Oral microbiota

口腔微生物群
  • 文章类型: Journal Article
    Periodontitis is a common chronic inflammatory disease, affecting approximately 19% of the global adult population. A relationship between periodontal disease and Alzheimer disease has long been recognized, and recent evidence has been uncovered to link these 2 diseases mechanistically. Periodontitis is caused by dysbiosis in the subgingival plaque microbiome, with a pronounced shift in the oral microbiota from one consisting primarily of Gram-positive aerobic bacteria to one predominated by Gram-negative anaerobes, such as Porphyromonas gingivalis. A common phenomenon shared by all bacteria is the release of membrane vesicles to facilitate biomolecule delivery across long distances. In particular, the vesicles released by P gingivalis and other oral pathogens have been found to transport bacterial components across the blood-brain barrier, initiating the physiologic changes involved in Alzheimer disease. In this review, we summarize recent data that support the relationship between vesicles secreted by periodontal pathogens to Alzheimer disease pathology.
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  • 文章类型: Journal Article
    人类微生物群代表了人体内微生物的群落和多样性,其中包括大约100万亿个微生物。它们存在于人体胃肠道和各种其他器官中,现在被认为是虚拟身体器官。它主要由细菌代表,但也包括病毒,真菌,和原生动物.尽管肠道微生物群有可遗传的成分,与饮食相关的环境因素,毒品,和人体测量学确定微生物群的组成。除了胃肠道,人体也在皮肤中含有微生物群落,口腔和鼻腔,和生殖道。本综述证明了肠道微生物群的作用及其在食品加工中的参与,毒品,和免疫反应。讨论的重点是人类微生物群在发展几种疾病中的意义。如胃肠道感染,代谢紊乱,恶性肿瘤,等。,通过共生关系。微生物群体可以根据个体的病理生理状况而变化,因此可以用作治疗和临床参与者。Further,我们需要更彻底的研究,以建立微生物和人类病理生理之间的相关性,并提出它们作为潜在的治疗靶点。
    The human microbiota represents the community and diverse population of microbes within the human body, which comprises approximately 100 trillion micro-organisms. They exist in the human gastrointestinal tract and various other organs and are now considered virtual body organs. It is mainly represented by bacteria but also includes viruses, fungi, and protozoa. Although there is a heritable component to the gut microbiota, environmental factors related to diet, drugs, and anthropometry determine the composition of the microbiota. Besides the gastrointestinal tract, the human body also harbours microbial communities in the skin, oral and nasal cavities, and reproductive tract. The current review demonstrates the role of gut microbiota and its involvement in processing food, drugs, and immune responses. The discussion focuses on the implications of human microbiota in developing several diseases, such as gastrointestinal infections, metabolic disorders, malignancies, etc., through symbiotic relationships. The microbial population may vary depending on the pathophysiological condition of an individual and thus may be exploited as a therapeutic and clinical player. Further, we need a more thorough investigation to establish the correlation between microbes and pathophysiology in humans and propose them as potential therapeutic targets.
