Northwest Iran

  • 文章类型: Multicenter Study
    背景:弓形虫病是免疫抑制患者和孕妇的严重或危及生命的疾病。这项研究调查了弓形虫感染与COVID-19中度疾病患者之间的可能关联。
    方法:在大不里士健康参考实验室从患者身上采集了70份血液样本,伊朗西北部,2021年4月至2021年9月。此外,70例年龄(37±15岁)和性别分布相同的健康受试者进行种族匹配。使用ELISA检查血清样品以检测抗弓形虫抗体。基于B1和GRA6基因扩增巢式PCR靶标。对GRA6扩增子进行测序和系统发育分析。
    结果:基于IgG滴度的弓形虫病血清阳性率在COVID-19患者中为35.7%,在对照组中为27.1%,与健康受试者相比,COVID‑19患者的弓形虫血清阳性与弓形虫血清阳性无关(P=0.18)。反T.在任何患者和健康个体中均未发现刚地IgM。根据B1和GRA6基因的PCR扩增,COVID-19患者中弓形虫的频率为14.2%(10/70)。然而,健康组未检测到弓形虫感染。弓形虫感染患者(430-450细胞/mm3)的CD4T细胞计数相对低于对照组(500-1500细胞/mm3)。患者中具有I型弓形虫菌株的高遗传多样性(Hd:0.710)。结果表明,食用生蔬菜和与流浪猫密切接触可增加弓形虫在COVID-19患者中的传播(P<0.01)。
    结论:目前的研究表明,I型弓形虫感染在大不里士的COVID-19患者中明显流行;然而,弓形虫的发生与COVID-19的严重程度之间没有显着关联。为了做出更准确的健康决定,需要对伊朗人口的不同种族群体进行更大的样本量的多中心调查。
    BACKGROUND: Toxoplasmosis is a serious or life-threatening disease in immunosuppressed patients and pregnant women. This study examined the likely association between Toxoplasma gondii infection and COVID-19 patients with moderate illness.
    METHODS: Seventy blood samples were collected from patients at the Health Reference Laboratory of Tabriz, Northwest Iran from April 2021 to September 2021. In addition, 70 healthy subjects of the same age (37 ± 15 years) and sex distribution were ethnically matched. Sera samples were examined for the detection of anti-Toxoplasma antibodies using ELISA. Nested-PCR targets were amplified based on the B1 and GRA6 genes. GRA6 amplicons were subjected to sequencing and phylogenetic analysis.
    RESULTS: The seroprevalence of toxoplasmosis based on IgG titer was 35.7% in the COVID‑19 patients and 27.1% in the control group, representing not to be associated with the Toxoplasma seropositivity in COVID‑19 patients (P = 0.18) compared to healthy subjects. Anti-T. gondii IgM was not found in any of the patients and healthy individuals. According to PCR amplification of the B1 and GRA6 genes, the frequency of T. gondii in COVID-19 patients was 14.2% (10/70). However, no T. gondii infection was detected in the healthy group. The CD4+T cell count was relatively lower in toxoplasmosis-infected patients (430-450 cells/mm3) than in control group (500-1500 cells/mm3). High genetic diversity (Hd: 0.710) of the type I strain of T. gondii was characterized in the patients. Present results showed that consumption of raw vegetables and close contact with stray cats can increase the transmission of T. gondii to COVID-19 patients (P < 0.01).
    CONCLUSIONS: The current study revealed that T. gondii type I infection is unequivocally circulating among the COVID-19 patients in Tabriz; However, no significant association was observed between the occurrence of Toxoplasma and the severity of COVID-19. To make more accurate health decisions, multicenter investigations with a larger sample size of different ethnic groups of the Iranian population are needed.
