于普通有机溶剂,但不溶于水。因此,其生物学效应可能取决于其生物活性机制。尽管和厚朴酚具有许多令人印象深刻的生物活性,其作用在生物膜水平上是未知的。了解和厚朴酚的生物活性机制可以为其治疗开发或与之相似的分子的治疗开发解锁创新观点。我已经研究了和厚朴酚分子在血浆状膜存在下的行为,并使用全原子分子动力学建立了和厚朴酚与膜成分的详细关系。在这项工作中获得的结果维持和厚朴酚具有插入膜内部的趋势;位于胆固醇氧原子附近和下方,在烃膜栅栏中;略微增加烃流动性;不与任何膜脂质特异性相互作用;并且,显著,形成聚集体。重要的是,聚集不会阻碍和厚朴酚进入膜内部。和厚朴酚的某些生物学特性可以被认可为其改变膜生物物理特性的能力,但是在溶液中建立聚集体形式可能会阻碍其临床使用。
    Honokiol, a biphenyl lignan extracted from bark extracts belonging to Magnolia plant species, is a pleiotropic compound which exhibits a widespread range of antioxidant, antibacterial, antidiabetic, anti-inflammatory, antiaggregant, analgesic, antitumor, antiviral and neuroprotective activities. Honokiol, being highly hydrophobic, is soluble in common organic solvents but insoluble in water. Therefore, its biological effects could depend on its bioactive mechanism. Although honokiol has many impressive bioactive properties, its effects are unknown at the level of the biological membrane. Understanding honokiol\'s bioactive mechanism could unlock innovative perspectives for its therapeutic development or for therapeutic development of molecules similar to it. I have studied the behaviour of the honokiol molecule in the presence of a plasma-like membrane and established the detailed relation of honokiol with membrane components using all-atom molecular dynamics. The results obtained in this work sustain that honokiol has a tendency to insert inside the membrane; locates near and below the cholesterol oxygen atom, amid the hydrocarbon membrane palisade; increases slightly hydrocarbon fluidity; does not interact specifically with any membrane lipid; and, significantly, forms aggregates. Significantly, aggregation does not impede honokiol from going inside the membrane. Some of the biological characteristics of honokiol could be accredited to its aptitude to alter membrane biophysical properties, but the establishment of aggregate forms in solution might hamper its clinical use.
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  • 文章类型: Journal Article
    甾醇在活生物体中执行必要的结构和信号功能。麦角甾醇有助于流动性,渗透性,酵母膜中蛋白质的微域形成和功能。在我们的研究中,地莫甾醇是最成功的补偿麦角甾醇在酿酒酵母中的缺乏,除了豆甾醇和谷甾醇.这三种甾醇支持细胞生长而不引起严重的形态学缺陷,不像胆固醇,7-脱氢胆固醇,月桂甾醇,胆甾醇或羊毛甾醇。连同麦角固醇,它们还能够使hem1Δ细胞的质膜电位更接近野生型水平。此外,去甲甾醇比麦角甾醇赋予酵母更高的耐热性。一些甾醇抵消了多烯的抗真菌毒性,唑类和特比萘芬对hem1Δ细胞。植物甾醇(豆甾醇,谷甾醇)和desmosterol确保了类似于麦角甾醇的hem1Δ细胞中葡萄糖诱导的H-ATPase活化,而胆固醇和7-脱氢胆固醇效果较差.外源性麦角甾醇,豆甾醇,谷甾醇,在抑制浓度的氟康唑存在下,去甲甾醇和胆固醇也改善了光滑梭菌和白色念珠菌的生长。将外源甾醇适当掺入膜中,对膜功能的副作用最小,主要受甾醇酰基链结构的影响,更少受到它们的环结构的影响。
    Sterols perform essential structural and signalling functions in living organisms. Ergosterol contributes to the fluidity, permeability, microdomain formation and functionality of proteins in the yeast membrane. In our study, desmosterol was the most successful at compensating for the lack of ergosterol in Saccharomyces cerevisiae, besides stigmasterol and sitosterol. These three sterols supported cell growth without causing severe morphological defects, unlike cholesterol, 7-dehydrocholesterol, lathosterol, cholestanol or lanosterol. Together with ergosterol, they were also able to bring the plasma membrane potential of hem1Δ cells closer to the level of the wild type. In addition, desmosterol conferred even higher