MC, Monte Carlo

  • 文章类型: Journal Article
    在包括Brugada综合征在内的各种心律失常患者中鉴定出SCN5A基因的遗传变异。尽管过去几十年在研究心律失常相关SCN5A突变的分子机制方面取得了重大进展,对遗传学之间关系的理解,电生理后果和临床表型缺乏。我们在Brugada综合征(BrS)男性患者的SCN5A编码的钠通道Nav1.5中发现了一种新的遗传变异体Y739D。该研究的目的是表征Nav1.5-Y739D的生物物理特性,并提供在患者中观察到的表型的可能解释。WT和Y739D通道在HEK-293T细胞中异源表达,并记录全细胞钠电流。替代Y739D在-20mV时将钠电流密度降低了47±2%,正移位的电压依赖性激活,加速了快速和缓慢的失活,并从缓慢失活中减速恢复。Y739D功能丧失表型可能导致BrS表现。在hNav1.5同源性模型中,基于大鼠Nav1.5通道的低温EM结构,细胞外环IIS1-S2中的Y739与K1381和E1435形成H-键,并且π-阳离子与K1397接触(全部在环IIIS5-P1中)。相比之下,Y739D接受K1397和Y1434的H债券。Y739和Y739D与环IIIS5-P1的实质上不同的接触将不同地将变构信号从VSD-II传输到螺旋IIIS5的N端的快速失活栅极和螺旋IIIP1的C端的慢速失活栅极。这可能是Y739D通道功能障碍的原子机制的基础。
    Genetic variants in SCN5A gene were identified in patients with various arrhythmogenic conditions including Brugada syndrome. Despite significant progress of last decades in studying the molecular mechanism of arrhythmia-associated SCN5A mutations, the understanding of relationship between genetics, electrophysiological consequences and clinical phenotype is lacking. We have found a novel genetic variant Y739D in the SCN5A-encoded sodium channel Nav1.5 of a male patient with Brugada syndrome (BrS). The objective of the study was to characterize the biophysical properties of Nav1.5-Y739D and provide possible explanation of the phenotype observed in the patient. The WT and Y739D channels were heterologously expressed in the HEK-293T cells and the whole-cell sodium currents were recorded. Substitution Y739D reduced the sodium current density by 47 ± 2% at -20 mV, positively shifted voltage-dependent activation, accelerated both fast and slow inactivation, and decelerated recovery from the slow inactivation. The Y739D loss-of-function phenotype likely causes the BrS manifestation. In the hNav1.5 homology models, which are based on the cryo-EM structure of rat Nav1.5 channel, Y739 in the extracellular loop IIS1-S2 forms H-bonds with K1381 and E1435 and pi-cation contacts with K1397 (all in loop IIIS5-P1). In contrast, Y739D accepts H-bonds from K1397 and Y1434. Substantially different contacts of Y739 and Y739D with loop IIIS5-P1 would differently transmit allosteric signals from VSD-II to the fast-inactivation gate at the N-end of helix IIIS5 and slow-inactivation gate at the C-end of helix IIIP1. This may underlie the atomic mechanism of the Y739D channel dysfunction.
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  • 文章类型: Journal Article
    目的:图像引导放射治疗(IGRT)涉及频繁的室内成像会话,有助于额外的患者照射。本工作提供了与不同成像协议和解剖部位相关的患者特异性剂量测定数据。
    方法:我们开发了一种基于蒙特卡洛的软件,能够为提供kV-CBCT(Elekta和Varianlinacs)的五种成像设备计算3D个性化剂量分布。来自BrainLab和Accuray的MV-CT(断层治疗机)和2D-kV立体图像。我们的研究报告了骨盆计算的剂量分布,基于多个危险器官的剂量体积直方图的头颈部和乳房病例。
    结果:2D-kV成像提供了每个图像对小于1mGy的最小剂量。对于单个kV-CBCT和MV-CT,骨盆对器官的中位剂量分别约为30mGy和15mGy,头部和颈部约7mGy和10mGy,乳房约5mGy和15mGy。虽然MV-CT剂量随组织变化稀疏,kV成像的剂量在骨骼中比在软组织中高约1.7倍。每天进行40次前列腺放疗的kV-CBCT,股骨头最高可达3.5Gy。在每天成像的情况下,每个器官的头颈部和乳房的剂量水平似乎低于0.4Gy。
    结论:本研究显示了IGRT程序的剂量学影响。因此,采集参数应根据临床目的进行明智选择,并根据形态学进行调整。的确,成像剂量可以减少到10倍与优化方案。
    OBJECTIVE: Image-guided radiotherapy (IGRT) involves frequent in-room imaging sessions contributing to additional patient irradiation. The present work provided patient-specific dosimetric data related to different imaging protocols and anatomical sites.
