Multivariate

多变量
  • 文章类型: Journal Article
    在典型和非典型发育中发生的复杂的结构和功能变化需要多维方法来更好地了解发展精神病理学的风险。这里,我们同时研究了青少年脑认知发育数据集中与精神病理学维度相关的结构和功能脑网络模式.确定了几个组件,概括精神病理学的等级制度,一般精神病理学(P)因素解释了与多模态成像特征的大多数协方差,在内化的同时,外部化,和神经发育维度均与不同的形态和功能连接特征相关。与p因子和神经发育维度相关的连接特征遵循皮质组织的感觉到跨模态轴,这与复杂认知的出现和精神病理学的风险有关。结果在两个独立的数据子样本中一致,支持普遍性,并且对分析参数的变化具有鲁棒性。我们的发现有助于更好地理解支撑精神病理学维度的生物学机制,并且可以提供基于大脑的脆弱性标记。
    Complex structural and functional changes occurring in typical and atypical development necessitate multidimensional approaches to better understand the risk of developing psychopathology. Here, we simultaneously examined structural and functional brain network patterns in relation to dimensions of psychopathology in the Adolescent Brain Cognitive Development dataset. Several components were identified, recapitulating the psychopathology hierarchy, with the general psychopathology (p) factor explaining most covariance with multimodal imaging features, while the internalizing, externalizing, and neurodevelopmental dimensions were each associated with distinct morphological and functional connectivity signatures. Connectivity signatures associated with the p factor and neurodevelopmental dimensions followed the sensory-to-transmodal axis of cortical organization, which is related to the emergence of complex cognition and risk for psychopathology. Results were consistent in two separate data subsamples, supporting generalizability, and robust to variations in analytical parameters. Our findings help in better understanding biological mechanisms underpinning dimensions of psychopathology, and could provide brain-based vulnerability markers.
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  • 文章类型: Journal Article
    多变量疾病图谱对公共卫生研究具有重要意义。因为它提供了对健康结果的空间模式的见解。在处理空间计数数据时,广泛用于绘制空间相关健康数据的地统计学方法遇到了挑战。这些包括异质性,零膨胀分布和不可靠的估计,并导致在估计空间依赖性和较差的预测时遇到困难。人口规模的变化进一步使从计数的风险估计变得复杂。这项研究引入了多变量Poissoncokriging来预测和过滤疾病风险。包括目标变量和多个辅助变量之间的成对相关性。通过模拟实验,并应用于宾夕法尼亚州的人类免疫缺陷病毒发病率和性传播疾病数据,我们展示了准确的疾病风险估计,可以捕获细微的变化。该方法在预测和平滑方面与普通泊松克里格法进行了比较。模拟研究的结果表明,使用辅助相关变量时,均方预测误差降低,均方预测误差值下降高达50%。这种增益在真实的数据分析中更加明显,其中,相对于泊松克里金法,泊松克里金法的均方预测误差下降了74%,强调纳入次要信息的价值。这项工作的结果强调了泊松协同作用在疾病测绘和监测中的潜力,提供更丰富的风险预测,更好地表示空间相互依存关系,识别高风险和低风险区域。
    Multivariate disease mapping is important for public health research, as it provides insights into spatial patterns of health outcomes. Geostatistical methods that are widely used for mapping spatially correlated health data encounter challenges when dealing with spatial count data. These include heterogeneity, zero-inflated distributions and unreliable estimation, and lead to difficulties when estimating spatial dependence and poor predictions. Variability in population sizes further complicates risk estimation from the counts. This study introduces multivariate Poisson cokriging for predicting and filtering out disease risk. Pairwise correlations between the target variable and multiple ancillary variables are included. By means of a simulation experiment and an application to human immunodeficiency virus incidence and sexually transmitted diseases data in Pennsylvania, we demonstrate accurate disease risk estimation that captures fine-scale variation. This method is compared with ordinary Poisson kriging in prediction and smoothing. Results of the simulation study show a reduction in the mean square prediction error when utilizing auxiliary correlated variables, with mean square prediction error values decreasing by up to 50%. This gain is further evident in the real data analysis, where Poisson cokriging yields a 74% drop in mean square prediction error relative to Poisson kriging, underscoring the value of incorporating secondary information. The findings of this work stress on the potential of Poisson cokriging in disease mapping and surveillance, offering richer risk predictions, better representation of spatial interdependencies, and identification of high-risk and low-risk areas.
