Mixed cultures

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  • 文章类型: Journal Article
    混合热化学-生物过程具有增强从有机废物中回收碳和能量的潜力。这项工作旨在评估多功能工艺的碳和能量回收潜力,以同时隔离合成气和解毒热解冷凝物(PAC)用于短链羧酸盐生产。为了评估合成气和PAC混合培养共发酵的相关工艺参数,在增加的PAC负载速率下,在中温(37°C)和嗜热(55°C)条件下运行两个相同的反应器。中温和嗜热过程都将合成气和PAC中的至少50%的能量回收为短链羧酸盐。在中温合成气和PAC共发酵过程中,甲烷生成被完全抑制,而乙酸,乙醇和丁酸是主要代谢产物。超过90%的基于16SrRNA的扩增子测序变体被分配到严格意义梭菌12。在高温过程中,另一方面,共生菌,Syntrophaceticus,热厌氧杆菌,甲烷热杆菌和甲烷杆菌可能在芳烃降解和甲烷生成中起关键作用,分别,嗜热过程中,莫雷拉和甲烷热杆菌是主要的一氧化碳营养菌。高生物质浓度对于在高PAC负载下维持稳定的工艺操作是必要的。在第二阶段反应器中,米曲霉转化乙酸盐,丙酸和丁酸从第一阶段转化为L-苹果酸,确认PAC在抑制水平以下成功解毒。在4%v/v的PAC负荷下,来自中温过程的流出物记录的最高L-苹果酸酯产率为0.26±2.2molL-苹果酸/羧酸盐。结果突出了多功能反应器的潜力,其中厌氧混合培养物同时执行不同的过程角色,如碳固定,废水脱毒和羧酸盐中间生产。中间羧酸盐形式的回收能量允许它们在随后的发酵阶段中用作底物。
    Hybrid thermochemical-biological processes have the potential to enhance the carbon and energy recovery from organic waste. This work aimed to assess the carbon and energy recovery potential of multifunctional processes to simultaneously sequestrate syngas and detoxify pyrolysis aqueous condensate (PAC) for short-chain carboxylates production. To evaluate relevant process parameters for mixed culture co-fermentation of syngas and PAC, two identical reactors were run under mesophilic (37 °C) and thermophilic (55 °C) conditions at increasing PAC loading rates. Both the mesophilic and the thermophilic process recovered at least 50% of the energy in syngas and PAC into short-chain carboxylates. During the mesophilic syngas and PAC co-fermentation, methanogenesis was completely inhibited while acetate, ethanol and butyrate were the primary metabolites. Over 90% of the amplicon sequencing variants based on 16S rRNA were assigned to Clostridium sensu stricto 12. During the thermophilic process, on the other hand, Symbiobacteriales, Syntrophaceticus, Thermoanaerobacterium, Methanothermobacter and Methanosarcina likely played crucial roles in aromatics degradation and methanogenesis, respectively, while Moorella thermoacetica and Methanothermobacter marburgensis were the predominant carboxydotrophs in the thermophilic process. High biomass concentrations were necessary to maintain stable process operations at high PAC loads. In a second-stage reactor, Aspergillus oryzae converted acetate, propionate and butyrate from the first stage into L-malate, confirming the successful detoxification of PAC below inhibitory levels. The highest L-malate yield was 0.26 ± 2.2 molL-malate/molcarboxylates recorded for effluent from the mesophilic process at a PAC load of 4% v/v. The results highlight the potential of multifunctional reactors where anaerobic mixed cultures perform simultaneously diverse process roles, such as carbon fixation, wastewater detoxification and carboxylates intermediate production. The recovered energy in the form of intermediate carboxylates allows for their use as substrates in subsequent fermentative stages.