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  • 文章类型: Journal Article
    口腔可能在幽门螺杆菌的传播和定植中起作用。幽门螺杆菌的传播途径尚未完全了解。这种病原体的流行率在全球范围内各不相同,影响了世界上一半的人口,主要在发展中国家。这里,我们回顾了幽门螺杆菌在口腔中的患病率,促进其在口腔微生物组中定植和动态的特征,菌株间毒力的异质性和多样性,以及口腔样本中幽门螺杆菌检测的非侵入性技术。幽门螺杆菌在口腔中的患病率差异很大,受人口特征的影响,在口腔中收集样本的区域,以及检测方法的变化。尽管口腔样本中幽门螺杆菌的存在与胃部感染之间没有直接关联,胃幽门螺杆菌阳性病例通常在口腔中表现出更高的细菌患病率,这表明胃可能不是幽门螺杆菌的唯一储库。在口腔中,幽门螺杆菌可引起口腔生态系统的微生物组失衡和重塑。通过非侵入性方法检测口腔中的幽门螺杆菌可以提供更容易获得的诊断工具,并有助于防止传播和胃重新定殖。对口腔中这种细菌的进一步研究将为幽门螺杆菌感染的治疗提供见解,可能开发新的临床方法。
    The oral cavity may play a role as a reservoir and in the transmission and colonization of Helicobacter pylori. The route of transmission for H. pylori is not fully understood. The prevalence of this pathogen varies globally, affecting half of the world\'s population, predominantly in developing countries. Here, we review the prevalence of H. pylori in the oral cavity, the characteristics that facilitate its colonization and dynamics in the oral microbiome, the heterogeneity and diversity of virulence of among strains, and noninvasive techniques for H. pylori detection in oral samples. The prevalence of H. pylori in the oral cavity varies greatly, being influenced by the characteristics of the population, regions where samples are collected in the oral cavity, and variations in detection methods. Although there is no direct association between the presence of H. pylori in oral samples and stomach infection, positive cases for gastric H. pylori frequently exhibit a higher prevalence of the bacterium in the oral cavity, suggesting that the stomach may not be the sole reservoir of H. pylori. In the oral cavity, H. pylori can cause microbiome imbalance and remodeling of the oral ecosystem. Detection of H. pylori in the oral cavity by a noninvasive method may provide a more accessible diagnostic tool as well as help prevent transmission and gastric re-colonization. Further research into this bacterium in the oral cavity will offer insights into the treatment of H. pylori infection, potentially developing new clinical approaches.
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  • 文章类型: Journal Article
    本综述旨在探讨口腔微生物群的多样性及其影响因素,以及口腔微生物群与口腔健康的关系以及生态失调和口腔疾病的可能影响。口腔有大量的微生物负担,与人体内的其他器官相比,这是特别值得注意的。在通常情况下,微生物群处于平衡状态;然而,当这种平衡被打破时,出现了许多并发症。龋齿,口腔中普遍存在的问题,主要是由细菌的定植和活动引起的,尤其是链球菌。此外,这种环境还容纳了与牙龈发病有关的其他致病菌,根尖周,和牙周疾病,以及口腔癌。已经采取了各种策略来预防,control,并治疗这些疾病。最近,利用微生物群的技术,比如益生菌,微生物移植,以及口腔病原体的替代,吸引了眼球。这项广泛的研究旨在提供有关口腔健康和疾病的口腔微生物群及其代谢产物的一般观点。以及微生物群的恢复力,以及用于预防的技术,control,和治疗这一特定领域的疾病。
    The review aimed to investigate the diversity of oral microbiota and its influencing factors, as well as the association of oral microbiota with oral health and the possible effects of dysbiosis and oral disorder. The oral cavity harbors a substantial microbial burden, which is particularly notable compared to other organs within the human body. In usual situations, the microbiota exists in a state of equilibrium; however, when this balance is disturbed, a multitude of complications arise. Dental caries, a prevalent issue in the oral cavity, is primarily caused by the colonization and activity of bacteria, particularly streptococci. Furthermore, this environment also houses other pathogenic bacteria that are associated with the onset of gingival, periapical, and periodontal diseases, as well as oral cancer. Various strategies have been employed to prevent, control, and treat these disorders. Recently, techniques utilizing microbiota, like probiotics, microbiota transplantation, and the replacement of oral pathogens, have caught the eye. This extensive examination seeks to offer a general view of the oral microbiota and their metabolites concerning oral health and disease, and also the resilience of the microbiota, and the techniques used for the prevention, control, and treatment of disorders in this specific area.