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  • 文章类型: Journal Article
    从真实世界的离散制造车间聚集,该数据集的特点是测量气动压力和电流在生产过程中。跨越7天,涵盖约150个加工单位,将数据组织为以100Hz采样的时间序列。被观察的机器执行24个步骤来处理每个单元。时间序列中的每个测量,被注释,将其链接到由用于加工单件的机器执行的24个加工步骤中的一个。将时间序列分割成连续区域的恒定处理步骤标签导致3674个标记的片段,每个都包含生产过程的一部分。标签丰富的数据集有助于使用监督学习技术,像时间序列分类,并支持无监督方法的测试,例如时间序列数据的聚类。该数据集的重点是用于小型消费级电驱动组件(被测设备-DUT)的末端测试机。机器在评估每个DUT的过程中执行多个动作,数据集捕获所涉及的气动压力和电流。这些测量与测试机的内部状态转换对齐进行分段,每个都对应于操纵观察下的设备所采取的不同动作。所包含的部分为每个动作提供了不同的压力和电流特征,使数据集对于开发用于工业(特别是离散)过程的非侵入性监测的算法很有价值。
    Gathered from a real-world discrete manufacturing floor, this dataset features measurements of pneumatic pressure and electrical current during production. Spanning 7 days and encompassing approximately 150 processed units, the data is organized into time series sampled at 100 Hz. The observed machine performs 24 steps to process each unit. Each measurement in the time series, is annotated, linking it to one of the 24 processing steps performed by the machine for processing of a single piece. Segmenting the time series into contiguous regions of constant processing step labels results in 3674 labeled segments, each encompassing one part of the production process. The dataset enriched with labels facilitates the use of supervised learning techniques, like time series classification, and supports the testing of unsupervised methods, such as clustering of time series data. The focus of this dataset is on an end-of-line testing machine for small consumer-grade electric drive assemblies (device under test - DUT). The machine performs multiple actions in the process of evaluating each DUT, with the dataset capturing the pneumatic pressures and electrical currents involved. These measurements are segmented in alignment with the testing machine\'s internal state transitions, each corresponding to a distinct action undertaken in manipulating the device under observation. The included segments offer distinct signatures of pressure and current for each action, making the dataset valuable for developing algorithms for the non-invasive monitoring of industrial (specifically discrete) processes.
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  • 文章类型: Journal Article
    背景:结直肠癌肝转移的发生显著影响预后。现有研究表明,原发肿瘤的位置,血管浸润,淋巴结转移,术前肿瘤标志物异常是结直肠癌肝转移的危险因素。PD-L1(程序性细胞死亡1配体1)的阳性表达可能是鼻咽癌和胃癌的有利预后指标。其中CPS(联合阳性评分)量化PD-L1表达水平。根据以前的研究,探讨CPS作为结直肠癌肝转移的潜在危险因素,并综合其他独立危险因素,建立结直肠癌肝转移的新预测模型。
    方法:对湘雅二医院经病理确诊的437例结直肠癌患者进行回顾性分析。中南大学,从2019年1月1日至2021年12月31日。收集数据,包括CPS,年龄,性别,原发肿瘤位置,Ki-67表达,病理分化,神经入侵,血管浸润,淋巴结转移,和术前肿瘤标志物。使用Youden指数确定了连续变量CPS的最佳截止点,所有的CPS都根据这个阈值分为高风险和低风险组(低于阈值的分数被认为是高风险,而高于它的被认为是低风险的)。单因素logistic回归分析结直肠癌肝转移的危险因素,然后应用多因素logistic回归分析整合所选择的危险因素。通过构建受试者工作特性(ROC)曲线对所建立的预测模型进行了验证,校正曲线,和DCA(决策曲线分析)。为了可视化目的,构建了一个列线图。
    结果:确定的PD-L1CPS的临界点为4.5,分数低于该阈值表明结直肠癌肝转移的高风险。此外,除直肠以外的原发肿瘤,存在结肠周围淋巴结转移,肿瘤标志物CEA和CA199水平异常是结直肠癌肝转移的独立危险因素。构建的临床预测模型具有良好的预测能力和准确性,ROC曲线下面积为0.871(95%CI0.838-0.904)。
    结论:对CPS作为结直肠癌肝转移的新预测因子进行了探索和验证。基于此,通过整合其他独立危险因素,建立了结直肠癌肝转移的新临床预测模型。DCA,临床影响曲线,基于该模型构建的列线图具有重要的临床意义,为临床实践提供指导。
    BACKGROUND: The occurrence of liver metastasis significantly affects the prognosis of colorectal cancer (CRC). Existing research indicates that primary tumor location, vascular invasion, lymph node metastasis, and abnormal preoperative tumor markers are risk factors for CRC liver metastasis. Positive expression of programmed cell death ligand 1 (PD-L1) may serve as a favorable prognostic marker for nasopharyngeal and gastric cancers, in which combined positive score (CPS) quantifies the level of PD-L1 expression. This study aimed to explore CPS as a potential risk factor for CRC liver metastasis and integrate other independent risk factors to establish a novel predictive model for CRC liver metastasis.
