PAMPA

PAMPA
  • 文章类型: Journal Article
    火在草原中起着关键作用,确定物种的分布和进化以及与邻近生态系统的边界。全社区对火灾反应的证据主要基于分类学和功能描述符,而系统发育维度被忽视了。在这里,我们评估了草地植物群落的分类学和系统发育结构如何响应火灾以来的时间(TSF)梯度。我们在不同的TSF下对巴西南部的12个社区进行了采样,并计算了分类物种丰富度(S)和优势度(D),系统发育多样性(PD),和平均系统发育距离(MPD)。我们使用结构方程模型来测试环境梯度与社区描述符之间的关系。TSF较长的群落具有较高的PD和MPD,但物种丰富度较低,分类优势增加。这些地点以单子叶植物为主,特别是C4草,但也提出了独特的进化,而最近烧毁的地点具有较低的分类学优势,并且更多的物种分布在更广泛的分支中。我们的结果表明,这些方案是可以互换的,并且取决于火灾管理。火适应不受系统发育相关性的限制,与以前的热带大草原发现形成对比,并表明南美的温带和热带非森林生态系统对火灾的反应不同,可能是由于不同的进化史。
    Fire plays a key role in grasslands, determining the distribution and evolution of species and boundaries with neighboring ecosystems. Evidence of community-wide responses to fire is largely based on taxonomic and functional descriptors, while the phylogenetic dimension is overlooked. Here we evaluated how the taxonomic and phylogenetic structure of grassland plant communities responded to a time since fire (TSF) gradient. We sampled 12 communities in Southern Brazil under varying TSF and calculated taxonomic species richness (S) and dominance (D), phylogenetic diversity (PD), and mean phylogenetic distances (MPD). We used Structural Equation Models to test the relationships between the environmental gradient and community descriptors. Communities with longer TSF presented higher PD and MPD but lower species richness and increased taxonomic dominance. These sites were dominated by monocots, specifically C4 grasses, but also presented exclusive clades, whereas recently-burned sites presented lower taxonomic dominance and more species distributed in a wider variety of clades. Our results indicate that these scenarios are interchangeable and dependent on fire management. Fire adaptation was not constrained by phylogenetic relatedness, contrasting with previous findings for tropical savannahs and indicating that temperate and tropical non-forest ecosystems from South America respond differently to fire, possibly due to different evolutionary histories.
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  • 文章类型: Journal Article
    传统上,开发吸入药物制剂依赖于反复试验,然而,最近的技术进步加深了对吸入生物制药的理解,即影响肺部药物暴露率和程度的过程。这些知识导致了预测药物体内行为的新体外模型的发展,促进现有配方的增强和新型配方的开发。我们先前的研究检查了模拟肺液(SLF)如何影响吸入药物的溶解度。在这个基础上,我们旨在探讨含粘液的肺粘膜模型中药物的溶出度和通透性。因此,四种活性药物成分(API)的渗透,硫酸沙丁胺醇(SS),噻托溴铵(TioBr),富马酸福莫特罗(FF)和布地奈德(BUD),在猪粘液覆盖的Calu-3细胞层中检测,在气液界面(ALI)培养或浸没在液体覆盖(LC)培养系统中。对BUD和FF的进一步分析涉及它们在粘液覆盖的PAMPA系统中的运输。最后,使用“简单”Transwell和复杂的Dissolvit®设备比较了它们在Symbicort®雾化后的溶出度,单独或在存在猪粘液或聚合物-脂质粘液模拟物的情况下。猪粘液的存在影响吸入药物的渗透性和溶解。例如,在Calu-3ALI模型中,SS的渗透率降低了10倍,而在LC和ALI设置中,BUD的渗透率降低了2倍。溶出方法的比较表明,药物溶出性能高度依赖于设置,观察到与DissolvIt®相比,Transwell系统的释放效率降低,变异性更高。总的来说,结果表明,在早期药物产品开发中,可以使用相对简单的方法来区分制剂。然而,对于更高级的阶段,需要复杂的方法。至关重要的是,很明显,在开发用于吸入的药物和制剂时,不应忽视粘液的影响及其成分的选择在体外测试溶出度和渗透性。
    Traditionally, developing inhaled drug formulations relied on trial and error, yet recent technological advancements have deepened the understanding of \'inhalation biopharmaceutics\' i.e. the processes that occur to influence the rate and extent of drug exposure in the lungs. This knowledge has led to the development of new in vitro models that predict the in vivo behavior of drugs, facilitating the enhancement of existing formulation and the development of novel ones. Our prior research examined how simulated lung fluid (SLF) affects the solubility of inhaled drugs. Building on this, we aimed to explore drug dissolution and permeability in lung mucosa models containing mucus. Thus, the permeation of four active pharmaceutical ingredients (APIs), salbutamol sulphate (SS), tiotropium bromide (TioBr), formoterol fumarate (FF) and budesonide (BUD), was assayed in porcine mucus covered Calu-3 cell layers, cultivated at an air liquid interface (ALI) or submerged in a liquid covered (LC) culture system. Further analysis on BUD and FF involved their transport in a mucus-covered PAMPA system. Finally, their dissolution post-aerosolization from Symbicort® was compared using \'simple\' Transwell and complex DissolvIt® apparatuses, alone or in presence of porcine mucus or polymer-lipid mucus simulant. The presence of porcine mucus impacted both permeability and dissolution of inhaled drugs. For instance, permeability of SS was reduced by a factor of ten in the Calu-3 ALI model while the permeability of BUD was reduced by factor of two in LC and ALI setups. The comparison of dissolution methodologies indicated that drug dissolution performance was highly dependent on the setup, observing decreased release efficiency and higher variability in Transwell system compared to DissolvIt®. Overall, results demonstrate that relatively simple methodologies can be used to discriminate between formulations in early phase drug product development. However, for more advanced stages complex methods are required. Crucially, it was clear that the impact of mucus and selection of its composition in in vitro testing of dissolution and permeability should not be neglected when developing drugs and formulations intended for inhalation.
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  • 文章类型: Journal Article
    DNA促旋酶和拓扑异构酶IV在复制过程中保持DNA的正确结构中起着重要作用,并且它们已被鉴定为抗菌药物发现中的有效靶标。药物动力学特性不足是药物发现过程中许多失败的原因,并且在该过程的早期阶段对其进行估计会使获得有用候选药物的机会最大化。使用两个体外测试-平行人工膜通透性测定(PAMPA)和生物颗粒胶束色谱(BMC)估计了选定的13种双DNA促旋酶和拓扑异构酶IV抑制剂的被动胃肠道吸收。由于获得的结果之间具有良好的相关性,仅使用BMC估计其余10种化合物的被动胃肠道吸收。有了这个实验装置,这是可能的,以确定化合物的保留因子(K)和最高预期的被动胃肠道吸收的高值,和具有低k值的化合物,预测其被动胃肠道吸收低。通过创建多元线性回归(MLR)进行定量结构保留关系(QSRR)建模,偏最小二乘(PLS)和支持向量机(SVM)模型。鉴定了对保留因子影响最大的描述符,它们的解释可用于设计具有改善的被动胃肠道吸收的新化合物。
    DNA gyrase and topoisomerase IV play significant role in maintaining the correct structure of DNA during replication and they have been identified as validated targets in antibacterial drug discovery. Inadequate pharmacokinetic properties are responsible for many failures during drug discovery and their estimation in the early phase of this process maximizes the chance of getting useful drug candidates. Passive gastrointestinal absorption of a selected group of thirteen dual DNA gyrase and topoisomerase IV inhibitors was estimated using two in vitro tests - parallel artificial membrane permeability assay (PAMPA) and biopartitioning micellar chromatography (BMC). Due to good correlation between obtained results, passive gastrointestinal absorption of remaining ten compounds was estimated using only BMC. With this experimental setup, it was possible to identify compounds with high values of retention factors (k) and highest expected passive gastrointestinal absorption, and compounds with low values of k for which low passive gastrointestinal absorption is predicted. Quantitative structure-retention relationship (QSRR) modelling was performed by creating multiple linear regression (MLR), partial least squares (PLS) and support vector machines (SVM) models. Descriptors with the highest influence on retention factor were identified and their interpretation can be used for the design of new compounds with improved passive gastrointestinal absorption.