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  • 文章类型: Journal Article
    特应性皮炎(AD)是皮肤科临床常见的复发性特应性疾病,多见于儿童和青少年。近年来,已发现AD与微生物群落密切相关。
    为了探索来自不同部位的定植细菌与AD之间的协同作用,我们比较分析了皮肤,口服,通过16SrRNA基因测序,对患有AD的儿童(50例)和健康儿童(50例)的肠道微生物群进行分析。还从两组中随机选择20个样品进行代谢和大基因组测序。
    我们的测序研究结果表明口腔中的微生物群多样性减少,皮肤,与AD患儿肠道有关(P<0.05)。代谢组学分析表明,5-羟色胺能突触,花生四烯酸代谢,类固醇生物合成在口服的所有三个位点都下调,皮肤,与AD患儿肠道有关(P<0.05)。宏基因组测序分析表明,三个位点菌群的KEGG功能通路参与了氧化磷酸化,泛素介导的蛋白水解,mRNA监测途径,真核生物的核糖体生物发生,蛋白酶体,基础转录因子,过氧化物酶体,MAPK信号通路,线粒体自噬,脂肪酸伸长,依此类推(P<0.05)。
    组合的微生物,新陈代谢,宏观遗传学分析确定了关键细菌,代谢物,和可能与AD发展相关的致病途径。我们对AD患者不同部位的微生物群的作用提供了更全面和深入的了解,指出了未来诊断的新方向,治疗和预后。
    UNASSIGNED: Atopic dermatitis (AD) is a common clinical recurrent atopic disease in dermatology, most seen in children and adolescents. In recent years, AD has been found to be closely associated with microbial communities.
    UNASSIGNED: To explore the synergistic effects between colonizing bacteria from different sites and AD, we comparatively analyzed the skin, oral, and gut microbiota of children with AD (50 individuals) and healthy children (50 individuals) by 16S rRNA gene sequencing. Twenty samples were also randomly selected from both groups for metabolic and macrogenomic sequencing.
    UNASSIGNED: The results of our sequencing study showed reduced microbiota diversity in the oral, skin, and gut of children with AD (P < 0.05). Metabolomics analysis showed that serotonergic synapse, arachidonic acid metabolism, and steroid biosynthesis were downregulated at all three loci in the oral, skin, and gut of children with AD (P < 0.05). Macrogenomic sequencing analysis showed that KEGG functional pathways of the three site flora were involved in oxidative phosphorylation, ubiquitin-mediated proteolysis, mRNA surveillance pathway, ribosome biogenesis in eukaryotes, proteasome, basal transcription factors, peroxisome, MAPK signaling pathway, mitophagy, fatty acid elongation, and so on (P < 0.05).
    UNASSIGNED: The combined microbial, metabolic, and macrogenetic analyses identified key bacteria, metabolites, and pathogenic pathways that may be associated with AD development. We provides a more comprehensive and in-depth understanding of the role of the microbiota at different sites in AD patients, pointing to new directions for future diagnosis, treatment and prognosis.
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  • 文章类型: Journal Article
    益生菌在调节口腔微生物群和改善人类和啮齿动物的口腔健康方面表现出有效性。然而,其对猫口腔微生物群的影响和应用仍未得到充分探索。12只健康猫被随机分配到对照组(CON)和复合益生菌组(CPG)进行42天的试验。CPG饮食包括额外补充动物双歧杆菌亚种。乳酸HN019,嗜酸乳杆菌NCFM,和干酪乳杆菌LC-11,各自为约1×1010CFU/kg。在第0天和第42天,从牙龈收集微生物样品,齿面,和所有猫的舌头进行16SrRNA基因测序。拟杆菌,Firmicutes,和变形杆菌是所有口腔部位的优势门。CPG处理丰富了七个属,比如莫拉氏菌,放线菌,和腓特烈克尼亚在牙龈。同时,牙齿表面富含Bergeyella和链球菌,而Bergeyella,黄杆菌,Luteimonas在舌头上得到了丰富。此外,复合益生菌有效抑制了八个属,比如拟杆菌,Desulfovibrio,和CPG猫牙龈中的Filifactor,以及Helcococcus,Lentiflomicum,和牙齿表面的弯曲杆菌,和卟啉虫,密螺旋体,舌头上还有Fusibacter.这些发现表明,本研究中使用的复合益生菌通过支持有益或共生细菌和抑制口腔病原体来调节猫科动物口腔微生物群,证明了改善猫口腔健康的潜力。
    Probiotics demonstrated effectiveness in modulating oral microbiota and improving oral health in humans and rodents. However, its effects and applications on the oral microbiota of cats remain underexplored. Twelve healthy cats were randomly assigned to a control group (CON) and a composite probiotic group (CPG) for a 42-day trial. The CPG diet included additional supplementation of Bifidobacterium animalis subsp. lactis HN019, Lactobacillus acidophilus NCFM, and Lactobacillus casei LC-11, each at approximately 1 × 1010 CFU/kg. On days 0 and 42, microbial samples were collected from the gingiva, tooth surfaces, and tongue of all cats for 16S rRNA gene sequencing. Bacteroidetes, Firmicutes, and Proteobacteria were the dominant phyla across all oral sites. The CPG treatment enriched seven genera, such as Moraxella, Actinomyces, and Frederiksenia in the gingiva. Meanwhile, Bergeyella and Streptococcus were enriched on the tooth surfaces, while Bergeyella, Flavobacterium, and Luteimonas were enriched on the tongue. Furthermore, the composite probiotic effectively suppressed eight genera, such as Bacteroides, Desulfovibrio, and Filifactor in the gingiva of CPG cats, as well as Helcococcus, Lentimicrobium, and Campylobacter on tooth surfaces, and Porphyromonas, Treponema, and Fusibacter on the tongue. These findings suggest that the composite probiotic used in this study modulates the feline oral microbiota by supporting beneficial or commensal bacteria and inhibiting oral pathogens, demonstrating potential to improve oral health in cats.
