P3H1

  • 文章类型: Journal Article
    背景:由于发病和临床严重程度广泛,咨询成骨不全症(OI)妊娠具有挑战性,从围产期致死性到生命后期检测到的温和形式。
    方法:来自36个家庭的38个人通过产前超声检查和/或死后临床和影像学检查结果被诊断为OI。对过去20年中出现的26个与OI相关的基因进行了遗传分析,虽然一些基因是逐步检查的,在未检测到致病变异的组中检查了所有26个基因。
    结果:产前和产后观察结果一致显示,97%的人四肢短小,其次是89%的长骨弯曲。在32个评估案例中,所有患者均表现为颅骨低矿化。在29例(76%)中发现了骨折,其中18个涉及多个骨头。在27个家庭中发现了遗传关联,其中22个(81%)常染色体显性和5个(19%)常染色体隐性形式,揭示了六个基因(COL1A1,COL1A2,CREB3L1,P3H1,FKBP10和IFITM5)中的25个变异,包括九部小说。死后放射学检查显示CREBL3和P3H1相关OI的家族内表达存在差异。
    结论:产前诊断区分OI及其亚型依赖于诸如家族史等因素,定时,超声,遗传和死后评估。
    BACKGROUND: Counseling osteogenesis imperfecta (OI) pregnancies is challenging due to the wide range of onsets and clinical severities, from perinatal lethality to milder forms detected later in life.
    METHODS: Thirty-eight individuals from 36 families were diagnosed with OI through prenatal ultrasonography and/or postmortem clinical and radiographic findings. Genetic analysis was conducted on 26 genes associated with OI in these subjects that emerged over the past 20 years; while some genes were examined progressively, all 26 genes were examined in the group where no pathogenic variations were detected.
    RESULTS: Prenatal and postnatal observations both consistently showed short limbs in 97%, followed by bowing of the long bones in 89%. Among 32 evaluated cases, all exhibited cranial hypomineralization. Fractures were found in 29 (76%) cases, with multiple bones involved in 18 of them. Genetic associations were disclosed in 27 families with 22 (81%) autosomal dominant and five (19%) autosomal recessive forms, revealing 25 variants in six genes (COL1A1, COL1A2, CREB3L1, P3H1, FKBP10, and IFITM5), including nine novels. Postmortem radiological examination showed variability in intrafamily expression of CREBL3- and P3H1-related OI.
    CONCLUSIONS: Prenatal diagnosis for distinguishing OI and its subtypes relies on factors such as family history, timing, ultrasound, genetics, and postmortem evaluation.
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  • 文章类型: Journal Article
    3-羟化酶1(P3H1)与癌症发展有关,但尚未对P3H1进行泛癌症分析。在这项研究中,第一次,与P3H1相关的方面,如mRNA表达,任何突变,启动子甲基化,和预后意义,P3H1与临床病理参数的关系,药物敏感性,和免疫细胞浸润通过搜索包括癌症基因组图谱(TCGA),基因型-组织表达(GTEx),cBioPortal,和使用生物信息学工具的肿瘤免疫评估资源(TIMER2.0)。结果表明,与正常组织相比,P3H1在大多数肿瘤中的显著差异表达。与临床预后密切相关。泛癌Cox回归分析显示,在低级别脑胶质瘤患者中,高P3H1表达与低总生存率显著相关。肾透明细胞癌,肾上腺皮质癌,肝细胞癌,间皮瘤,肉瘤,葡萄膜黑色素瘤,膀胱尿路上皮癌,肾乳头状细胞癌,肾发色,胸腺瘤,和甲状腺癌。P3H1基因甲基化与其表达呈负相关。P3H1与浸润细胞显著相关,免疫相关基因,肿瘤突变负荷,微卫星不稳定,和失配修复。最后,发现P3H1表达与对9种药物的敏感性之间存在显着相关性。因此,P3H1表达增强与多种肿瘤的不良预后相关,这可能是由于其在肿瘤免疫调节和肿瘤微环境中的作用。这种泛癌分析为了解P3H1在不同癌症肿瘤发生中的功能提供了见解,并为后续进一步深入研究提供了理论基础。
    Prolyl 3-hydroxylase 1 (P3H1) has been implicated in cancer development, but no pan-cancer analysis has been conducted on P3H1. In this study, for the first time, aspects associated with P3H1, such as the mRNA expression, any mutation, promoter methylation, and prognostic significance, the relationship between P3H1 and clinicopathological parameters, drug sensitivity, and immune cell infiltration were investigated by searching several databases including The Cancer Genome Atlas (TCGA), Genotype-Tissue Expression (GTEx), cBioPortal, and The Tumor Immune Evaluation Resource (TIMER2.0) using bioinformatics tools. The findings indicate significant differential expression of P3H1 in most tumors when compared to normal tissues, with a strong association with clinical prognosis. A pan-cancer Cox regression analysis revealed that high P3H1 expression is