    METHODS: A retrospective analysis was conducted on 437 patients with CRC pathologically diagnosed at The Second Xiangya Hospital of Central South University from January 1, 2019, to December 31, 2021. Data were collected, including CPS, age, gender (male and female), primary tumor location, Ki-67 expression, pathologic differentiation, neural invasion, vascular invasion, lymph node metastasis, and preoperative tumor markers. The optimal cutoff point for the continuous variable CPS was determined using the Youden index, and all CPSs were dichotomized into high- and low-risk groups based on this threshold (scores below the threshold were considered high risk, and score above the threshold were considered low risk). Univariate logistic regression analysis was employed to identify risk factors for CRC liver metastasis, followed by multivariate logistic regression analysis to integrate the selected risk factors. The predictive model was validated through the construction of receiver operating characteristic (ROC) curves, calibration curves, and decision curve analysis (DCA). A nomogram was constructed for visualization.
    RESULTS: The determined cutoff point for PD-L1 CPS was 4.5, with scores below this threshold indicating a high risk of CRC liver metastasis. In addition, primary tumor origin other than the rectum, presence of pericolonic lymph node metastasis, and abnormal levels of tumor markers carcinoembryonic antigen and cancer antigen 19-9 were identified as independent risk factors for CRC liver metastasis. The constructed clinical prediction model demonstrated good predictive ability and accuracy, with an area under the ROC curve of 0.871 (95% CI, 0.838-0.904).
    CONCLUSIONS: The exploration and validation of CPS as a novel predictor of CRC liver metastasis were performed. Based on these findings, a new clinical prediction model for CRC liver metastasis was developed by integrating other independent risk factors. The DCA, clinical impact curve, and nomogram graph constructed on the basis of this model have significant clinical implications and guide clinical practice.
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  • 文章类型: Journal Article
    背景:功能连接作为包括边缘性人格障碍(BPD)在内的精神疾病的潜在生物标志物已经引起了人们的兴趣。然而,小样本量和缺乏研究内复制导致了不同的发现,没有明确的空间焦点。
    目的:评估功能连接标记对BPD的判别性能和泛化性。
    方法:通过三种分组策略定义的116个BPD和72个对照个体的匹配子样本中的全脑fMRI静息状态功能连接。我们使用分类器预测BPD状态,该分类器具有重复交叉验证,基于覆盖整个大脑-全局基于ROI的网络的感兴趣区域(ROI)内部和之间的多尺度功能连通性。基于种子的ROI连接,功能一致性,和体素到体素的连通性-并评估了非匹配数据的遗漏部分中分类的可泛化性。
    结果:全脑连接允许BPD患者与BPD患者的分类(〜70%)匹配的内部交叉验证中的控件。当应用于不匹配的样本外数据时,分类仍然显著(~61-70%)。最高的基于种子的准确度与全球准确度在相似的范围内(~70-75%),但在空间上更具体。最具鉴别力的种子区域包括中线,颞叶和躯体运动区域。多重比较校正后,单变量连通性值不能预测BPD,但是弱的局部效应与最具鉴别力的种子ROI相吻合。通过完整的临床访谈可实现最高的准确性,而自我报告结果仍处于偶然水平。
    结论:总体随机子样本之间的准确性差异很大,全局信号和协变量限制了实际适用性。
    结论:尽管患者群体存在异质性,但空间分布的功能连接模式对BPD具有中等预测作用。
    BACKGROUND: Functional connectivity has garnered interest as a potential biomarker of psychiatric disorders including borderline personality disorder (BPD). However, small sample sizes and lack of within-study replications have led to divergent findings with no clear spatial foci.