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  • 文章类型: Journal Article
    背景:口腔微生物群包含与宿主共同进化形成的多微生物群落,有助于稳态和调节免疫功能。然而,口腔细菌群落的菌群失调与从感染到口腔癌的许多临床症状相关。种植体周围疾病是影响牙种植体周围软组织和硬组织的生物膜相关炎症。生物膜群落的表征和鉴定对于理解此类疾病的病理生理学至关重要。因此,采样方法应代表生物膜群落。需要通过下一代测序了解不同采样策略对生物膜表征的影响。
    方法:为了为种植体周围生物膜选择合适的微生物组采样程序,下一代测序用于表征通过三种不同采样策略获得的细菌群落来自跨上皮基牙(TACF)和跨上皮基牙(TA)的沟液。
    结果:在不同的采样程序之间,在OTU和属水平上都检测到多个α多样性指数的显着差异。在样本收集策略之间检测到差异丰富的分类单元,包括种植体周围健康和疾病相关分类群。在社区水平上,TACF和TA之间以及TA和ToCF之间也存在显着差异。此外,识别了差分网络属性和关联模式。
    结论:样本收集策略的选择可以显着影响群落的组成和结构。
    背景:该研究是一项随机临床试验的一部分,该试验旨在评估跨上皮基牙表面对生物膜形成的影响。该试验在试验注册ClinicalTrials.gov上注册,编号为NCT03554876。
    BACKGROUND: Oral microbiota comprises polymicrobial communities shaped by mutualistic coevolution with the host, contributing to homeostasis and regulating immune function. Nevertheless, dysbiosis of oral bacterial communities is associated with a number of clinical symptoms that ranges from infections to oral cancer. Peri-implant diseases are biofilm-associated inflammatory conditions affecting the soft and hard tissues around dental implants. Characterization and identification of the biofilm community are essential for the understanding of the pathophysiology of such diseases. For that sampling methods should be representative of the biofilm communities Therefore, there is a need to know the effect of different sampling strategies on the biofilm characterization by next generation sequencing.
    METHODS: With the aim of selecting an appropriate microbiome sampling procedure for periimplant biofilms, next generation sequencing was used for characterizing the bacterial communities obtained by three different sampling strategies two months after transepithelial abutment placement: adjacent periodontal crevicular fluid (ToCF), crevicular fluid from transepithelial abutment (TACF) and transepithelial abutment (TA).
    RESULTS: Significant differences in multiple alpha diversity indices were detected at both the OTU and the genus level between different sampling procedures. Differentially abundant taxa were detected between sample collection strategies, including peri-implant health and disease related taxa. At the community level significant differences were also detected between TACF and TA and also between TA and ToCF. Moreover, differential network properties and association patterns were identified.
    CONCLUSIONS: The selection of sample collection strategy can significantly affect the community composition and structure.
    BACKGROUND: This research is part of a randomized clinical trial that was designed to assess the effect of transepithelial abutment surface on the biofilm formation. The trial was registered at Trial Registration ClinicalTrials.gov under the number NCT03554876.