significantly associated with low overall survival in patients with brain lower grade glioma, kidney clear cell carcinoma, adrenocortical cancer, liver hepatocellular carcinoma, mesothelioma, sarcoma, uveal melanoma, bladder urothelial carcinoma, kidney papillary cell carcinoma, kidney chromophobe, thymoma, and thyroid carcinoma. A negative correlation was observed between P3H1 DNA methylation and its expression. P3H1 is significantly associated with infiltrating cells, immune-related genes, tumor mutation burden, microsatellite instability, and mismatch repair. Finally, A significant correlation was found between P3H1 expression and sensitivity to nine drugs. Thus, enhanced P3H1 expression is associated with poor prognosis in a variety of tumors, which may be due to its role in tumor immune regulation and tumor microenvironment. This pan-cancer analysis provides insight into the function of P3H1 in tumorigenesis of different cancers and provides a theoretical basis for further in-depth studies to follow.
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  • 文章类型: Journal Article
    成骨不全症(OI)是一种骨脆性综合征,临床表现差异很大。同样可变的是分子病因学;隐性形式由大约20种不同的基因引起,其中许多与I型胶原蛋白的生物合成直接相关。已知在3-羟化酶1(P3H1)中的双等位基因变体通过影响3-羟化-软骨相关蛋白-肽基-丙氨酰顺反异构酶B(P3H1-CRTAP-CyPB)复合物的能力而导致严重的OI,它作用于I型胶原蛋白α1(COL1A1)和Pro707I型胶原蛋白α2(COL1A2)链的Pro986残基。对越南146名患者的OI队列的调查确定了14个具有P3H1变异的家庭。发现c.1170+5G>C变体非常普遍(12/14),占越南OI队列的10.3%。在该群体中还鉴定了新的P3H1变体。有趣的是,c.1170+5G>C变体在患有严重临床Sillence2型和3型以及较温和的1型和4型的家庭中发现。这是首次在P3H1变异的患者中报道OI类型1,扩大了临床范围。具有纯合c.1170+5G>C变体的患者共享严重的逐渐变形的OI3型:弓形长骨,胸腔畸形,长指骨和手,蓝色巩膜,短头畸形,和早期宫内骨折.尽管尚不清楚c.1170+5G>C变体是否构成越南人口的创始人突变,其患病率使其对Kinh族患者OI的分子诊断具有价值。我们的研究提供了对越南人群中P3H1相关OI的临床和遗传变异的见解。
    Osteogenesis imperfecta (OI) is a syndromic disorder of bone fragility with high variation in its clinical presentation. Equally variable is molecular aetiology; recessive forms are caused by approximately 20 different genes, many of which are directly implicated in collagen type I biosynthesis. Biallelic variants in prolyl 3-hydroxylase 1 (P3H1) are known to cause severe OI by affecting the competence of the prolyl 3-hydroxylation—cartilage associated protein—peptidyl-prolyl cis-trans isomerase B (P3H1-CRTAP-CyPB) complex, which acts on the Pro986 residue of collagen type I α 1 (COL1A1) and Pro707 collagen type I α 2 (COL1A2) chains. The investigation of an OI cohort of 146 patients in Vietnam identified 14 families with P3H1 variants. The c.1170+5G>C variant was found to be very prevalent (12/14) and accounted for 10.3% of the Vietnamese OI cohort. New P3H1 variants were also identified in this population. Interestingly, the c.1170+5G>C variants were found in families with the severe clinical Sillence types 2 and 3 but also the milder types 1 and 4. This is the first time that OI type 1 is reported in patients with P3H1 variants expanding the clinical spectrum. Patients with a homozygous c.1170+5G>C variant shared severe progressively deforming OI type 3: bowed long bones, deformities of ribcage, long phalanges and hands, bluish sclera, brachycephaly, and early intrauterine fractures. Although it remains unclear if the c.1170+5G>C variant constitutes a founder mutation in the Vietnamese population, its prevalence makes it valuable for the molecular diagnosis of OI in patients of the Kinh ethnicity. Our study provides insight into the clinical and genetic variation of P3H1-related OI in the Vietnamese population.