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  • 文章类型: Journal Article
    使用耐热和抑制剂耐受的地衣芽孢杆菌DGB和超声波芽孢杆菌DGS15的共培养系统,从木质纤维素稻草衍生的糖混合物中生产乳酸(LA)。在最小的媒体中,芽孢杆菌DGB和DGS15菌株通过分别有效利用葡萄糖和木糖而协同工作。响应面法(RSM)用于优化稻草的预处理,以从100gm的稻草生物量中获得50.852g/L的总还原糖(TRS)的最大产量。稻草的预处理导致其脱木质素,如FTIR光谱所证实,因为1668cm-1的峰由于木质素的去除而消失,扫描电子显微镜(SEM)显示结构和形态特征的破坏。与天然生物量相比,处理过的稻草的结晶度指数(CrI)增加了15.54%。DGB和DGS15分别产生0.64g/g和0.82g/g乳酸,由于它们的共培养导致在15小时内有效利用葡萄糖和木糖(70%),并在48小时内完全利用,生产49.75g/LLA,产量为0.98g/g,生产率为1.036g/L/h,并导致发酵时间减少。芽孢杆菌对稻草的单独水解和水解产物的共发酵(SHCF)。提高了乳酸的产量,可以规避木质纤维素生物质生物精炼中的挑战。
    Lactic acid (LA) production from sugar mixture derived from lignocellulosic rice straw employing co- culture system of thermotolerant and inhibitor tolerant Bacillus licheniformis DGB and Bacillus sonorenesis DGS15 was carried out. In minimal media, both the strains of Bacillus DGB and DGS15 worked together by efficiently utilising glucose and xylose respectively. Response Surface Methodology (RSM) was used for optimisation of pretreatment of rice straw to achieve maximum yield of 50.852 g/L total reducing sugar (TRS) from 100 gm of rice straw biomass. Pretreatment of rice straw resulted in its delignification, as confirmed by FTIR spectroscopy, since the peak at 1668 cm-1 disappeared due to removal of lignin and scanning electron microscopy (SEM) revealed disruption in structural and morphological features. Crystallinity index (CrI) of treated rice straw increased by 15.54% in comparison to native biomass. DGB and DGS15 individually yielded 0.64 g/g and 0.82 g/g lactic acid respectively, where as their co-cultivation led to effective utilisation of both glucose and xylose within 15 h (70%) and complete utilisation in 48 h, producing 49.75 g/L LA with a yield of 0.98 g/g and productivity of 1.036 g/L/h, and resulting in reduction in fermentation time. Separate hydrolysis of rice straw and co-fermentation (SHCF) of hydrolysates by Bacillus spp. enhanced the production of lactic acid, can circumvent challenges in biorefining of lignocellulosic biomass.
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  • 文章类型: Journal Article
    目的:酵母相互作用在葡萄酒化学特征的定义中起着关键作用。出于这个原因,酿酒师对混合发酵越来越感兴趣,采用酿酒酵母和非酵母属菌株。然而,混合发酵的结果通常是矛盾的,因为物种内部的菌株之间存在很大的差异。以前,已证明,在与酿酒酵母的混合发酵中,杆菌属的可培养性丧失是由于细胞之间的物理接触。因此,为了进一步探索以前的观察,不同菌株之间的相互作用机制。研究了混合发酵过程中的芽孢杆菌和酿酒酵母。
    结果:发酵在允许细胞(烧瓶)之间物理接触的条件下进行,但也使用双室发酵系统,其中两种物种的细胞保持分离。还研究了营养竞争和抗微生物化合物生产对酵母-酵母相互作用机制的作用。三Starm使用芽孢杆菌和三种酿酒酵母菌株来研究是否以菌株特异性方式调节相互作用机制。两个物种种群都受到身体接触的影响,尤其是Starm。在发酵过程中失去可培养性的杆菌。此外,Starm的可培养性丧失。在烧瓶中观察到的杆菌菌株比在双室系统中更早。观察到的现象以应变对依赖的方式发生。Starm.杆菌消失似乎与营养消耗或抑制性化合物的存在无关(本研究中未对其进行测量)。
    结论:总体而言,本研究的结果表明,细胞与细胞的接触在非酵母属的早期死亡中起作用,但观察到的程度在很大程度上取决于Starm。芽孢杆菌/测试的酿酒酵母菌株。
    OBJECTIVE: Yeast interactions have a key role in the definition of the chemical profile of the wines. For this reason, winemakers are increasingly interested in mixed fermentations, employing Saccharomyces cerevisiae and non-Saccharomyces strains. However, the outcome of mixed fermentations is often contradictory because there is a great variability among strains within species. Previously, it was demonstrated that the loss of culturability of Starmerella bacillaris in mixed fermentations with S. cerevisiae was due to the physical contact between cells. Therefore, to further explore previous observations, the interaction mechanisms among different strains of Starm. bacillaris and S. cerevisiae during mixed fermentations were investigated.