    OBJECTIVE: Evaluate discriminative performance and generalizability of functional connectivity markers for BPD.
    METHODS: Whole-brain fMRI resting state functional connectivity in matched subsamples of 116 BPD and 72 control individuals defined by three grouping strategies. We predicted BPD status using classifiers with repeated cross-validation based on multiscale functional connectivity within and between regions of interest (ROIs) covering the whole brain-global ROI-based network, seed-based ROI-connectivity, functional consistency, and voxel-to-voxel connectivity-and evaluated the generalizability of the classification in the left-out portion of non-matched data.
    RESULTS: Full-brain connectivity allowed classification (∼70 %) of BPD patients vs. controls in matched inner cross-validation. The classification remained significant when applied to unmatched out-of-sample data (∼61-70 %). Highest seed-based accuracies were in a similar range to global accuracies (∼70-75 %), but spatially more specific. The most discriminative seed regions included midline, temporal and somatomotor regions. Univariate connectivity values were not predictive of BPD after multiple comparison corrections, but weak local effects coincided with the most discriminative seed-ROIs. Highest accuracies were achieved with a full clinical interview while self-report results remained at chance level.
    CONCLUSIONS: The accuracies vary considerably between random sub-samples of the population, global signal and covariates limiting the practical applicability.
    CONCLUSIONS: Spatially distributed functional connectivity patterns are moderately predictive of BPD despite heterogeneity of the patient population.
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  • 文章类型: Journal Article
    行为意图影响各种任务相关特征的计算。然而,对这些计算的时间过程知之甚少。此外,通常认为,这些计算由特征的联合神经表示控制。但是,对这一观点的支持来自任意组合任务特征和负担能力的范式,因此,需要在工作记忆中表示。因此,本研究使用脑电图和一项经过精心演练的任务,其特征可提供最少的工作记忆表征,以研究特征表征的时间演变及其在大脑中的潜在整合。女性和男性参与者观看并抓住物体或用指关节触摸它们。物体有不同的形状,由重或轻的材料制成,形状和重量与抓握有关,不是为了“指关节”。“使用多变量分析表明,物体形状的表示对于抓握和指关节是相似的。然而,只有在抓取计划的后期阶段,早期的形状表示才会重新激活,这表明感觉运动控制信号反馈到早期视觉皮层。材料/重量的抓取特定表示仅在加载阶段的物体接触后的抓取执行过程中出现。形状和材料的综合表示的趋势也变得特定于抓握,但在运动开始时才短暂。这些结果表明,大脑根据其动作计算的不同子组件的要求,生成相关特征的特定动作表示。我们的结果反对这样的观点,即目标导向的行动不可避免地将任务的所有特征加入到持续和统一的神经表示中。重要性陈述将任务的所有特征集成到联合表示或事件文件中的想法得到广泛支持,但重要的是基于具有任意刺激-响应组合的范例。我们的研究是第一个研究使用脑电图在这种日常生活任务中使用过度学习的刺激-反应映射来搜索特征整合的神经基础的研究。与事件文件的概念相反,我们发现集成表示的证据有限。相反,我们发现,与任务相关的特征在行动的特定阶段形成了表征,建议行动意图重新激活相关特征的表示。我们的结果表明,对于任何类型的目标导向行为,集成表示都不会普遍出现,而是以按需计算的方式出现。
    The intention to act influences the computations of various task-relevant features. However, little is known about the time course of these computations. Furthermore, it is commonly held that these computations are governed by conjunctive neural representations of the features. But, support for this view comes from paradigms arbitrarily combining task features and affordances, thus requiring representations in working memory. Therefore, the present study used electroencephalography and a well-rehearsed task with features that afford minimal working memory representations to investigate the temporal evolution of feature representations and their potential integration in the brain. Female and male human participants grasped objects or touched them with a knuckle. Objects had different shapes and were made of heavy or light materials with shape and weight being relevant for grasping, not for \"knuckling.\" Using multivariate analysis showed that representations of object shape were similar for grasping and knuckling. However, only for grasping did early shape representations reactivate at later phases of grasp planning, suggesting that sensorimotor control signals feed back to the early visual cortex. Grasp-specific representations of material/weight only arose during grasp execution after object contact during the load phase. A trend for integrated representations of shape and material also became grasp-specific but only briefly during the movement onset. These results suggest that the brain generates action-specific representations of relevant features as required for the different subcomponents of its action computations. Our results argue against the view that goal-directed actions inevitably join all features of a task into a sustained and unified neural representation.