thermotolerance to yeast than ergosterol. Some sterols counteracted the antifungal toxicity of polyenes, azoles and terbinafine to hem1Δ cells. Plant sterols (stigmasterol, sitosterol) and desmosterol ensured the glucose-induced activation of H+-ATPase in hem1Δ cells analogously to ergosterol, whereas cholesterol and 7-dehydrocholesterol were less effective. Exogenous ergosterol, stigmasterol, sitosterol, desmosterol and cholesterol also improved the growth of Candida glabrata and Candida albicans in the presence of inhibitory concentration of fluconazole. The proper incorporation of exogenous sterols into the membrane with minimal adverse side effects on membrane functions was mainly influenced by the structure of the sterol acyl chain, and less by their ring structures.
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  • 文章类型: Journal Article
    四冬蛋白,包括CD53和CD81,是影响膜组织的四跨膜蛋白,以调节细胞过程,包括迁移,增殖和信号。然而,目前尚不清楚四跨膜蛋白的组织功能是如何在分子水平上调节的。在这里,我们研究了最近提出的四跨膜蛋白的“开放”和“封闭”构象是否调节B细胞质膜的纳米级组织。我们产生了CD53(F44E)和CD81(4A,E219Q)代表\'封闭\'和\'开放\'构象,分别。这些CD53和CD81突变体的表面表达与野生型(WT)蛋白的表面表达相当。通过超分辨率dSTORM显微镜观察突变体四跨膜蛋白到纳米域中的定位。虽然这些纳米域的大小不受构象的影响,与相应的WT蛋白相比,“封闭”CD53的聚集分数更高,“开放”CD81的聚集分数更低。此外,缺乏CD53的敲除细胞显示其伴侣CD45成簇的可能性增加.有趣的是,与WTCD53相比,“关闭”CD53与CD45的相互作用更多。缺乏CD81会降低其伴侣CD19的簇大小,并且“封闭”CD81与CD19的相互作用比WTCD81少,但“开放”CD81不影响CD19的相互作用。然而,四跨膜蛋白构象均未对其伴侣CD19或CD45的纳米级组织产生重大影响。一起来看,CD53和CD81的构象突变差异影响它们的纳米级组织,但不是它们的伴侣蛋白的组织。这项研究通过四跨膜蛋白提高了对细胞表面纳米级组织的分子洞察力。
    Tetraspanins, including CD53 and CD81, are four-transmembrane proteins that affect the membrane organization to regulate cellular processes including migration, proliferation and signaling. However, it is unclear how the organizing function of tetraspanins is regulated at the molecular level. Here we investigated whether recently proposed \'open\' and \'closed\' conformations of tetraspanins regulate the nanoscale organization of the plasma membrane of B cells. We generated conformational mutants of CD53 (F44E) and CD81 (4A, E219Q) that represent the \'closed\' and \'open\' conformation, respectively. Surface expression of these CD53 and CD81 mutants was comparable to that of wildtype (WT) protein. Localization of mutant tetraspanins into nanodomains was visualized by super-resolution dSTORM microscopy. Whereas the size of these nanodomains was unaffected by conformation, the clustered fraction of \'closed\' CD53 was higher and of \'open\' CD81 lower than respective WT protein. In addition, knock-out cells lacking CD53 showed an increased likelihood of clustering of its partner CD45. Interestingly, \'closed\' CD53 interacted more with CD45 than WT CD53. Absence of CD81 lowered the cluster size of its partner CD19, and \'closed\' CD81 interacted less with CD19 than WT CD81, but \'open\' CD81 did not affect CD19 interaction. However, none of the tetraspanin conformations made significant impact on the nanoscale organization of their partners CD19 or CD45. Taken together, conformational mutations of CD53 and CD81 differentially affect their nanoscale organization, but not the organization of their partner proteins. This study improves the molecular insight into cell surface nanoscale organization by tetraspanins.