    RESULTS: Fermentations were conducted under conditions that allow physical contact between cells (flasks) but also using a double-compartment fermentation system in which cells of both species were kept separate. The role of competition for nutrients and antimicrobial compounds production on yeast-yeast interaction mechanisms was also investigated. Three Starm. bacillaris and three S. cerevisiae strains were used to investigate if interaction mechanisms are modulated in a strain-specific way. Both species populations were affected by physical contact, particularly Starm. bacillaris that lost its culturability during fermentation. In addition, loss of culturability of Starm. bacillaris strains was observed earlier in flasks than in the double-compartment system. The phenomena observed occurred in a strain couple-dependent way. Starm. bacillaris disappearance seemed to be independent of nutrient depletion or the presence of inhibitory compounds (which were not measured in this study).
    CONCLUSIONS: Overall, the results of the present study reveal that cell-to-cell contact plays a role in the early death of non-Saccharomyces but the extent to which it is observed depends greatly on the Starm. bacillaris/S. cerevisiae strains tested.
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  • 文章类型: Journal Article
    Hanseniasporavineae表现出非凡的积极的酿酒特性,有助于葡萄酒的香气和质地,特别是与常规酵母相比,它能够产生高浓度的苯类和苯丙素化合物。因此,在实践中,连续接种H.vineae和酿酒酵母可以提高葡萄酒的香气质量。在这项工作中,我们评估了增加苯丙氨酸浓度对葡萄酒香气的影响,苯丙素类和苯类的主要氨基酸前体。使用含有150mgN/L酵母可同化氮的霞多丽葡萄汁进行发酵。进行发酵,添加60mg/L的苯丙氨酸而不向果汁中添加任何补充。使用从乌拉圭葡萄园分离的三种不同的H.vineae菌株依次接种Musts,96小时后,接种酿酒酵母以完成该过程。在发酵结束时,通过气相色谱-质谱法和通过专家小组的感官评估来分析葡萄酒的香气。源自芳香族氨基酸的香气根据处理而不同地产生。与不添加苯丙氨酸的对照发酵相比,感官分析显示出更多的花特性和更大的芳香复杂性。此外,发酵在合成必须与纯H.vineae显示,即使酪氨酸可以在没有苯丙氨酸的情况下使用,这种酵母不使用苯丙氨酸合成酪氨酸衍生物。
    Hanseniaspora vineae exhibits extraordinary positive oenological characteristics contributing to the aroma and texture of wines, especially by its ability to produce great concentrations of benzenoid and phenylpropanoid compounds compared with conventional Saccharomyces yeasts. Consequently, in practice, sequential inoculation of H. vineae and Saccharomyces cerevisiae allows to improve the aromatic quality of wines. In this work, we evaluated the impact on wine aroma produced by increasing the concentration of phenylalanine, the main amino acid precursor of phenylpropanoids and benzenoids. Fermentations were carried out using a Chardonnay grape juice containing 150 mg N/L yeast assimilable nitrogen. Fermentations were performed adding 60 mg/L of phenylalanine without any supplementary addition to the juice. Musts were inoculated sequentially using three different H. vineae strains isolated from Uruguayan vineyards and, after 96 h, S. cerevisiae was inoculated to complete the process. At the end of the fermentation, wine aromas were analysed by both gas chromatography-mass spectrometry and sensory evaluation through a panel of experts. Aromas derived from aromatic amino acids were differentially produced depending on the treatments. Sensory analysis revealed more floral character and greater aromatic complexity when compared with control fermentations without phenylalanine added. Moreover, fermentations performed in synthetic must with pure H. vineae revealed that even tyrosine can be used in absence of phenylalanine, and phenylalanine is not used by this yeast for the synthesis of tyrosine derivatives.