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  • 文章类型: Journal Article
    背景:牙周炎是全球第六大常见疾病。口腔微生物组组成及其与牙周病(PD)的关系已被大量探索;然而,有限的研究探索了PD患者口腔和牙刷的微生物特征。因此,这项研究旨在确定高海拔人群的口腔和牙刷微生物组成,假设它们与牙周健康的相关性与低海拔地区的不同,可能表明环境因素之间的联系,微生物定植模式,和牙周健康在不同的地理环境。
    方法:在本研究中,我们招募了35名来自西藏拉萨地区的健康个体,包括21名健康个体和14名诊断为PD的个体,中国。从每个参与者收集唾液和牙刷样品,以使用16SrRNA基因特异性V3-V4区域测序评估牙刷使用和口腔微生物组与PD之间的关联。评估口腔和牙刷的微生物组组成和多样性及其与PD的可能联系。
    结果:在PD组和PD牙刷之间(p=0.00021)以及在PD组和健康牙刷之间(p=0.00041)观察到显著更高的Alpha多样性(Shannon指数)。主要物种是变形杆菌,拟杆菌,Firmicutes,放线菌,和镰状细菌,假单胞菌属,Veillonella,奈瑟菌,不动杆菌,和嗜血杆菌.此外,PICRUST2分析揭示了44条区分疾病和健康群体的重要途径,以及29条途径,显示出各自牙刷微生物谱之间的显着差异。高海拔人群中独特的口腔和牙刷微生物组成表明了对高海拔环境挑战的潜在适应。
    结论:这项研究强调了量身定制的牙科护理策略的重要性,考虑海拔高度和种族因素,有效管理这些社区的牙周健康。有必要进行进一步的研究,以调查特定的微生物机制,并制定有针对性的干预措施,以优化不同海拔地区人群的口腔健康。
    BACKGROUND: Periodontitis is the sixth-most common disease worldwide. The oral microbiome composition and its association with Periodontal disease (PD) have been largely explored; however, limited studies have explored the microbial profiles of both oral and toothbrushes in patients with PD. Thus, this study aimed to ascertain the oral and toothbrushes microbial composition in high-altitude populations, hypothesizing that their correlation with periodontal health would differ from those at lower altitudes, potentially indicating links between environmental factors, microbial colonization patterns, and periodontal health in distinct geographic contexts.
    METHODS: In the present study, we enrolled 35 individuals including 21 healthy and 14 diagnosed with PD from the Lhasa region of Tibet, China. Saliva and toothbrush samples were collected from each participant to assess the association between toothbrush usage and oral microbiome with PD using 16 S rRNA gene-specific V3-V4 regions sequencing. To assess the oral and toothbrush microbiome composition and diversity and its possible link to PD.
    RESULTS: Significantly higher Alpha diversity (Shannon index) was observed between the PD group and PD toothbrushes (p = 0.00021) and between the PD group and Healthy toothbrushes (p = 0.00041). The predominant species were Proteobacteria, Bacteroidota, Firmicutes, Actinobacteria, and Fusobacteria, with genera Pseudomonas, Veillonella, Neisseria, Acinetobacter, and Haemophilus. In addition, PICRUST2 analysis unveiled 44 significant pathways differentiating the disease and healthy groups, along with 29 pathways showing significant differences between their respective toothbrush microbial profiles. The distinct oral and toothbrush microbial composition among high-altitude populations suggests potential adaptations to the challenges of high-altitude environments.
    CONCLUSIONS: This study emphasizes the importance of tailored dental care strategies, accounting for altitude and racial factors, to effectively manage periodontal health in these communities. Further research is warranted to investigate the specific microbial mechanisms and develop targeted interventions for optimizing oral health in populations across varying altitudes.