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  • 文章类型: Journal Article
    光动力疗法(PDT)是临床上用于皮肤病学的光化学治疗方式,眼科和肿瘤学应用。Pheoa用作模型光敏剂,以其游离形式或包封在聚(环氧乙烷)-嵌段-聚(ε-己内酯)(PEO-PCL)聚合物胶束内。嵌段共聚物胶束是水溶性生物相容性纳米容器,具有递送疏水性药物的巨大潜力。在整个实验中还测试了空的PEO-PCL胶束。目的是在细胞结构方面对游离和包封的Pheoa诱导的人类结直肠肿瘤HCT-116细胞反应进行体外研究。质膜交换,线粒体功能,和代谢紊乱。在校准的PDT协议中,封装增强了Pheo的渗透(流式细胞术,共聚焦显微镜)和细胞死亡(Prestoblue测定),引起细胞形态(SEM)和细胞骨架组织(共聚焦)的大量变化,线粒体功能障碍和完整性丧失(TEM),穿过质膜的快速大量离子通量(ICP-OES,离子色谱法),和代谢改变,包括增加水平的氨基酸和胆碱衍生物(1HNMR)。详细的调查提供了对封装的Pheo-PDT的多方面影响的见解,强调在了解治疗结果时同时考虑光敏剂及其递送系统的重要性。这项研究还提出了关于空纳米载体本身的更广泛影响的问题,并鼓励对其生物学效应进行更全面的探索。
    Photodynamic therapy (PDT) is a photochemical therapeutic modality used clinically for dermatological, ophthalmological and oncological applications. Pheo a was used as a model photosensitizer, either in its free form or encapsulated within poly(ethylene oxide)-block-poly(ε-caprolactone) (PEO-PCL) polymer micelles. Block copolymer micelles are water-soluble biocompatible nanocontainers with great potential for delivering hydrophobic drugs. Empty PEO-PCL micelles were also tested throughout the experiments. The goal was to conduct an in vitro investigation into human colorectal tumor HCT-116 cellular responses induced by free and encapsulated Pheo a in terms of cell architecture, plasma membrane exchanges, mitochondrial function, and metabolic disturbances. In a calibrated PDT protocol, encapsulation enhanced Pheo a penetration (flow cytometry, confocal microscopy) and cell death (Prestoblue assay), causing massive changes to cell morphology (SEM) and cytoskeleton organization (confocal), mitochondrial dysfunction and loss of integrity (TEM), rapid and massive ion fluxes across the plasma membrane (ICP-OES, ion chromatography), and metabolic alterations, including increased levels of amino acids and choline derivatives (1H NMR). The detailed investigation provides insights into the multifaceted effects of encapsulated Pheo-PDT, emphasizing the importance of considering both the photosensitizer and its delivery system in understanding therapeutic outcomes. The study also raises questions as to the broader impact of empty nanovectors per se, and encourages a more comprehensive exploration of their biological effects.