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  • 文章类型: Journal Article
    聚羟基链烷酸酯(PHA)是由环境中的300多种微生物合成的天然存在的生物聚合物家族。已经研究了这些生物聚合物作为替代化石燃料基聚合物的来源材料;因此生物聚合物的合成及其表征是优化工艺的关键步骤。正因为如此,使用产生PHA的微生物生物产生PHA是目前的主要过程;然而,使用微生物混合培养(MMC),如废水污泥,正在引起注意。不同于纯粹的文化,MMC具有较高的培养条件耐受性,因为物种组成复杂,易于从污水处理厂获得,缩短了培养时间,降低成本,并促进应用。基于MMC的PHA中的主要约束是从更复杂的矩阵中提取和量化PHA。在本文中,傅里叶变换红外(FTIR)光谱被评估为在MMC系统中用作PHA的定量方法。首先,市售的分析标准,由PHA/PHB组成,和两种不同的溶剂(氯仿和二氯甲烷),通过这种方法进行了使用和测试,用KBr卡和液体电池方法,并通过气相色谱-质谱(GC/MS)对结果进行验证。然后使用来自废水处理厂的12个样品测试该方法。如通过该方法测定的,在用氯仿作为溶剂提取后,生物质中的PHA含量从3.42w/w%变化至1.22w/w%。在四种不同的组合标准中,最好的是PHB和氯仿,和FTIR-液体细胞在复杂基质中对PHA定量显示出更高的前景。
    Polyhydroxyalkanoate (PHA) is a family of naturally-occurring biopolymers synthesized by more than 300 microorganisms in the environment. These biopolymers have been investigated as a source material to substitute fossil fuel-based polymers; hence the synthesis of biopolymers and their characterization is a critical step in optimizing the process. Because of this, the biological production of PHA using PHA-producing microorganisms is currently the dominating process; however, the use of microbial mixed culture (MMC), such as wastewater sludge, is gaining attention. Different than pure cultures, MMC has higher culturing condition tolerance since the complex species composition and is easily obtained from wastewater treatment plants, which shortens the culturing time, lowers the cost, and promotes the application. The main constraint in MMC-based PHA is the extraction and quantification of PHA from the more complex matrix. In this paper, Fourier-transform infrared (FTIR) spectroscopy is evaluated to be used as a quantification method of PHA in MMC systems. Firstly, commercially available analytical standards, which consist of PHA/PHB, and two different solvents (chloroform and dichloromethane), were used and tested by this method, with KBr card and liquid cell methods, and the results are validated by gas chromatography mass spectrometry (GC/MS). The method was then tested using 12 samples from wastewater treatment plants. The PHA content in biomass varied from 3.42 w/w% to 1.22 w/w% following extraction with chloroform as solvent as determined by this method. In the four different combination standards, the best one is consisted of PHB and chloroform, and FTIR-liquid cell showed higher promise for PHA quantification in complex matrices.
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  • 文章类型: Journal Article
    全球塑料消费加速了垃圾填埋场和海洋生态系统的环境污染。生物聚合物由于其良好的生物降解性,是市场上最有潜力替代合成聚合物的材料,然而,还有几个缺点,主要与生产成本有关。考虑到上述情况,生物可降解和生物相容性生物塑料的产生是一种替代解决方案,其中一些是由可再生原材料制成的,包括聚羟基链烷酸酯PHAs。尽管已经对具有细胞内积累PHA能力的细菌进行了大量研究,其中,也可以使用混合微生物培养物代替单一微生物来生产PHA,使用具有存储大量PHA的能力的天然微生物聚生体。在这一贡献中,以不同浓度的挥发性脂肪酸为碳源,对发酵产生的PHAs的三种提取和纯化方法进行了评价,使用纯菌株伯克霍尔德氏菌2G-57和来自ElSalitre污水处理厂的活性污泥的混合培养物,为了从环境可持续性的角度选择最佳方法,因为这将有助于过程的可扩展性。通过16S基因的测序鉴定混合培养物。以乙酸为溶剂,从PHA的提取和纯化中获得89%的收率,根据其性质,它比氯仿更“绿色”。获得的聚合物被鉴定为多羟基丁基化的PHB。
    The global consumption of plastics generates accelerated environmental pollution in landfills and marine ecosystems. Biopolymers are the materials with the greatest potential to replace synthetic polymers in the market due to their good biodegradability, however, there are still several disadvantages, mainly related to their production cost. Considering the above, the generation of biodegradable and biocompatible bioplastics stands out as an alternative solution, some of which are made from renewable raw materials, including polyhydroxyalkanoates PHAs. Although much research has been done on bacteria with the capacity for intracellular accumulation of PHAs, among others, it is also possible to produce PHAs using mixed microbial cultures instead of a single microorganism, using natural microbial consortia that have the capacity to store high amounts of PHAs. In this contribution, three methods for the extraction and purification of PHAs produced by fermentation using volatile fatty acids as a carbon source at different concentrations were evaluated, using the pure strain Burkholderia cepacia 2G-57 and the mixed cultures of the activated sludge from the El Salitre WWTP, in order to select the best method from the point of view of environmental sustainability as this will contribute to the scalability of the process. The mixed cultures were identified by sequencing of the 16S gene. A yield of 89% was obtained from the extraction and purification of PHA using acetic acid as a solvent, which according to its properties is \"greener\" than chloroform. The polymer obtained was identified as polyhydroxybutylated PHB.
