Microbial assimilation

  • 文章类型: Journal Article
    聚对苯二甲酸乙二醇酯(PET)废物的不断积累提出了紧迫的生态挑战,需要有效和经济的处理技术。这里,我们开发了执行化学预处理的化学-生物模块集群,酶促降解,和微生物同化用于PET废物的大规模处理。该模块簇包括(i)化学预处理,涉及通过机械共混以2%的重量比(PET:PCL=98:2)将聚己内酯(PCL)掺入PET中,有效地降低结晶度并增强降解;(ii)使用Thermobifidafusca角质酶变体(4Mz)进行酶促降解,在300g/LPET下实现预处理的PET的完全降解,每克PET的酶负载为1毫克蛋白质;和(iii)微生物同化,华氏红球菌RHA1代谢降解产物,以90%以上的比率同化每个单体。比较生命周期评估表明,我们的模块集群(0.25kgCO2-eq/kgPET)的碳排放量低于其他既定方法的碳排放量。本研究开创了一个无缝结合预处理的闭环系统,降解,和同化过程,从而减轻PET废物对环境的影响并推动循环PET经济的发展。
    The rising accumulation of poly(ethylene terephthalate) (PET) waste presents an urgent ecological challenge, necessitating an efficient and economical treatment technology. Here, we developed chemical-biological module clusters that perform chemical pretreatment, enzymatic degradation, and microbial assimilation for the large-scale treatment of PET waste. This module cluster included (i) a chemical pretreatment that involves incorporating polycaprolactone (PCL) at a weight ratio of 2% (PET:PCL = 98:2) into PET via mechanical blending, which effectively reduces the crystallinity and enhances degradation; (ii) enzymatic degradation using Thermobifida fusca cutinase variant (4Mz), that achieves complete degradation of pretreated PET at 300 g/L PET, with an enzymatic loading of 1 mg protein per gram of PET; and (iii) microbial assimilation, where Rhodococcus jostii RHA1 metabolizes the degradation products, assimilating each monomer at a rate above 90%. A comparative life cycle assessment demonstrated that the carbon emissions from our module clusters (0.25 kg CO2-eq/kg PET) are lower than those from other established approaches. This study pioneers a closed-loop system that seamlessly incorporates pretreatment, degradation, and assimilation processes, thus mitigating the environmental impacts of PET waste and propelling the development of a circular PET economy.
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  • 文章类型: Journal Article
    这项工作报告了发展,在各种条件下在连续流动光反应器中培养的用于城市污水处理的微藻-细菌生物膜的性能和微生物群落。结果表明,微藻-细菌生物膜在没有外部曝气的情况下在9h的HRT下成功形成,在稳态下实现约4690mg/L的生物膜浓度。研究发现,进一步增加HRT至12h并没有改善生物膜的整体积累,而微藻在生物膜中的生长在初始阶段比细菌快,生物膜中叶绿素a和b含量增加。之后,生物膜中的叶绿素a和b含量逐渐稳定在与种子相当的水平,表明微藻和细菌在生物膜中的分布平衡。约90%的TOC,微藻-细菌生物膜主要通过在稳态光反应器中以12h的HRT和外部曝气运行的同化来去除71.4%的总氮和72.6%的磷。群落分析进一步揭示了蓝藻和氯氟菌是主要成分,而绿藻门似乎是生物膜中主要的真核藻类群落。这项研究可以为在连续流动光反应器中开发微藻-细菌生物膜以实现可持续的低碳市政污水处理提供新的见解。
    This work reported the development, performance and microbial community of microalgal-bacterial biofilms cultivated in a continuous-flow photoreactor for municipal wastewater treatment under various conditions. Results showed that microalgal-bacterial biofilms were successfully developed at a HRT of 9 h without external aeration, with a biofilm concentration of around 4690 mg/L being achieved in the steady-state. It was found that further increase of HRT to 12 h did not improve the overall accumulation of biofilm, whereas the growth of microalgae in biofilms was faster than bacteria in the initial stage, indicated by an increased chlorophyll-a&b content in biofilms. After which, the chlorophyll-a&b content in biofilms gradually stabilized at the level comparable with the seed, suggesting that there was a balanced distribution of microalgae and bacteria in biofilms. About 90% of TOC, 71.4% of total nitrogen and 72.6% of phosphorus were removed by microalgal-bacterial biofilms mainly through assimilation in the steady-state photoreactor run at the HRT of 12 h with external aeration. The community analysis further revealed that Cyanobacteria and Chloroflexi were the main components, while Chlorophyta appeared to be the dominant eukaryotic algal community in biofilms. This study could offer new insights into the development of microalgal-bacterial biofilms in a continuous-flow photoreactor for sustainable low-carbon municipal wastewater treatment.