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  • 文章类型: Journal Article
    平行人工膜通透性测定(PAMPA)被广泛用于评估药物研究中实验药物的生物膜通透性。然而,很少有研究报告使用PAMPA来测量制药领域以外的环境关注化学品(CEC)的膜渗透性,其中许多药物在物理化学性质上与药物有很大不同。我们在一致的条件下将PAMPA方法模拟胃肠道(PAMPA-GIT)和血脑屏障(PAMPA-BBB)膜应用于51个CEC,包括一些药品。实施了向后逐步多元线性回归,以探索PAMPA-GIT和PAMPA-BBB与亚伯拉罕溶质描述符测得的渗透率差异之间的相关性。此外,通过比较预测和测量的渗透率结果来评估先前报道的计算机模型。PAMPA-GIT和PAMPA-BBB实验渗透率结果吻合较好。向后逐步多元线性回归确定,在预测PAMPA-GIT和PAMPA-BBB之间的差异时,摩尔屈光度和极化率在0.10水平上显着。计算机模拟模型表现良好-大多数化合物的预测渗透率在实验测量值的两倍之内。我们发现,与大多数药物相比,CEC对PAMPA方法具有较低的溶解度和较低的稳定性。
    The parallel artificial membrane permeability assay (PAMPA) is widely used for estimating biomembrane permeabilities of experimental drugs in pharmaceutical research. However, there are few reports of studies using PAMPA to measure membrane permeabilities of chemicals of environmental concern (CECs) outside the pharmaceutical domain, many of which differ substantially from drugs in their physicochemical properties. We applied PAMPA methods simulating gastrointestinal (PAMPA-GIT) and blood-brain barrier (PAMPA-BBB) membranes under consistent conditions to 51 CECs, including some pharmaceuticals. A backward stepwise multivariate linear regression was implemented to explore the correlation between the differences of measured permeabilities from PAMPA-GIT and PAMPA-BBB and Abraham solute descriptors. In addition, a previously reported in silico model was evaluated by comparing predicted and measured permeability results. PAMPA-GIT and PAMPA-BBB experimental permeability results agreed relatively well. The backward stepwise multivariate linear regression identified excess molar refraction and polarizability to be significant at the 0.10 level in predicting the differences between PAMPA-GIT and PAMPA-BBB. The in silico model performed well - with predicted permeability of most compounds within two-fold of experimentally measured values. We found that CECs pose experimental challenges to the PAMPA method in terms of having lower solubility and lower stability compared to most drugs.
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  • 文章类型: Journal Article
    在这项研究中,我们通过实验和计算研究探索了可光可移动的邻硝基苄基(oNB)基团作为操纵膜通透性和调节线性肽构象的工具的潜力。我们发现一个或多个oNB基团的引入显着增加了渗透性并改变了构象,与相应的未修饰的肽相比。我们彻底调查了肽长度的影响,ONB组的数量,ONB插入位置,并通过平行人工膜通透性测定(PAMPA)在被动膜通透性上引入N端和C端保护基团。含有一个或两个oNB基团的肽的光反应以中等至高的产量干净地进行,释放未受保护的亲本线性肽。ONB修饰的肽显示出顺式/反式构象平衡,而在光解之后,未保护的线性肽仅显示反式酰胺构象。此外,对ONB修饰肽和N-甲基化肽进行了全面比较,包括构象分析和物理化学性质。N-取代的肽有利于折叠样结构,这可能有助于改善渗透率。
    In this study, we explored the potential of the photoremovable o-nitrobenzyl (oNB) group as a tool to manipulate the membrane permeability and regulate the conformation of linear peptides by means of experimental and computational studies. We found that the introduction of one or more oNB groups markedly increased the permeability and altered the conformation, as compared to the corresponding unmodified peptides. We thoroughly investigated the impact of peptide length, number of oNB group, oNB insertion position, and introduction of N- and C-terminal protecting groups on the passive membrane permeability by means of parallel artificial membrane permeability assay (PAMPA). Photoreaction of peptides containing one or two oNB groups proceeded cleanly in moderate to high yields, releasing the unprotected parent linear peptide. The oNB-modified peptides showed a cis/trans conformational equilibrium, while after photolysis, the unprotected linear peptides showed only the trans-amide conformation. Furthermore, a comprehensive comparison of oNB-modified peptides and N-methylated peptides was conducted, encompassing conformational analysis and physicochemical properties. N-Substituted peptides favored a folded-like structure, which may contribute to the improvement in permeability.