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  • 文章类型: Journal Article
    白色念珠菌与微生物群之间的相互作用在维持共生生物和病原生物之间的平衡中起着重要作用。尽管细菌在降低酵母致病性中的确切作用仍然知之甚少,到目前为止,已经记录了一些例子:益生菌有效地减少了生物膜的形成,细菌代谢物抑制了菌丝的形成。该研究的目的是根据与大肠杆菌混合的实验培养物中的形态结构和酶谱的变化来分析白色念珠菌的毒力水平。活细胞丰度,在单一和混合培养中分析了细胞多态性和酶谱(C.白色念珠菌+大肠杆菌)。显微镜分析显示,与大肠杆菌混合培养物中的活白色念珠菌细胞数量大幅减少,从培养建立后的485.3±132.1减少到孵育一小时后的238.1±71.2和24小时后的24.4±5.4。单物种培养物和混合培养物24小时的白色念珠菌细胞长度显着不同。我们目前的发现表明,与大肠杆菌接触后,真菌分泌的几种酶显着减少。包括酸性磷酸酶,N-乙酰-β-氨基葡萄糖苷酶,萘酚-AS-BI-磷酸水解酶和亮氨酸芳基酰胺酶。真菌和细菌之间的相互作用似乎非常复杂。一方面,在白色念珠菌与大肠杆菌共孵育期间,细菌刺激酵母细胞的伸长,导致丝状形式的形成;然而,酵母细胞数量及其酶活性显著下降。因此,可以得出结论,虽然大肠杆菌刺激一些致病特性,例如细胞伸长,它还抑制其他毒力特征,例如白色念珠菌的酶活性。
    Interactions between C. albicans and the microbiota play an important role in maintaining the balance between commensal and pathogenic organisms. Although the exact role of bacteria in reducing the pathogenicity of yeast remains poorly understood, a few examples have been documented so far: probiotics administration effectively reduces the formation of biofilm and bacterial metabolites inhibit the formation of hyphae. The aim of the study was to analyze C. albicans virulence levels based on the changes in the morphological structure and enzymatic profile in experimental cultures mixed with Escherichia coli. Viable cell abundance, cell pleomorphism and enzymatic profile were analyzed in single and mixed cultures (C. albicans + E. coli). The microscope analysis showed a large decrease in the number of viable C. albicans cells in mixed cultures with E. coli from 485.3±132.1 immediately after the establishment of the culture to 238.1±71.2 after an hour of incubation and 24.4±5.4 after 24 h. The length of C. albicans cells differed significantly between the single-species cultures and the mixed cultures for 24 h. Our present findings indicate a significant reduction in the secretion of several enzymes by fungi following contact with E. coli, including acid phosphatase, N-acetyl-β-glucosaminidase, naphthol-AS-BI-phosphohydrolase and leucine arylamidase. The interactions between fungi and bacteria appear to be extremely complex. On the one hand, during C. albicans with E. coli co-incubation, the bacteria stimulated the elongation of yeast cells, leading to the formation of a filamentous form; however, the number of yeast cells and their enzymatic activity decreased significantly. Therefore, it can be concluded that while E. coli stimulates some pathogenic properties, e.g. cell elongation, it also inhibits other virulence features, e.g. enzymatic activity of C. albicans.