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  • 文章类型: Case Reports
    Osteogenesis imperfecta (OI) is a genetic disorder that causes skeletal fragility, multiple fractures and several extraskeletal disorders. Most cases of OI are caused by mutations in COL1A1/A2. Osteogenesis imperfecta type VIII typically causes a severe and fatal phenotype that presents at birth with severe osteopenia, congenital fractures and other clinical manifestations.
    We describe the cases of an 11-year-old female and a 9-year-old male with homozygous truncating mutations in P3H1. Both cases were born with intrauterine fractures and suffered multiple fractures shortly after birth, requiring multiple operations to correct both fractures and severe scoliosis. The patients have been treated with pamidronate since the age of 2.
    Whole exome sequencing (WES) was performed by Gene by Gene using Twist Bioscience technology. Initially, ~36.5 Mb of consensus coding sequences (targeting >98% of RefSeq and Gencode v. 28 regions obtained from the human genome) was replicated from fragmented genomic DNA using the Twist Human Core Exome Plus kit. The subsequent library was sequenced on the Illumina Novaseq Next Generation Sequencing platform to achieve at least ×20 reading depth for >98% of the targeted bases. Variant annotations and filtering was performed using Ingenuity Variant Analysis software.
    We identified a homozygous mutation in the 3rd exon of P3H1 (c.628C>T/p.Arg210 Ter). Our cases broaden the phenotypic spectrum of OI type VIII as, to the best of our knowledge, these are the first postnatal cases with P3H1 (c.628C>T/p.Arg210 Ter) mutations published in the literature.
    We present the first recorded postnatal cases from unrelated families of OI type VIII, broadening our understanding of the severe, but nonfatal spectrum of clinical phenotype of this recessive form of OI.