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  • 文章类型: Journal Article
    光动力疗法(PDT)是一种微创的癌症治疗方法,其作用之一是膜脂的氧化。然而,PDT过程中脂质膜生物物理特性的变化研究甚少。在这项工作中,我们研究了PDT对培养物和肿瘤异种移植物中癌细胞膜微粘度的影响。使用具有粘度敏感转子BODIPY2的荧光寿命成像显微镜(FLIM)可视化膜微粘度。发现使用氯e6基光敏剂的PDT引起了快速,细胞和体内膜微粘度的稳定升高。导致微粘度增加的拟议机制是活性氧引起的脂质过氧化,导致磷脂酰胆碱和膜中不饱和脂肪酸的含量减少。我们的结果表明,微粘度的增加是导致PDT期间肿瘤细胞损伤的重要因素。
    Photodynamic therapy (PDT) is a minimally invasive method for cancer treatment, one of the effects of which is the oxidation of membrane lipids. However, changes in biophysical properties of lipid membranes during PDT have been poorly explored. In this work, we investigated the effects of PDT on membrane microviscosity in cancer cells in the culture and tumor xenografts. Membrane microviscosity was visualized using fluorescence lifetime imaging microscopy (FLIM) with a viscosity-sensitive rotor BODIPY2. It was found that PDT using chlorine e6-based photosensitizer Photoditazine caused a quick, steady elevation of membrane microviscosity both in cellulo and in vivo. The proposed mechanisms responsible for the increase in microviscosity was lipid peroxidation by reactive oxygen species that resulted in a decrease of phosphatidylcholine and the fraction of unsaturated fatty acids in the membranes. Our results suggest that the increased microviscosity is an important factor that contributes to tumor cell damage during PDT.
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  • 文章类型: Journal Article
    建议食用橄榄油以维持健康生活的原因之一是,它有可能通过膳食脂质对膜进行修饰来诱导强大的脂质重塑。这种重塑可能,反过来,调节必需的脂质-蛋白质相互作用,同时保持准确的跨膜蛋白/结构域取向。油酸,橄榄油中的主要化合物,已被建议作为离子通道功能的调节剂。在这项研究中,我们探讨了这种脂质是否可以挽救突变的跨膜蛋白的运输。在我们最初的方法中,我们用橄榄油或油酸补充了表达使用绿色荧光蛋白(CNG-GFP)标记的环核苷酸通道的HEK-293细胞的细胞培养基。除了野生型通道,我们还表达了R272Q和R278W突变通道,两个与视网膜病变相关的非功能性细胞内保留通道。我们在由内而外的配置中使用荧光显微镜和膜片钳来评估细胞定位和测试通道功能的变化。我们的结果表明,橄榄油和油酸促进了环核苷酸门控R272Q突变通道向质膜的运输,使它们具有电生理功能。因此,我们的发现揭示了橄榄油作为膜蛋白交通诱导因子的新特性。
    One of the reasons to suggest olive oil consumption for a healthy life is its potential to induce robust lipidomic remodeling through membrane modification by dietary lipids. This remodeling might, in turn, modulate essential lipid-protein interactions while maintaining accurate transmembrane protein/domain orientation. Oleic acid, the primary compound in olive oil, has been suggested as a modulator of ion channel function. In this study, we explored whether this lipid could rescue the trafficking of mutated transmembrane proteins. In our initial approach, we supplemented the cell culture medium of HEK-293 cells expressing cyclic nucleotide channels tagged using green fluorescent protein (CNG-GFP) with olive oil or oleic acid. In addition to wild-type channels, we also expressed R272Q and R278W mutant channels, two non-functional intracellularly retained channels related to retinopathies. We used fluorescence microscopy and patch-clamp in the inside-out configuration to assess changes in the cell localization and function of the tested channels. Our results demonstrated that olive oil and oleic acid facilitated the transport of cyclic nucleotide-gated R272Q mutant channels towards the plasma membrane, rendering them electrophysiologically functional. Thus, our findings reveal a novel property of olive oil as a membrane protein traffic inductor.
