Lim Kinases

Lim 激酶
  • 文章类型: Journal Article
    肌动蛋白动力学在T细胞活化期间控制早期T细胞受体(TCR)信号传导。然而,最初的肌动蛋白重排的精确调节尚不完全清楚。这里,我们研究了磷酸酶Slingshot-1(SSH1)在此过程中的调节作用。我们的数据表明,SSH1迅速极化为新生的同源突触接触,然后重新定位为在成熟的免疫突触中组织的外周F-肌动蛋白网络。通过CRISPR/Cas9介导的基因组编辑或小干扰RNA敲低SSH1表达揭示了SSH1在CD3ε构象变化中的调节作用。允许Nck结合和适当的下游信号和免疫突触组织。TCR触发通过Limk-1失活介导的机制诱导SSH1介导的肌动蛋白动力学激活。这些数据表明,在早期TCR激活期间,SSH1对于介导TCR初始构象变化的快速F-肌动蛋白重排是必需的,整合素组织和近端信号事件,以实现适当的突触组织。因此,SSH1和Limk-1轴是全T细胞活化的关键调控元件。
    Actin dynamics control early T-cell receptor (TCR) signalling during T-cell activation. However, the precise regulation of initial actin rearrangements is not completely understood. Here, we have investigated the regulatory role of the phosphatase Slingshot-1 (SSH1) in this process. Our data show that SSH1 rapidly polarises to nascent cognate synaptic contacts and later relocalises to peripheral F-actin networks organised at the mature immunological synapse. Knockdown of SSH1 expression by CRISPR/Cas9-mediated genome editing or small interfering RNA reveal a regulatory role for SSH1 in CD3ε conformational change, allowing Nck binding and proper downstream signalling and immunological synapse organisation. TCR triggering induces SSH1-mediated activation of actin dynamics through a mechanism mediated by Limk-1 inactivation. These data suggest that during early TCR activation, SSH1 is required for rapid F-actin rearrangements that mediate initial conformational changes of the TCR, integrin organisation and proximal signalling events for proper synapse organisation. Therefore, the SSH1 and Limk-1 axis is a key regulatory element for full T cell activation.
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  • 文章类型: Journal Article
    细胞的细胞骨架不断暴露于调节细胞功能的物理力。LIM(Lin-11,Isl-1和Mec-3)结构域蛋白质家族的选定成员沿受力肌动蛋白纤维积累,有证据支持LIM域完全负责这种力诱导的相互作用。然而,LIM域的力诱导相互作用不限于肌动蛋白。LIMK1和LMO1,都只包含两个串联的LIM域,被募集到上皮细胞中的强力角蛋白纤维。这种独特的募集由它们的LIM结构域介导并由LIM结构域外的序列调节。基于这种相互作用的体外重建,LIMK1和LMO1直接与拉伸的角蛋白8/18纤维相互作用。这些结果表明,LIM结构域的机械感应能力扩展到角蛋白细胞骨架,强调LIM蛋白在力调节信号中的不同作用。
    The cytoskeleton of the cell is constantly exposed to physical forces that regulate cellular functions. Selected members of the LIM (Lin-11, Isl-1, and Mec-3) domain-containing protein family accumulate along force-bearing actin fibers, with evidence supporting that the LIM domain is solely responsible for this force-induced interaction. However, LIM domain\'s force-induced interactions are not limited to actin. LIMK1 and LMO1, both containing only two tandem LIM domains, are recruited to force-bearing keratin fibers in epithelial cells. This unique recruitment is mediated by their LIM domains and regulated by the sequences outside the LIM domains. Based on in vitro reconstitution of this interaction, LIMK1 and LMO1 directly interact with stretched keratin 8/18 fibers. These results show that LIM domain\'s mechano-sensing abilities extend to the keratin cytoskeleton, highlighting the diverse role of LIM proteins in force-regulated signaling.
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  • 文章类型: Journal Article
    目的:在本研究中,我们研究了LIMK1在宫颈癌进展中的作用机制.
    方法:LIMK1在调节生长中的生物学作用,入侵,在SiHa研究了宫颈癌的转移,CaSki细胞和裸鼠肿瘤模型。HE染色评价LIMK1在宫颈癌生长中的作用。LIMK1在入侵中的作用,转移,通过细胞划痕评估宫颈癌的增殖,Transwell,和单克隆实验。LIMK1、ROS、和Src通过Western印迹评价。通过细胞功能试验评价了调节ROS和p-Src表达对LIMK1在宫颈癌细胞迁移/侵袭和增殖中的作用。
    结果:LIMK1过表达促进裸鼠肿瘤生长。细胞划痕,Transwell,单克隆实验表明LIMK1促进了入侵,转移,和宫颈癌细胞的增殖。Westernblotting提示LIMK1可促进ROS相关蛋白NOX2、NOX4、p-Src、和下游蛋白p-FAK,p-ROCK1/2、p-Cofilin-1、F-肌动蛋白和抑制p-SHP2蛋白的表达。校正实验表明,LIMK1通过调节ROS和p-Src调节p-FAK和p-Cofilin-1蛋白的表达。通过检测宫颈癌细胞的功能,发现LIMK1诱导的ROS和p-Src的激活是促进迁移的早期事件,扩散,和宫颈癌细胞的侵袭。
    结论:LIMK1通过调节氧化应激/Src介导的p-FAK/p-ROCK1/2/p-Cofilin-1通路,促进F-actin的表达,促进宫颈癌的发生发展。
    OBJECTIVE: In this study, we investigated the mechanism of action of LIMK1 in cervical cancer progression.