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    文章类型: Case Reports
    Myiasis is the infestation of animals or man tissues by parasitic dipterous fly larvae. Wound myiasis is the result of fly egg deposition on decaying flesh or pus discharging wounds. This case report describes a type of wound myiasis caused by Calliphora spp. in a Flamingo (Phoenicopterus ruber) from East Azerbaijan Province, Iran. A 3-yr-old female Flamingo was suffering in its left wing leading to an extensive discharging wound, which was heavily infested by maggots (fly larvae). The examination of external morphological characters of the second and third-instar larvae, posterior spiracles and internal cephalopharyngeal skeleton, led to the identification of the Calliphora spp. fly genus. Treatment consisted of removal of the larvae and surgical debridement, then spray of antibiotic and toxic drug. Following removal of larvae and treatment, the symptoms completely resolved within the last hour and remained asymptomatic several weeks later. This is the first report of wound myiasis in a Flamingo (Phoenicopterus ruber) by the facultative myiasis agent Calliphora spp. in Iran and the world.
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  • 文章类型: Journal Article
    In genetic diversity and population structure of Echinococcus granulosus, the gene flow can illustrate how the Echinococcus isolates have epidemiologically drifted among endemic neighboring countries. 51 isolates of hydatid cysts were collected from human, dog, cattle and sheep in northwest Iran, where placed co-border with Turkey. DNA samples were extracted, amplified and subjected to sequence analysis of NADH dehydrogenase subunit 1 (nad1) and cytochrome oxidase subunit 1 (cox1) genes. As well, sequences of Echinococcus at east to the southeast regions of Turkey were retrieved from GenBank database for the cox1 gene. The confirmed isolates were grouped as G1 (n = 74) and G3 (n = 6) genotypes. 31 unique haplotypes were identified inferred by the analyzed sequences of cox1 among two distinct populations. A parsimonious network of the sequence haplotypes displayed star-like features in the overall population containing TUR1, IR15 and IR22 as the most common haplotypes. According to AMOVA test, the high value of haplotype diversity (0.94758-0.98901) of E. granulosus was reflected the total genetic variability within populations while nucleotide diversity was low (0.00727-0.01046) in Iranian and Turkish metapopulations. Neutrality indices of the cox1 were shown negative values (-15.078 to -10.057) in Echinococcus populations which indicating a significant divergence from neutrality. A pairwise fixation index (Fst) as a degree of gene flow was partially high value for all populations (0.151). The statistically Fst value indicates that E. granulosus sensu stricto (G1-G3) are genetically moderate differentiated among Iranian and Turkish isolates. The occurrence of TUR1 and IR15 elucidate that there is possibly the dawn of domestication due to transfer of alleles between populations through the diffusion of stock raising or anthropogenic movements. To evaluate the hypothetical evolutionary scenario, further exploration is necessitated to analyze isolates from various host species in rest Middle East countries.
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  • 文章类型: Journal Article
    在Entamoeba分离株的微观进化尺度中,基因迁移显示了Entamoebaspp。在流行病学上在边境国家之间漂移。从患有胃肠道疾病的病人身上抽取了五百份粪便样本,腹痛,和萨格兹的腹泻,伊朗西北部位于伊拉克边境国家内。根据寄生虫学技术,提取DNA样品,并通过18SrRNA区域的聚合酶链反应(PCR)进行扩增,以鉴定Entamoeba感染。区分Entamoebaspp。,进行了多重PCR。对扩增子进行测序以重新确认其异质性性状和系统发育分析。此外,从GenBank数据库中检索到伊拉克的溶组织内阿米巴序列。疑似分离株被诊断为溶组织大肠杆菌(2.2%),Entamoebamoshkovskii(1%),和Entamoebadispar(0.4%)。在分离物中未检测到混合的内阿米巴感染。序列单倍型的简约网络在包含E.h1,E.d2和E.m3作为最常见的单倍型的整体分离株中显示出星形特征。根据分子方差分析(AMOVA)检验,溶组织大肠杆菌的单倍型多样性(0.700至0.800)的高部分值显示出种群内的总遗传变异性,而伊朗和伊拉克的代谢种群中的核苷酸多样性较低。18SrRNA的中性指数在溶组织大肠杆菌种群中显示为负值,表明与中性的显着偏差。作为基因流程度的成对固定指数(F-statistics[Fst])对于所有人群(0.001)都很低,而移民人数为2.48。统计上的Fst值表明,在伊朗和伊拉克的共享分离株中,溶组织大肠杆菌分离株没有遗传分化。在两个区域种群之间发生E.h1表明,由于等位基因通过寄主迁移和生态变化从一个种群转移到另一个种群,因此存在Entamoeba流的曙光。为了评估假设的进化情景,分析Entamoeba需要进一步的研究。在邻近的中东国家。