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  • 文章类型: Journal Article
    细胞(血浆)膜富含许多受体,配体,酶,和磷脂在细胞-细胞和细胞-细胞外基质相互作用中起重要作用,例如,组织发育和修复。我们先前表明,质膜纳米碎片(PMNFs)在体内充当骨形成的成核位点,并在1天内诱导体外矿化。在这项研究中,我们优化了生成方法,隔离,并应用PMNFs作为无细胞治疗剂加速骨缺损修复。PMNFs分离自不同的小鼠细胞系(软骨细胞,成骨细胞,和成纤维细胞),预处理,冻干,随后移植到小鼠(n=75)的2mm临界大小的颅骨缺损中。来自软骨细胞的PMNFs,经过3天的预孵化,在2周内显著加速骨修复,通过巨噬细胞的协调吸引,内皮细胞,和成骨细胞到达愈合部位。体外实验证实PMNFs增强细胞粘附。PMNF与磷脂酰丝氨酸的疗效比较,无定形磷酸钙(ACP),和活细胞证实了PMNFs促进加速骨修复的独特能力。重要的是,PMNFs在6周后促进再生骨与天然组织几乎完全整合(%非整合骨面积=15.02),与ACP移植的部分整合(非整合骨面积百分比=56.10;p<0.01,学生检验)形成对比。维氏显微硬度测试表明,6周后(30.10±1.75)的再生骨显示出与天然骨(31.07±2.46)相似的硬度。总之,这是第一项研究证明细胞膜可以是一种有前途的无细胞材料,具有多方面的生物功能特性,可促进骨修复。重要声明:·第一次,细胞的细胞(血浆)膜用作骨修复的无细胞材料。•软骨细胞的质膜在2周内促进快速骨修复,新形成的骨与周围的天然组织完全融合。•软骨细胞的质膜表现出多方面的影响,强烈促进巨噬细胞的吸引力,内皮细胞和成骨细胞到达愈合部位。
    The cell (plasma) membrane is enriched with numerous receptors, ligands, enzymes, and phospholipids that play important roles in cell-cell and cell-extracellular matrix interactions governing, for instance, tissue development and repair. We previously showed that plasma membrane nanofragments (PMNFs) act as nucleation sites for bone formation in vivo, and induce in vitro mineralization within 1 day. In this study, we optimized the methods for generating, isolating, and applying PMNFs as a cell-free therapeutic to expedite bone defect repair. The PMNFs were isolated from different mouse cell lines (chondrocytes, osteoblasts, and fibroblasts), pre-conditioned, lyophilized, and subsequently transplanted into 2 mm critical-sized calvarial defects in mice (n = 75). The PMNFs from chondrocytes, following a 3-day pre-incubation, significantly accelerated bone repair within 2 weeks, through a coordinated attraction of macrophages, endothelial cells, and osteoblasts to the healing site. In vitro experiments confirmed that PMNFs enhanced cell adhesion. Comparison of the PMNF efficacy with phosphatidylserine, amorphous calcium phosphate (ACP), and living cells confirmed the unique ability of PMNFs to promote accelerated bone repair. Importantly, PMNFs promoted nearly complete integration of the regenerated bone with native tissue after 6 weeks (% non-integrated bone area = 15.02), contrasting with the partial integration (% non-integrated bone area = 56.10; p < 0.01, Student\'s test) with transplantation of ACP. Vickers microhardness tests demonstrated that the regenerated bone after 6 weeks (30.10 ± 1.75) exhibited hardness similar to native bone (31.07 ± 2.46). In conclusion, this is the first study to demonstrate that cell membrane can be a promising cell-free material with multifaceted biofunctional properties that promote accelerated bone repair. STATEMENT OF SIGNIFICANCE.