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  • 文章类型: Journal Article
    胃癌是世界范围内最常见的恶性肿瘤之一,死亡率很高。然而,胃癌的早期筛查和诊断测试是有限的和侵入性的。某些口腔微生物在胃癌中过表达,但是不同研究之间存在异质性。值得注意的是,每个口腔生态位都有特定的微生物。其中,舌苔,唾液,牙菌斑是口腔中重要而独特的生态位。不同口腔生态位中的定殖环境可能是异质性的来源。在本文中,我们系统地讨论了口腔微生物群和胃癌领域的最新发展,并阐明了舌苔口腔生态位中微生物的富集,唾液,胃癌患者的牙菌斑。口腔微生物群诱导胃癌的各种潜在机制(过度炎症反应的激活;促进增殖,迁移,入侵,和转移;和致癌物的分泌,导致胃微生物群落失衡)的探索。在本文中,我们还重点介绍了针对口腔微生物群的急救药在胃癌中的应用,并提出了与口腔微生物群与胃癌关系相关的未来研究方向。
    Gastric cancer is one of the most common malignant tumors worldwide and has a high mortality rate. However, tests for the early screening and diagnosis of gastric cancer are limited and invasive. Certain oral microorganisms are over-expressed in gastric cancer, but there is heterogeneity among different studies. Notably, each oral ecological niche harbors specific microorganisms. Among them, tongue coating, saliva, and dental plaque are important and unique ecological niches in the oral cavity. The colonization environment in different oral niches may be a source of heterogeneity. In this paper, we systematically discuss the latest developments in the field of the oral microbiota and gastric cancer and elucidate the enrichment of microorganisms in the oral ecological niches of the tongue coatings, saliva, and dental plaque in gastric cancer patients. The various potential mechanisms by which the oral microbiota induces gastric cancer (activation of an excessive inflammatory response; promotion of proliferation, migration, invasion, and metastasis; and secretion of carcinogens, leading to imbalance in gastric microbial communities) are explored. In this paper, we also highlight the applications of the rapeutics targeting the oral microbiota in gastric cancer and suggests future research directions related to the relationship between the oral microbiota and gastric cancer.
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  • 文章类型: Journal Article
    背景:许多人在SARS-CoV-2感染后经历长期COVID。由于微生物群可以影响健康,它可能会随着COVID-19而改变。这项研究调查了患有和不患有长期COVID的COVID-19患者口腔微生物群的差异。
    方法:基于前瞻性随访调查,这项巢式病例对照研究评估了患有和不患有长期COVID(症状组和无症状组)的个体口腔微生物群的差异,通过16SrRNA测序对舌苔样品进行评估。利用机器学习建立了基于特定差异微生物群落的预测模型。
    结果:纳入了108名患者(n=54名症状组)。症状组的Alpha多样性指数较高(observed_otus,Chao1,Shannon,和辛普森指数),微生物组成差异(β多样性),和微生物菌群失调,病原菌的多样性和相对丰度增加。标记细菌(c_弯曲杆菌,o__Coriobacteriales,o__Pseudomonadales,通过线性判别分析效应大小和受试者工作特征曲线(AUC0.821),弯曲杆菌)与长COVID相关。
    结论:有和没有长COVID的COVID-19患者口腔微生物群存在明显差异。口腔微生物群的变化可能表明长期COVID。
    BACKGROUND: Many individuals experience long COVID after SARS-CoV-2 infection. As microbiota can influence health, it may change with COVID-19. This study investigated differences in oral microbiota between COVID-19 patients with and without long COVID.
    METHODS: Based on a prospective follow-up investigation, this nested case-control study evaluated the differences in oral microbiota in individuals with and without long COVID (Symptomatic and Asymptomatic groups), which were assessed by 16S rRNA sequencing on tongue coating samples. A predictive model was established using machine learning based on specific differential microbial communities.
    RESULTS: One-hundred-and-eight patients were included (n=54 Symptomatic group). The Symptomatic group had higher Alpha diversity indices (observed_otus, Chao1, Shannon, and Simpson indices), differences in microbial composition (Beta diversity), and microbial dysbiosis with increased diversity and relative abundance of pathogenic bacteria. Marker bacteria (c__Campylobacterota, o__Coriobacteriales, o__Pseudomonadales, and o__Campylobacterales) were associated with long COVID by linear discriminant analysis effect size and receiver operating characteristic curves (AUC 0.821).
    CONCLUSIONS: There were distinct variations in oral microbiota between COVID-19 patients with and without long COVID. Changes in oral microbiota may indicate long COVID.
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