    In the microevolutionary scales of Entamoeba isolates, the gene migration shows how Entamoeba spp. has epidemiologically drifted among border countries. Five hundred fecal samples were taken from patients suffering gastrointestinal disorders, abdominal pain, and diarrhea at Saggez, northwest Iran located within the border Iraq country. Following parasitological techniques, DNA samples were extracted and amplified by polymerase chain reaction (PCR) of 18S rRNA region to identify Entamoeba infections. To distinguish the Entamoeba spp., a multiplex PCR was conducted. Amplicons were sequenced to reconfirm their heterogeneity traits and phylogenetic analysis. Additionally, Entamoeba histolytica sequences of Iraq were retrieved from GenBank database. The suspected isolates were diagnosed as E. histolytica (2.2 %), Entamoeba moshkovskii (1 %), and Entamoeba dispar (0.4 %). Mixed Entamoeba infections did not detect among isolates. A parsimonious network of the sequence haplotypes displayed star-like features in the overall isolates containing E.h1, E.d2, and E.m3 as the most common haplotypes. According to analysis of molecular variance (AMOVA) test, high partial value of haplotype diversity (0.700 to 0.800) of E. histolytica was shown the total genetic variability within populations while nucleotide diversity was low among Iranian and Iraqi metapopulations. Neutrality indices of the 18S rRNA were shown negative values in E. histolytica populations which indicating significant deviations from neutrality. A pairwise fixation index (F-statistics [Fst]) as a degree of gene flow had a low value for all populations (0.001) while the number of migrants was 2.48. The statistically Fst value indicates that E. histolytica isolates are not genetically differentiated among shared isolates of Iran and Iraq. Occurrence of E.h1 between two regional populations indicates that there is dawn of Entamoeba flow due to transfer of alleles from one population to another population through host mobility and ecological alterations. To evaluate the hypothetical evolutionary scenario, further study is required to analyze Entamoeba spp. in the neighboring Middle East countries.
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  • 文章类型: Journal Article
    Cystic echinococcosis (CE), caused by larval stages of the tapeworm Echinococcus granulosus, is one of the most important zoonoses distributed worldwide. Genotype analysis of the parasite isolates from various hosts is required to better understand the host specificity and transmission routes. The aim of this study was to identify the genotypes of E. granulosus isolated from humans and domestic animals from northwest of Iran (Zanjan Province) using the mitochondrial cox1 gene sequence. A total of 86 hydatid cysts including 49 sheep and 28 cattle isolates from the slaughterhouse and nine human isolates from surgical wards of local hospitals were collected. The isolates were subjected to DNA extraction, PCR amplification, and sequence. Eighty-two (95.35 %) isolates, including 47 sheep, 26 cattle, and all nine human isolates, were determined as G1 genotype, and the remaining four (4.65 %), including two sheep and two cattle isolates, were identified as G3 genotype. From the cox1 sequence data, 13 different haplotypes (10 G1s and three G3s) were detected and named as EGH1-EGH13 (GenBank accession numbers, KP859559-KP859571). EGH1 was the major variant among the haplotypes, and it was identified in 46 (53.49 %) isolates (31 sheep, 14 cattle, and one human). Alignment of the partial cox1 sequences showed 12 point mutations including seven (58.3 %) synonymous and five (41.7 %) non-synonymous substitutions. Based on the results, G1 was the major genotype of E. granulosus in northwest of Iran affecting sheep, cattle, and humans. In addition, a minor group of G3 genotype was found to be circulating in this region.
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