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  • 文章类型: Journal Article
    体外获能可以更好地了解受精的潜在机制,并开发改进的生殖技术以提高猪的生育率。Tyrodes白蛋白乳酸丙酮酸盐(TALP)和改良的KrebsRingers肉汤(m-KRB)是两种在研究实验中通常用于诱导公猪精子获能的媒介(Cañón-Beltrán等。,热遗传学,198、2023和231;Oberlender等人。,兽医档案,44,2012和201;Sahoo等人。,国际生物大分子杂志,241、2023和124502)。此外,了解猪精子在获能期不同时间的形态和功能变化可能有助于开发新技术,以改善精子质量和增加产仔数。进行这项研究是为了研究Tyrode白蛋白乳酸丙酮酸盐和改良的KrebsRingers肉汤培养基在三个不同孵育时期对HD-K75公猪精子体外获能的影响。四个临床健康的人共有24次射精,10-12月龄HD-K75公猪,选择了在ICAR-全印度协调研究项目(AICRP)中维持的猪。使用便携式假人通过“简单拳头”方法收集精液。精液样本体积为200毫升,选择103×106个精子/ml浓度和70%的初始运动性,并分成两部分悬浮在TALP和m-KRB培养基中,分别,并在37°C下孵育5小时。开创性参数,即。精子活力,在孵育0、3和5小时时,对样品中的质膜完整性和顶体完整性进行了评估。这项研究表明,在活顶体反应(p<.05)和宿主反应(p<.01)精子的培养基之间存在显着差异,而在获能期之间,在过度激活的精子中观察到显着(p<.01)变化,活的顶体反应精子,宿主反应精子,FITC标记的PSA,细胞外蛋白和精子胆固醇。在总磷脂中观察到非显著变化。TALP显示对精子活力的总体效果更好,猪精子的质膜和顶体完整性。从这项研究中,可以得出结论,TALP和m-KRB培养基对诱导HD-K75公猪精子的获能是有益的。TALP介质,然而,对精子活力有更好的影响,猪精子的质膜和顶体完整性。在三个不同的时期中,3小时获能期显著(p<.01)导致精子活力的发生率更高,HD-K75公猪精子的质膜和顶体完整性。
    In vitro capacitation allows for a greater understanding of the mechanisms underlying fertilization and the development of improved reproductive techniques for improving fertility rates in porcine. Tyrodes albumin lactate pyruvate (TALP) and modified Krebs Ringers Broth (m-KRB) are two medias that are commonly used in research experiments to induce capacitation in boar spermatozoa (Cañón-Beltrán et al., Theriogenology, 198, 2023 and 231; Oberlender et al., Archivos de Medicina Veterinaria, 44, 2012 and 201; Sahoo et al., International Journal of Biological Macromolecules, 241, 2023 and 124502). Moreover, understanding the morphological and functional changes in boar spermatozoa at different hours of capacitation periods might aid in the development of novel techniques for improving sperm quality and increasing the litter size. This study was carried out to investigate the effect of Tyrode albumin lactate pyruvate and modified Krebs Ringers Broth media on in vitro capacitation of HD-K75 boar spermatozoa at three different periods of incubation. A total of 24 ejaculate from four clinically healthy, 10-12 months aged HD-K75 boars, maintained at ICAR-All India Coordinated Research Project (AICRP) on pig were selected. Semen was collected by \'Simple fist\' method using a portable dummy. The semen samples having 200 mL volume, 103 × 106 spermatozoa/ml concentration and 70% initial motility were selected and split into two parts and suspended in TALP and m-KRB media, respectively, and incubated for 5 h at 37°C. Seminal parameters viz. sperm viability, plasma membrane integrity and acrosomal integrity were estimated in the samples at 0, 3 and 5 h of incubation. This study revealed that there was significant variation between media in live acrosome-reacted (p < .05) and HOST-reacted (p < .01) spermatozoa, while between capacitation periods significant (p < .01) variation was observed in hyperactivated spermatozoa, live acrosome-reacted spermatozoa, HOST-reacted spermatozoa, FITC-labelled PSA, extracellular protein and sperm cholesterol. Non-significant variation was observed in total phospholipid. TALP showed overall better consequence on sperm viability, plasma membrane and acrosomal integrity of boar spermatozoa. From this study, it could be concluded that both TALP and m-KRB media were virtuous to induce capacitation in HD-K75 boar spermatozoa. TALP media, however, had a better effect on sperm viability, plasma membrane and acrosomal integrity of boar spermatozoa. Out of the three different periods, 3 h capacitation period resulted in significantly (p < .01) higher incidence of sperm viability, plasma membrane and acrosomal integrity in HD-K75 boar spermatozoa.