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  • 文章类型: Journal Article
    已经评估了五种体外物理化学系统,以模拟中性化合物的皮肤渗透的能力:在两种不同的PAMPA膜中的渗透,经典的辛醇-水分配系数,和两个仿生色谱系统,一个基于cerasome电动色谱,另一个基于反相液相色谱测量。已通过不同的比较参数将上述系统的溶剂化参数模型方程的系数与皮肤渗透过程的系数进行了比较。此外,一种预测物理化学系统是否能够令人满意地模拟生物系统的方法,仅仅通过对方程系数的分析就得到了发展。结果表明,两种PAMPA系统是直接模拟中性化合物皮肤渗透的良好选择。相反,其他三个系统需要一个音量校正项来提供令人满意的仿真。然而,修正后,所有评估的系统都显示出类似的模拟皮肤渗透的能力,正如预测的那样。
    Five in vitro physicochemical systems have been evaluated in terms of its ability to emulate the skin permeation of neutral compounds: the permeation in two different PAMPA membranes, the classical octanol-water partition coefficient, and two biomimetic chromatography systems, one based in cerasome electrokinetic chromatography and another based in reversed-phase liquid chromatography measurements. The coefficients of the solvation parameter model equation of the mentioned systems have been compared to the ones of the skin permeation process through different comparison parameters. Moreover, a method to predict whether a physicochemical system is able to emulate satisfactorily a biological one, just by the analysis of the equation coefficients has been developed. Results reveal that the two PAMPA systems are a good choice to emulate directly the skin permeation of neutral compounds. Instead, the other three systems need a volume correction term to provide a satisfactory emulation. However, after the correction, all the evaluated systems show a similar ability to emulate well skin permeation, as predicted.
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  • 文章类型: Journal Article
    在本研究中,聚合物胶束的发展,以提高肠通透性的OleaeuropaeaL.leaf提取物具有高含量的总多酚(49%w/w),41%w/w对应于橄榄苦苷的量。进行预制剂研究以获得具有高提取物负载能力的稳定制剂。冷冻干燥过程被认为改善了制剂在储存期间的稳定性。胶束在物理和化学性质方面进行了表征,封装效率,稳定性,和体外释放。优化后的系统由15mg/mL的提取物组成,20mg/mL的PluronicL121,20mg/mL的PluronicF68和10mg/mL的D-α-生育酚聚乙二醇琥珀酸酯(TPGS),尺寸为14.21±0.14nm,多聚度指数(PdI)为0.19±0.05,包封率为66.21±1.11%。使用平行人工膜通透性测定(PAMPA)和Caco-2细胞单层评估胶束对多酚通透性的影响。在这两种检测中,聚合物胶束改善了多酚的渗透,Pe和Papp值的增加证明了这一点。
    In the present study, polymeric micelles were developed to improve the intestinal permeability of an extract of Olea europaea L. leaf with a high content of total polyphenols (49% w/w), with 41% w/w corresponding to the oleuropein amount. A pre-formulation study was conducted to obtain a stable formulation with a high loading capacity for extract. The freeze-drying process was considered to improve the stability of the formulation during storage. Micelles were characterized in terms of physical and chemical properties, encapsulation efficiency, stability, and in vitro release. The optimized system consisted of 15 mg/mL of extract, 20 mg/mL of Pluronic L121, 20 mg/mL of Pluronic F68, and 10 mg/mL of D-α-tocopheryl polyethylene glycol succinate (TPGS), with dimensions of 14.21 ± 0.14 nm, a polydisersity index (PdI) of 0.19 ± 0.05 and an encapsulation efficiency of 66.21 ± 1.11%. The influence of the micelles on polyphenol permeability was evaluated using both Parallel Artificial Membrane Permeability Assay (PAMPA) and the Caco-2 cell monolayer. In both assays, the polymeric micelles improved the permeation of polyphenols, as demonstrated by the increase in Pe and Papp values.