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  • 文章类型: Journal Article
    在人工N管理中,低利用率的氮(N)输入增加导致大量反应性N(Nr)流,让地球处于高风险状态.在从废水中去除Nr期间或之后,必须回收和回收Nr,以减少N的输入,同时减轻Nr污染以解决N胁迫。然而,在Nr去除期间或之后有效恢复Nr的机制尚不清楚。这里,综述了近年来N风险的发生和废水处理的进展,以及当前从废水中回收N的技术面临的挑战。通过分析生物地球化学N循环网络中的N转化通量,通过光合和异养微生物进行的微生物氮同化被认为是在废水处理中协同去除和回收氮的有希望的替代方法。此外,讨论了通过微生物同化从废水中回收Nr的前景和差距。
    The increased nitrogen (N) input with low utilization rate in artificial N management has led to massive reactive N (Nr) flows, putting the Earth in a high-risk state. It is essential to recover and recycle Nr during or after Nr removal from wastewater to reduce N input while simultaneously mitigate Nr pollution in addressing the N stress. However, mechanisms for efficient Nr recovery during or after Nr removal remain unclear. Here, the occurrence of N risk and progress in wastewater treatment in recent years as well as challenges of the current technologies for N recovery from wastewater were reviewed. Through analyzing N conversion fluxes in biogeochemical N-cycling networks, microbial N assimilation through photosynthetic and heterotrophic microorganisms was highlighted as promising alternative for synergistic N removal and recovery in wastewater treatment. In addition, the prospects and gaps of Nr recovery from wastewater through microbial assimilation are discussed.
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  • 文章类型: Journal Article
    稳定氮同位素(δ15N)的自然丰度为陆地生态系统的氮动态提供了见解,确定其被认为是更好地了解生态系统N循环的有效方法。然而,目前,关于山区生态系统中叶面土壤δ15N变化的模式和机制的信息很少。在这项研究中,我们研究了横断山叶面土壤δ15N的决定因素与沿海拔梯度的N迁移速率有关。尽管高固氮和矿化产生的有效氮含量相对较高,我们在3500ma.s.l.,反映了中高海拔地区较强的植被氮素限制。增强的植被氮限制是由较高的微生物固定化和固有的植物动态的综合作用驱动的(δ15N在植被偏好中的变化,包括植被群落),沿海拔梯度气候变化。出乎意料的是,我们确定,土壤δ15N的特征是起伏的上升和与叶面δ15N的非耦合相关性随着海拔的增加,从而表明凋落物输入可能不是土壤δ15N的突出驱动因素。相反,发现土壤硝化和反硝化对沿海拔梯度的土壤δ15N的模式有更明显的贡献。总的来说,我们的结果有助于强调微生物固定在土壤氮动力学中的重要性,并提供新颖的见解,这将有助于增强我们对叶面土壤δ15N沿海拔梯度指示的氮循环的理解。
    The natural abundance of stable nitrogen isotopes (δ15 N) provides insights into the N dynamics of terrestrial ecosystems, the determination of which is considered an effective approach for gaining a better understanding ecosystem N cycling. However, there is currently little information available regarding the patterns and mechanisms underlying the variation in foliar-soil δ15 N among mountain ecosystems. In this study, we examined the determinants of foliar-soil δ15 N in association with N transportation rates along an elevational gradient in the Hengduan Mountains. Despite the relatively high levels of available N produced from high N fixation and mineralization, we detected the lowest levels of foliar δ15 N at 3500 m a.s.l., reflecting the stronger vegetation N limitation at medium high elevations. The enhanced vegetation N limitation was driven by the combined effects of higher microbial immobilization and inherent plant dynamic (the shifts of δ15 N in vegetation preference, including vegetation community) with changing climate along the elevational gradient. Unexpectedly, we established that soil δ15 N was characterized by an undulating rise and uncoupled correlation with foliar δ15 N with increasing elevation, thereby indicating that litter input might not be a prominent driver of soil δ15 N. Conversely, soil nitrification and denitrification were found to make a more pronounced contribution to the pattern of soil δ15 N along the elevational gradient. Collectively, our results serve to highlight the importance of microbial immobilization in soil N dynamics and provide novel insights that will contribute to enhancing our understanding of N cycling as indicated by foliar-soil δ15 N along elevational gradients.
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  • 文章类型: Journal Article
    The ever-increasing production and use of polyvinyl alcohol (PVA) threaten our environment. Yet PVA can be assimilated by microbes in two steps: oxidation and cleavage. Here we report novel α/β-hydrolase structures of oxidized PVA hydrolase (OPH) from two known PVA-degrading organisms, Sphingopyxis sp. 113P3 and Pseudomonas sp. VM15C, including complexes with substrate analogues, acetylacetone and caprylate. The active site is covered by a lid-like β-ribbon. Unlike other esterase and amidase, OPH is unique in cleaving the CC bond of β-diketone, although it has a catalytic triad similar to that of most α/β-hydrolases. Analysis of the crystal structures suggests a double-oxyanion-hole mechanism, previously only found in thiolase cleaving β-ketoacyl-CoA. Three mutations in the lid region showed enhanced activity, with potential in industrial applications.
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  • 文章类型: Letter
    A mechanistic understanding of microbial assimilation of soil organic carbon is important to improve Earth system models\' ability to simulate carbon-climate feedbacks. A simple modelling framework was developed to investigate how substrate quality and environmental controls over microbial activity regulate microbial assimilation of soil organic carbon and on the size of the microbial biomass. Substrate quality has a positive effect on microbial assimilation of soil organic carbon: higher substrate quality leads to higher ratio of microbial carbon to soil organic carbon. Microbial biomass carbon peaks and then declines as cumulative activity increases. The simulated ratios of soil microbial biomass to soil organic carbon are reasonably consistent with a recently compiled global data set at the biome level. The modelling framework developed in this study offers a simple approach to incorporate microbial contributions to the carbon cycling into Earth system models to simulate carbon-climate feedbacks and explain global patterns of microbial biomass.
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