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  • 文章类型: Journal Article
    背景:成骨不全症(OI),是一种可遗传的,异质性结缔组织疾病,以脆弱的骨头为特征。关于基因型-表型相关性和双膦酸盐治疗该疾病的效率存在矛盾的结果。目的:我们旨在评估临床,遗传特征,以及OI儿童和青少年的长期随访结果。材料和方法:采用人口学、临床,和从病人的医疗记录中获得的基因数据。结果:29例患者(62%为男性,中位年龄;3.6岁),来自26个家庭的OI诊断被纳入研究。在COL1A1,COL1A2和P3H1基因的16名患者中描述了13种不同的变体(9种是新颖的)。我们具有纯合P3H1变体的兄弟姐妹具有严重的子宫内和新生儿骨折表型。22例患者接受双膦酸盐治疗(其中17例接受帕米膦酸盐治疗,五个阿仑膦酸钠),中位持续时间为3.0(1.6-4.8)年。11例患者(50%)在治疗后发生骨折。COL1A1的单倍功能不全变异导致较温和的骨骼表型,与结构变异相比,骨折计数较少,治疗效果更好。与初始诊断时的人体测量相比,在最后一次临床随访中,身高Z评分较低(p=0.009).结论:在COL1A1或COL1A2变异的土耳其OI患者中,我们没有发现明显的基因型-表型相关性。帕米膦酸盐治疗可有效减少骨折计数,没有任何长期的不良影响。
    Background: Osteogenesis imperfecta (OI), is a heritable, heterogeneous connective tissue disorder, characterized by fragile bones. There are conflicting results about genotype-phenotype correlations and efficiency of bisphosphonate treatment in this disorder.Aim: We aimed to evaluate the clinical, genetic characteristics, and long-term follow-up results of children and adolescents with OI.Materials and methods: A two-center retrospective study was conducted using demographic, clinical, and genetic data obtained from the medical records of the patients.Results: Twenty-nine patients (62% male, median age; 3.6 years) with OI diagnosis from 26 families were included in the study. Thirteen different variants (nine were novel) were described in 16 patients in COL1A1, COL1A2, and P3H1 genes. Our siblings with homozygous P3H1 variants had a severe phenotype with intrauterine and neonatal fractures. Twenty-two patients were treated with bisphosphonates (17 of them with pamidronate, five with alendronate) with a median duration of 3.0 (1.6-4.8) years. Eleven patients (50%) suffered from fractures after the treatment. Haploinsufficiency variants in COL1A1 caused a milder skeletal phenotype with less fracture count and better treatment outcomes than structural variants. When compared with the anthropometric measurements at the initial diagnosis time, height Z-scores were lower on the last clinical follow-up (p = 0.009).Conclusions: We could not find an obvious genotype-phenotype correlation in Turkish OI patients with COL1A1 or COL1A2 variants. Treatment with pamidronate was effective in reducing fracture counts, without any long-term adverse effects.
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  • 文章类型: Case Reports
    Osteogenesis imperfecta (OI) type VIII (OMIM: 610915) is a rare autosomal recessive disorder characterized by white sclerae, severe growth deficiency, and bone fragility. This condition results from pathogenic variants of P3H1, a gene that codes for P3H1, an important protein involved in the prolyl-3-hydroxylation complex required for collagen type I folding. Here, we described a woman with OI type VIII due to a homozygous mutation of c.1914+1G>C (NM_001243246.1) in P3H1 and retinal detachment. We compared our case to five severe OI and retinal detachment cases reported in the literature. The only case previously reported with a molecular diagnosis had a similar mutation in P3H1 c.1914+1G>A and a giant retinal detachment. We suggest that individuals with OI type VIII should be submitted to careful fundoscopic examination.
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  • 文章类型: Case Reports
    Osteogenesis imperfecta (OI) is a highly clinically and genetically heterogeneous group of disorders. It is difficult to identify severe OI in the perinatal period. Here, a Chinese woman with a suspected history of fetal OI was referred to our institution at 19weeks of gestation, due to ultrasound inspection during antenatal screening, which revealed bulbous metaphyses, short humeri, and short thick bent femora in the fetus. Using targeted exome sequencing of 248 genes known to be involved in skeletal system diseases, we identified novel compound heterozygous mutation in the P3H1 gene in the fetus with OI type VIII: c.105_120del (p.D36Rfs*16) and c.2164C>T (p.Q722*). These two mutations were inherited from the father and mother, respectively. The mRNA level of P3H1 wasn\'t changed suggested that mRNA with this mutation escaped from nonsense-mediated RNA decay. Besides, the level of P3H1 was absence while the CRTAP was mildly decreased. In conclusion, our findings imply this novel compound heterozygous mutation as the molecular pathogenetic in a Chinese fetus with OI type VIII, and demonstrate that targeted next-generation sequencing (NGS) is an accurate, rapid, and cost-effective method in the genetic diagnosis of fetal skeletal dysplasia with genetic and clinical heterogeneity, especially for autosomal recessive skeletal disorders.
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