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  • 文章类型: Journal Article
    在存在竞争风险的情况下,研究与临床结果相关的治疗或暴露的数据分析方法历史悠久,通常具有假设的推理目标,因此需要对可用数据的可识别性进行强有力的假设。这里的数据分析方法被认为是基于单一和更高维的边际危险率,在标准独立审查假设下可识别的数量。这些自然导致联合生存功能估计器对感兴趣的结果,包括相互竞争的风险结果,为解决各种数据分析问题提供依据。这些方法将使用模拟和妇女健康倡议队列和临床试验数据集进行说明,和额外的研究需求将被描述。
    Data analysis methods for the study of treatments or exposures in relation to a clinical outcome in the presence of competing risks have a long history, often with inference targets that are hypothetical, thereby requiring strong assumptions for identifiability with available data. Here data analysis methods are considered that are based on single and higher dimensional marginal hazard rates, quantities that are identifiable under standard independent censoring assumptions. These lead naturally to joint survival function estimators for outcomes of interest, including competing risk outcomes, and provide the basis for addressing a variety of data analysis questions. These methods will be illustrated using simulations and Women\'s Health Initiative cohort and clinical trial data sets, and additional research needs will be described.
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  • 文章类型: Journal Article
    为了增强Transformer模型的长期多变量预测性能,同时最大限度地减少计算需求,本文介绍了联合时频域变压器(JTFT)。JTFT结合时域和频域表示来进行预测。频域表示通过利用少量的可学习频率来有效地提取多尺度依赖性,同时保持稀疏性。同时,时域(TD)表示是从固定数量的最新数据点得出的,加强局部关系的建模,减轻非平稳性的影响。重要的是,表示的长度保持独立于输入序列长度,使JTFT能够实现线性计算复杂度。此外,提出了一个低秩的注意力层,以有效地捕获跨维依赖关系,从而防止由于时间和信道建模的纠缠而导致的性能下降。在八个真实数据集上的实验结果表明,JTFT在预测性能方面优于最先进的基线。
    In order to enhance the performance of Transformer models for long-term multivariate forecasting while minimizing computational demands, this paper introduces the Joint Time-Frequency Domain Transformer (JTFT). JTFT combines time and frequency domain representations to make predictions. The frequency domain representation efficiently extracts multi-scale dependencies while maintaining sparsity by utilizing a small number of learnable frequencies. Simultaneously, the time domain (TD) representation is derived from a fixed number of the most recent data points, strengthening the modeling of local relationships and mitigating the effects of non-stationarity. Importantly, the length of the representation remains independent of the input sequence length, enabling JTFT to achieve linear computational complexity. Furthermore, a low-rank attention layer is proposed to efficiently capture cross-dimensional dependencies, thus preventing performance degradation resulting from the entanglement of temporal and channel-wise modeling. Experimental results on eight real-world datasets demonstrate that JTFT outperforms state-of-the-art baselines in predictive performance.