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  • 文章类型: Journal Article
    在这项工作中,描述了使用串行块面扫描电子显微镜观察到的HeLa细胞质膜的无监督体积语义实例分割。在每个具有8192X8192像素的518个切片的3D堆叠的不同切片处分割图像的树脂背景。背景被用来创建距离图,这有助于根据每个切片的细胞大小对细胞进行识别和排名。在不同切片处检测到的细胞的质心被链接以将它们识别为跨越多个切片的单个细胞。这些细胞的一个子集,即,选择最大的和不靠近边缘的进行进一步处理。然后将所选择的细胞自动裁剪到被视为细胞实例的2000X2000X300体素的更小的感兴趣区域。然后,对于每一卷,细胞核被分割,然后通过一系列传统的图像处理步骤将细胞与任何邻近的细胞分离,这些图像处理步骤跟随质膜。对先前选择的所有感兴趣区域重复分割过程。对于一个有真相的牢房,该算法在准确性(AC)和Jaccard相似性指数(JI)方面提供了出色的结果:核:JI=0.9665,AC=0.9975,包含核的细胞JI=0.8711,AC=0.9655,不包含核的细胞JI=0.8094,AC=0.9629。质膜分割算法的局限性在于背景的存在。在细胞紧密堆积的样本中,这可能不可用。当测试这些条件时,核包络的分割仍然是可能的。所有的代码和数据都是通过GitHub公开发布的,Zenodo和EMPIAR。
    In this work, an unsupervised volumetric semantic instance segmentation of the plasma membrane of HeLa cells as observed with serial block face scanning electron microscopy is described. The resin background of the images was segmented at different slices of a 3D stack of 518 slices with 8192 × 8192 pixels each. The background was used to create a distance map, which helped identify and rank the cells by their size at each slice. The centroids of the cells detected at different slices were linked to identify them as a single cell that spanned a number of slices. A subset of these cells, i.e., the largest ones and those not close to the edges were selected for further processing. The selected cells were then automatically cropped to smaller regions of interest of 2000 × 2000 × 300 voxels that were treated as cell instances. Then, for each of these volumes, the nucleus was segmented, and the cell was separated from any neighbouring cells through a series of traditional image processing steps that followed the plasma membrane. The segmentation process was repeated for all the regions of interest previously selected. For one cell for which the ground truth was available, the algorithm provided excellent results in Accuracy (AC) and the Jaccard similarity Index (JI): nucleus: JI =0.9665, AC =0.9975, cell including nucleus JI =0.8711, AC =0.9655, cell excluding nucleus JI =0.8094, AC =0.9629. A limitation of the algorithm for the plasma membrane segmentation was the presence of background. In samples with tightly packed cells, this may not be available. When tested for these conditions, the segmentation of the nuclear envelope was still possible. All the code and data were released openly through GitHub, Zenodo and EMPIAR.