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  • 文章类型: Journal Article
    Covid-19被宣布为世界大流行。最近的研究表明,Covid-19通过穿越血脑屏障和随之而来的认知障碍来损害中枢神经系统的活动。在这项研究中,我们利用Covid-19主蛋白酶(Mpro)作为生物学靶标,重新利用我们先前报道的针对阿尔茨海默病的多功能化合物。分子对接,空间取向,分子动力学模拟,MM-GBSA能量计算,用这些分子进行DFT研究。在所有的化合物中,F27,F44和F56表现出更高的结合能(-8.03,-8.65和-8.68kcal/mol,分别)在共晶配体O6K(-7.00kcal/mol)上。在MD模拟中,化合物F27、F44和F56可以在整个模拟过程中与Mpro靶标形成稳定的复合物。这些化合物是按照报道的方法合成的,并进行细胞毒性,并在PAMPA测定中评估它们穿过血脑屏障的能力,并通过DPPH测定进行抗氧化性能评价。化合物F27,F44和F56表现出与SiHA细胞系的细胞相容性,并且还表现出明显的抗氧化特性,IC50=45.80±0.27μM,44.42±0.30μM,和42.74±0.23μM。在PAMPA检测中,F27、F44和F56的渗透系数(Pe)值在可接受的范围内(Pe>4)。计算和初步体外研究的结果有力地证实了F27、F44和F56作为进一步优化与新冠肺炎相关的中枢神经系统并发症治疗的潜在线索。
    Covid-19 was declared a world pandemic. Recent studies demonstrated that Covid-19 impairs CNS activity by crossing the blood-brain barrier and ensuing cognitive impairment. In this study, we have utilized Covid-19 main protease (Mpro) as a biological target to repurpose our previously reported multifunctional compounds targeting Alzheimer\'s disease. Molecular docking, spatial orientation, molecular dynamics simulation, MM-GBSA energy calculation, and DFT studies were carried out with these molecules. Among all the compounds, F27, F44, and F56 exhibited higher binding energy (- 8.03, - 8.65, and - 8.68 kcal/mol, respectively) over the co-crystal ligand O6K (- 7.00 kcal/mol). In MD simulation, compounds F27, F44, and F56 could make a stable complex with Mpro target throughout the simulation. The compounds were synthesized following reported methods and subjected for cytotoxicity, and assessment of their capability to cross the blood-brain barrier in PAMPA assay, and antioxidant property evaluation through DPPH assay. The compounds F27, F44, and F56 exhibited cytocompatibility with the SiHA cell line and also displayed significant antioxidant properties with IC50 = 45.80 ± 0.27 μM, 44.42 ± 0.30 μM, and 42.74 ± 0.23 μM respectively. In the PAMPA assays, the permeability coefficient (Pe) value of F27, F44, and F56 lies in the acceptable range (Pe > 4). The results of the computational and preliminary in-vitro studies strongly corroborate the potential of F27, F44, and F56 as a lead for further optimization in treating the CNS complications associated with Covid-19.
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  • 文章类型: Journal Article
    Roth\'s explorations, the resulting collections many now allocated in La Plata, Zurich, Geneva and Copenhagen, and his significant contributions in geological-especially stratigraphic-and paleontological topics, are a paradigmatic case for the global history of paleontology and for the Swiss migration history in Latin America. His work included the discovery of a diverse megafauna from the Pampean region, of sites and strata in Patagonia of paleontological significance, and the recognition of a group of endemic ungulate mammals, Notoungulata. Roth\'s discovery of a human skeleton associated with a glyptodont carapace is one of the first reports of the coexistence of humans with the extinct fauna of the South American Quaternary. Roth became a renowned scholar at the Museo de La Plata, which was a leading scientific institution in the nation-making of Argentina, particularly in the expansion of the Patagonian frontier. He also kept strong ties with his native Switzerland, where late in his adult life he obtained some formal training and tried to attract other Swiss nationals to work in natural sciences in Argentina. His biography sheds light about the circumstances of his scientific collection and career in the interstices between amateur and professional science, modernity and imperialism at the turn of the twentieth century.