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  • 文章类型: Journal Article
    运行三个顺序分批反应器,以使用活性污泥作为接种物来富集能够储存聚羟基链烷酸酯(PHA)的微生物群落。它们在相同的操作条件下同时运行(有机负载率,水力和固体保留时间,周期长度,C/N比)只是工作温度的唯一差异:嗜冷(15°C);嗜温性(30°C);和嗜热(48°C)。富集的微生物群落在消费和生产率方面表现出不同的行为。在PHA积累方面,嗜冷性群落能够积累平均量为17.7±5.7wt%的聚(3-羟基丁酸酯-co-3-羟基戊酸酯)(PHBV);嗜温性40.3±7.0wt%PHBV,和以总固体的干重计14.8±0.3重量%的嗜热PHBV。在15°C下,每个选定群落的平均PHBV产量为0.41±0.12CmmolPHBV/CmmolVFA,30°C时0.64±0.05CmmolPHBV/CmmolVFA,和0.39±0.14CmmolPHBV/CmmolVFA在48℃。中温反应器的整体性能优于其他两种,并且在该温度下获得的共聚物含有较高的PHV分数。还测量了所获得的生物聚合物在每个温度下的物理化学性质,并且发现了分子量的主要差异,随着温度的上升趋势。
    Three sequential batch reactors were operated for the enrichment in microbial communities able to store polyhydroxyalkanoates (PHAs) using activated sludge as inoculum. They ran simultaneously under the same operational conditions (organic loading rate, hydraulic and solids retention time, cycle length, C/N ratio) just with the solely difference of the working temperature: psychrophilic (15°C), mesophilic (30°C), and thermophilic (48°C). The microbial communities enriched showed different behaviors in terms of consumption and production rates. In terms of PHA accumulation, the psychrophilic community was able to accumulate an average amount of 17.7 ± 5.7 wt% poly(3-hydroxybutyrate-co-3-hydroxyvalerate) (PHBV), the mesophilic 40.3 ± 7.0 wt% PHBV, and the thermophilic 14.8 ± 0.3 wt% PHBV in dry weight over total solids. The average PHBV production yields for each selected community were 0.41 ± 0.12 CmmolPHBV /CmmolVFA at 15°C, 0.64 ± 0.05 CmmolPHBV /CmmolVFA at 30°C, and 0.39 ± 0.14 CmmolPHBV /CmmolVFA at 48°C. The overall performance of the mesophilic reactor was better than the other two, and the copolymers obtained at this temperature contained a higher PHV fraction. The physico-chemical properties of the obtained biopolymers at each temperature were also measured, and major differences were found in the molecular weight, following an increasing trend with temperature. PRACTITIONER POINTS: PHBV molecular weight is influenced by the operational temperature increasing with it. Increasing temperatures promote the production of HB over HV. The best accumulation performance was found at 30°C for the tested operational conditions.
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  • 文章类型: Journal Article
    过多的农业工业侧流,例如来自乳制品活动的富含乳糖的废水,提供了多种增值机会。在本研究中,在不同的操作条件下测试了细菌和酵母的食品级混合培养物,以进行奶酪乳清渗透物(CWP)的处理和增值,乳清蛋白回收的残留物,微生物蛋白(MP)。在连续好氧发酵设置下,与稀释率(D)相比,碳氮比(C/N)对系统性能和MP质量几乎没有影响,导致最终蛋白质含量高达76%。在高D值下,相反,虽然生物量生产率提高了,氮效率和蛋白质含量降低。与细菌群落不同,酵母被证明是高度稳定的,并且受D的增加影响较小。初步估计表明,仅通过对富含乳糖的乳制品残留物(例如CWP)进行限价,就可以满足未来基于MP的食品生产的2-11%。
    Overabundant agro-industrial side streams such as lactose-rich effluents from dairy activities offer multiple valorisation opportunities. In the present study, a food-grade mixed culture of bacteria and yeasts was tested under different operational conditions for the treatment and the valorisation of cheese whey permeate (CWP), the residue of whey protein recovery, into microbial protein (MP). Under continuous aerobic fermentation settings, the carbon-to-nitrogen (C/N) ratio showed little to no influence on the system performances and MP quality as compared to dilution rates (D), leading to a final protein content as high as 76%. Under high D values, instead, while biomass productivity increased, N-efficiency and protein content decreased. Unlike the bacterial community, the yeast one proved to be highly stable and less influenced by the increase of D. A preliminary estimate indicated that 2-11% of the future MP-based food production could be satisfied by only valorising lactose-rich dairy residues such as CWP.
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