    METHODS: We developed a Monte Carlo based software able to calculate 3D personalized dose distributions for five imaging devices delivering kV-CBCT (Elekta and Varian linacs), MV-CT (Tomotherapy machines) and 2D-kV stereoscopic images from BrainLab and Accuray. Our study reported the dose distributions calculated for pelvis, head and neck and breast cases based on dose volume histograms for several organs at risk.
    RESULTS: 2D-kV imaging provided the minimum dose with less than 1 mGy per image pair. For a single kV-CBCT and MV-CT, median dose to organs were respectively around 30 mGy and 15 mGy for the pelvis, around 7 mGy and 10 mGy for the head and neck and around 5 mGy and 15 mGy for the breast. While MV-CT dose varied sparsely with tissues, dose from kV imaging was around 1.7 times higher in bones than in soft tissue. Daily kV-CBCT along 40 sessions of prostate radiotherapy delivered up to 3.5 Gy to the femoral heads. The dose level for head and neck and breast appeared to be lower than 0.4 Gy for every organ in case of a daily imaging session.
    CONCLUSIONS: This study showed the dosimetric impact of IGRT procedures. Acquisition parameters should therefore be chosen wisely depending on the clinical purposes and tailored to morphology. Indeed, imaging dose could be reduced up to a factor 10 with optimized protocols.
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  • 文章类型: Journal Article
    目的:使用蒙特卡罗(MC)结合体素模型分析(125)I前列腺植入物的剂量分布和等效均匀剂量(EUD)中的组织异质性效应。
    背景:低剂量率近距离放射治疗中的剂量分布计算是基于水模中单个源周围的剂量沉积。这种形式主义没有考虑到组织的异质性,种子间衰减,或有限的患者尺寸的影响。由于光电效应,组织组成尤为重要。
    方法:使用两名前列腺癌患者的计算机断层摄影(CT)来创建用于MC模拟的体素模型。将元素组成和密度分配给每个结构。前列腺的密度,囊泡,通过100例患者的CT电子密度确定直肠和膀胱。考虑到与纯水相同的体模,进行相同的模拟。通过前列腺和直肠的剂量-体积直方图和EUD比较结果。
    结果:前列腺的平均吸收剂量偏差为3.3-4.0%,直肠的平均吸收剂量偏差为2.3-4.9%。当比较水中的计算与异质体模中的计算时。在水中的计算中,前列腺D90被高估2.8-3.9%,直肠D0.1cc导致6-8%的剂量差异.EUD导致前列腺的高估为3.5-3.7%,直肠的高估为7.7-8.3%。
    结论:对于水中的模拟,沉积剂量始终被高估。为了提高确定剂量分布的准确性,尤其是在直肠周围,建议引入基于模型的算法。
    OBJECTIVE: To use Monte Carlo (MC) together with voxel phantoms to analyze the tissue heterogeneity effect in the dose distributions and equivalent uniform dose (EUD) for (125)I prostate implants.
    BACKGROUND: Dose distribution calculations in low dose-rate brachytherapy are based on the dose deposition around a single source in a water phantom. This formalism does not take into account tissue heterogeneities, interseed attenuation, or finite patient dimensions effects. Tissue composition is especially important due to the photoelectric effect.
    METHODS: The computed tomographies (CT) of two patients with prostate cancer were used to create voxel phantoms for the MC simulations. An elemental composition and density were assigned to each structure. Densities of the prostate, vesicles, rectum and bladder were determined through the CT electronic densities of 100 patients. The same simulations were performed considering the same phantom as pure water. Results were compared via dose-volume histograms and EUD for the prostate and rectum.
    RESULTS: The mean absorbed doses presented deviations of 3.3-4.0% for the prostate and of 2.3-4.9% for the rectum, when comparing calculations in water with calculations in the heterogeneous phantom. In the calculations in water, the prostate D 90 was overestimated by 2.8-3.9% and the rectum D 0.1cc resulted in dose differences of 6-8%. The EUD resulted in an overestimation of 3.5-3.7% for the prostate and of 7.7-8.3% for the rectum.
    CONCLUSIONS: The deposited dose was consistently overestimated for the simulation in water. In order to increase the accuracy in the determination of dose distributions, especially around the rectum, the introduction of the model-based algorithms is recommended.
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