    UNASSIGNED: The online version contains supplementary material available at 10.1186/s13358-023-00282-6.
    Las exploraciones de Roth, las colecciones resultantes muchas ahora ubicadas en La Plata, Zúrich, Ginebra y Copenhague, y sus importantes aportes en temas geológicos -especialmente estratigráficos- y paleontológicos, son un caso paradigmático para la historia global de la paleontología y para la historia de la migración suiza en América Latina. Su trabajo exploratorio incluyó el descubrimiento de una megafauna diversa de la región pampeana, de sitios y estratos en la Patagonia de importancia paleontológica, y el reconocimiento de un grupo de mamíferos ungulados endémicos, Notoungulata. El descubrimiento de Roth de un esqueleto humano asociado a un caparazón de gliptodonte es uno de los primeros informes de la coexistencia del hombre y la fauna extinta del Cuaternario sudamericano. Roth se convirtió en un académico de renombre en el Museo de La Plata, que fue una institución científica líder en la formación de la nación argentina, particularmente en la expansión de la frontera patagónica. También mantuvo fuertes lazos con su Suiza natal, donde al final de su vida adulta obtuvo una formación formal y trató de atraer a otros ciudadanos suizos para trabajar en ciencias naturales en Argentina. Su biografía arroja luz sobre las circunstancias de su acervo científico y su trayectoria en los intersticios entre la ciencia amateur y la profesional, la modernidad y el imperialismo a principios del siglo XX.
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  • 文章类型: Journal Article
    四环二芳基庚类-卡宾酮三醇A(1)和B(2),giffoninX(3)和3,12,17-三羟基三环[12.3.1.12,6]nonadeca-1(18),2(19)、3,5,14,16-己烯-8,11-二酮(4)-从Carpinusbetulus(桦木科)中分离得到。作为储存温度(-15、5、22°C)和时间(12和23周)的函数评价分离的二芳基庚类化合物的化学稳定性。还研究了溶剂和pH(1.2、6.8、7.4)对这些二芳基庚酸的稳定性的影响。化合物2和4在所有研究温度下在水溶液和甲醇溶液中均显示出良好的稳定性。在所有三个研究的生物相关pH值下,只有2个是稳定的。1和3的降解产物是通过从母体化合物中消除水分子而形成的,如超高效液相色谱-高分辨率串联质谱(UHPLC-HR-MS)所证实。通过平行人工膜通透性测定(PAMPA)评估化合物穿过生物膜的通透性。化合物3在血脑屏障特异性PAMPA-BBB研究中具有-5.92±0.04的logPe值,表明它可以通过被动扩散穿过血脑屏障。研究了化合物对五种人类癌细胞系的体外抗增殖活性,证实1抑制A2058人转移性黑色素瘤细胞中的细胞增殖。
    Four cyclic diarylheptanoids-carpinontriols A (1) and B (2), giffonin X (3) and 3,12,17-trihydroxytricyclo [12.3.1.12,6]nonadeca-1(18),2(19),3,5,14,16-hexaene-8,11-dione (4)-were isolated from Carpinus betulus (Betulaceae). Chemical stability of the isolated diarylheptanoids was evaluated as a function of storage temperature (-15, 5, 22 °C) and time (12 and 23 weeks). The effect of the solvent and the pH (1.2, 6.8, 7.4) on the stability of these diarylheptanoids was also investigated. Compounds 2 and 4 showed good stability both in aqueous and methanolic solutions at all investigated temperatures. Only 2 was stable at all three studied biorelevant pH values. Degradation products of 1 and 3 were formed by the elimination of a water molecule from the parent compounds, as confirmed by ultrahigh-performance liquid chromatography-high-resolution tandem mass spectrometry (UHPLC-HR-MS). The permeability of the compounds across biological membranes was evaluated by the parallel artificial membrane permeability assay (PAMPA). Compound 3 possesses a logPe value of -5.92 ± 0.04 in the blood-brain barrier-specific PAMPA-BBB study, indicating that it may be able to cross the blood-brain barrier via passive diffusion. The in vitro antiproliferative activity of the compounds was investigated against five human cancer cell lines, confirming that 1 inhibits cell proliferation in A2058 human metastatic melanoma cells.
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