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  • 文章类型: Preprint
    睡眠对于最佳功能和健康至关重要。互连到多个生物,心理和社会环境因素(即,生物心理社会因素),睡眠的多维性质在研究中很少被利用。这里,我们采用了一种数据驱动的方法来识别睡眠-生物心理社会概况,将自我报告的睡眠模式与个体间的健康状况联系起来,认知,770名健康年轻人的生活方式因素。我们发现了五个侧写,包括两个反映与一般睡眠不良或没有睡眠投诉的报告相关的一般精神病理学的概况(即,睡眠弹性)分别。其他三个配置文件是由镇静催眠药的使用和社会满意度驱动的,睡眠持续时间和认知表现,和睡眠障碍与认知和心理健康有关。此外,确定的睡眠-生物心理社会概况显示了大脑网络组织的独特模式。特别是,躯体运动网络连接改变涉及睡眠和生物心理社会因素之间的关系。这些配置文件可以潜在地解开个体之间的相互作用,健康,认知和生活方式-装备研究和临床设置,以更好地支持个人的福祉。
    Sleep is essential for optimal functioning and health. Interconnected to multiple biological, psychological and socio-environmental factors (i.e., biopsychosocial factors), the multidimensional nature of sleep is rarely capitalized on in research. Here, we deployed a data-driven approach to identify sleep-biopsychosocial profiles that linked self-reported sleep patterns to inter-individual variability in health, cognition, and lifestyle factors in 770 healthy young adults. We uncovered five profiles, including two profiles reflecting general psychopathology associated with either reports of general poor sleep or an absence of sleep complaints (i.e., sleep resilience) respectively. The three other profiles were driven by sedative-hypnotics-use and social satisfaction, sleep duration and cognitive performance, and sleep disturbance linked to cognition and mental health. Furthermore, identified sleep-biopsychosocial profiles displayed unique patterns of brain network organization. In particular, somatomotor network connectivity alterations were involved in the relationships between sleep and biopsychosocial factors. These profiles can potentially untangle the interplay between individuals\' variability in sleep, health, cognition and lifestyle - equipping research and clinical settings to better support individual\'s well-being.
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  • 文章类型: Journal Article
    水牛精液性状是影响农场生育能力和盈利能力的重要经济性状。精液特征的遗传改良重要是详细的遗传改良。本研究旨在评估育种值与精液性状表型值之间的关系(VOL,MM,LS,埃及水牛公牛的AS和CONC)。从2009年至2019年,在ILMTC实验室从26头公牛中收集并鉴定了总共7761种正常精液射精。对于VOL,MM,LS,AS,CONC,实际平均值为3.89毫升,62.37%,60.64%,3.94%,和0.67×109精子/mL,分别。使用贝叶斯程序估计精液性状的育种值的预测。在主成分分析(PCA)中使用估计的标准化EBV和表型值。在五台电脑中,一个PC(PC1)具有>1个特征值,占SEBV总变异的87.19%,两个PC的特征值>1,分别占表型值总变异的59.61%和21.35%。一起,PC1和PC2分别占SEBV总方差的97.97%和表型值总方差的80.96%。前两个组成部分的图显示了按组将性状分为两个不同的方向。这表明每个群体都受到相似的遗传影响。因此,选择可以单独为每一组不影响其他。主成分分析减少变量来描述水牛精液数据中的关键信息。
    Buffalo bull semen traits are economically important traits that influence farm fertility and profitability. Genetic improvement of semen characteristics is an important detail of the genetic improvement. This study was conducted to assess the relationship between the breeding values as well as the phenotypic values for semen traits (VOL, MM, LS, AS and CONC) of the Egyptian buffalo bulls. A total of 7761 normal semen ejaculates were collected and characterized at ILMTC laboratory from 26 bulls from 2009 to 2019. For VOL, MM, LS, AS, and CONC, the actual means were 3.89 mL, 62.37%, 60.64%, 3.94%, and 0.67 × 109 sperm/mL, respectively. The prediction of breeding values for semen traits was estimated using a Bayesian procedure. The estimated standardized EBVs and phenotypic values were used in the principal component analysis (PCA). Of five PCs, one PC (PC1) had > 1 eigenvalues that was responsible for 87.19% of the total variation of SEBV, and two PCs had > 1 eigenvalues that were responsible for 59.61% and 21.35% of the total variation of the phenotypic values. Together, PC1 and PC2 accounted for 97.97% of the total variance of SEBV and 80.96% of the total variance of phenotypic values. A graphs of the first two components showed the traits separated into two different directions by group. This indicates each group was under similar genetic influence. Therefore, selection can be done separately for each group without influencing the other. Principal component analysis reduced variables to describe the key information in buffalo semen data.
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