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  • 文章类型: Journal Article
    我们分析了叶面喷施氨基酸的效果,壳聚糖(CHS)和壳聚糖与氨基酸脯氨酸的纳米复合材料(NCs),L-半胱氨酸和甘氨酸甜菜碱(CHS-ProNCs;CHS-CysNCs,CHS-GBNC,分别)在控制温度(20°C)和冷却条件(4°C)下生长的卷心莴苣的生理和生化参数的变化。从植物中提取的磷脂单层(PL)的物理化学参数显示了处理对单层性质的影响,即,包装密度和灵活性。我们观察到4°C时脯氨酸的积累增加,和大多数分析的变体中糖浓度的差异是温度降低和/或使用有机化合物的结果。与20°C相比,4°C的温度导致L-抗坏血酸水平显着增加。根据温度和用测试的有机化合物处理,谷胱甘肽(GSH)含量也存在差异。负载有Pro和GB的CHSNC在胁迫温度条件下有效增加酚的量。我们注意到,用Cys引发后,植物在4°C时的抗氧化活性显着增加,CHS-CysNCs,Pro和CHS-ProNC,CHS纳米复合材料在这方面更有效。低温胁迫和叶面喷施生菜与各种有机化合物都会引起抗氧化酶活性的变化。两种形式的歧化酶(SOD),铁超氧化物歧化酶(FeSOD)和铜/锌超氧化物歧化酶(Cu/ZnSOD),在卷心莴苣幼苗叶子的提取物中鉴定。所测试的有机化合物的应用,单独或与CHS组合,在受控温度条件下生长的植物中丙二醛(MDA)的含量增加。低温引起MDA含量的增加,但是一些有机化合物减轻了低温的影响。与经受20°C的植物相比,暴露于冷藏的植物的鲜重降低。然而,与相应的对照样品相比,测试化合物在4°C下引起鲜重降低。一个有趣的例外是使用Cys,在20°C和4°C下生长的植物的鲜重差异无统计学意义。Cys申请后,冷冻植物的干重大于冷冻对照植物的干重,但也大于该组中其他处理植物的干重。据我们所知,这是第一份报告,证明工程壳聚糖-氨基酸纳米复合材料可以作为创新的保护剂,以减轻作物的低温胁迫的影响。
    We analyzed the effects of foliar spraying with amino acids, chitosan (CHS) and nanocomposites (NCs) of chitosan with the amino acids proline, L-cysteine and glycine betaine (CHS-Pro NCs; CHS-Cys NCs, CHS-GB NCs, respectively) on the changes in the physiological and biochemical parameters of iceberg lettuce grown at the control temperature (20 °C) and under chilling conditions (4 °C). The physicochemical parameters of the phospholipid monolayers (PLs) extracted from plants showed the effects of the treatments on the properties of the monolayers, namely, the packing density and flexibility. We observed increased accumulation of proline at 4 °C, and differences in the concentrations of sugars in most of the analyzed variants were a consequence of the lowered temperature and/or the use of organic compounds. A temperature of 4 °C caused a significant increase in the L-ascorbic acid level compared with that at 20 °C. Differences were also found in glutathione (GSH) content depending on the temperature and treatment with the tested organic compounds. CHS NCs loaded with Pro and GB were effective at increasing the amount of phenols under stress temperature conditions. We noted that a significant increase in the antioxidant activity of plants at 4 °C occurred after priming with Cys, CHS-Cys NCs, Pro and CHS-Pro NCs, and the CHS nanocomposites were more effective in this respect. Both low-temperature stress and foliar spraying of lettuce with various organic compounds caused changes in the activity of antioxidant enzymes. Two forms of dismutase (SOD), iron superoxide dismutase (FeSOD) and copper/zinc superoxide dismutase (Cu/ZnSOD), were identified in extracts from the leaves of iceberg lettuce seedlings. The application of the tested organic compounds, alone or in combination with CHS, increased the amount of malondialdehyde (MDA) in plants grown under controlled temperature conditions. Chilling caused an increase in the content of MDA, but some organic compounds mitigated the impact of low temperature. Compared with that of plants subjected to 20 °C, the fresh weight of plants exposed to chilling decreased. However, the tested compounds caused a decrease in fresh weight at 4 °C compared with the corresponding control samples. An interesting exception was the use of Cys, for which the difference in the fresh weight of plants grown at 20 °C and 4 °C was not statistically significant. After Cys application, the dry weight of the chilled plants was greater than that of the chilled control plants but was also greater than that of the other treated plants in this group. To our knowledge, this is the first report demonstrating that engineered chitosan-amino acid nanocomposites could be applied as innovative protective agents to mitigate the effects of chilling stress in crop plants.
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