    METHODS: The biological role of LIMK1 in regulating the growth, invasion, and metastasis of cervical cancer was studied in SiHa, CaSki cells and nude mice tumor models. The role of LIMK1 in the growth of cervical cancer was evaluated by HE staining. The role of LIMK1 in the invasion, metastasis, and proliferation of cervical cancer was evaluated by cell scratch, Transwell, and monoclonal experiments. The interaction among LIMK1, ROS, and Src was evaluated by Western blotting. The effects of regulating ROS and p-Src expression on LIMK1 in the migration/invasion and proliferation of cervical cancer cells were evaluated through cellular functional assays.
    RESULTS: Overexpression of LIMK1 promoted tumor growth in nude mice. Cell scratch, Transwell, and monoclonal experiments suggested that LIMK1 promoted the invasion, metastasis, and proliferation of cervical cancer cells. Western blotting suggested that LIMK1 can promote the expression of ROS-related proteins NOX2, NOX4, p-Src, and downstream proteins p-FAK, p-ROCK1/2, p-Cofilin-1, F-actin and inhibit the expression of p-SHP2 protein. Correction experiments showed that LIMK1 regulated the expression of p-FAK and p-Cofilin-1 proteins by regulating ROS and p-Src. Through the detection of cervical cancer cell functions, it was found that the activation of ROS and p-Src induced by LIMK1 is an early event that promotes the migration, proliferation, and invasion of cervical cancer cells.
    CONCLUSIONS: LIMK1 promotes the expression of F-actin and promotes the development of cervical cancer by regulating the oxidative stress/Src-mediated p-FAK/p-ROCK1/2/p-Cofilin-1 pathway.
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  • 文章类型: Journal Article
    狂犬病病毒(RABV)是高度致命的,并引发严重的神经系统症状。神经致病机制仍然知之甚少。Ras相关的C3肉毒杆菌毒素底物1(Rac1)是一种参与肌动蛋白重塑的Rho-GTP酶,据报道与神经元功能障碍密切相关。在这项研究中,通过药物抑制剂的组合,小干扰RNA,和特定的显性阴性,我们描述了动态肌动蛋白的关键作用和Rac1在RABV感染中的调节功能,主要在病毒进入阶段。数据显示RABV磷蛋白与Rac1相互作用。RABV磷蛋白抑制Rac1活性并阻碍下游Pak1-Limk1-Cofilin1信号传导,导致基于F-肌动蛋白的结构形成的破坏。在早期病毒感染中,EGFR-Rac1信号通路经历了双相变化,首先上调,然后下调,对应于RABV进入诱导的F-肌动蛋白重塑模式。一起来看,我们的研究结果首次证明了Rac1信号通路在RABV感染中的作用,并可能为狂犬病神经发病机制的病因解释提供了线索.重要性尽管致命性狂犬病中神经元功能障碍占主导地位,狂犬病病毒(RABV)感染引起神经系统症状的详细机制仍存在疑问。肌动蛋白细胞骨架参与许多病毒感染,在维持神经功能中起着至关重要的作用。细胞骨架破坏与异常神经症状密切相关,并诱发神经源性疾病。在这项研究中,我们表明RABV感染导致细胞骨架的重排以及Rac1信号转导的双相动力学。这些结果有助于阐明通过RABV感染引起异常神经元过程的机制,并可能阐明旨在改善神经系统疾病的治疗发展。
    Rabies virus (RABV) is highly lethal and triggers severe neurological symptoms. The neuropathogenic mechanism remains poorly understood. Ras-related C3 botulinum toxin substrate 1 (Rac1) is a Rho-GTPase that is involved in actin remodeling and has been reported to be closely associated with neuronal dysfunction. In this study, by means of a combination of pharmacological inhibitors, small interfering RNA, and specific dominant-negatives, we characterize the crucial roles of dynamic actin and the regulatory function of Rac1 in RABV infection, dominantly in the viral entry phase. The data show that the RABV phosphoprotein interacts with Rac1. RABV phosphoprotein suppress Rac1 activity and impedes downstream Pak1-Limk1-Cofilin1 signaling, leading to the disruption of F-actin-based structure formation. In early viral infection, the EGFR-Rac1-signaling pathway undergoes a biphasic change, which is first upregulated and subsequently downregulated, corresponding to the RABV entry-induced remodeling pattern of F-actin. Taken together, our findings demonstrate for the first time the role played by the Rac1 signaling pathway in RABV infection and may provide a clue for an explanation for the etiology of rabies neurological pathogenesis.IMPORTANCEThough neuronal dysfunction is predominant in fatal rabies, the detailed mechanism by which rabies virus (RABV) infection causes neurological symptoms remains in question. The actin cytoskeleton is involved in numerous viruses infection and plays a crucial role in maintaining neurological function. The cytoskeletal disruption is closely associated with abnormal nervous symptoms and induces neurogenic diseases. In this study, we show that RABV infection led to the rearrangement of the cytoskeleton as well as the biphasic kinetics of the Rac1 signal transduction. These results help elucidate the mechanism that causes the aberrant neuronal processes by RABV infection and may shed light on therapeutic development aimed at ameliorating neurological disorders.
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  • 文章类型: Journal Article
    LIM激酶,LIMK1和LIMK2已成为开发抑制剂的有希望的靶标,具有治疗几种主要疾病的潜在应用。LIMKs作为Rho-GTP酶家族小G蛋白的下游效应子,在细胞骨架重塑中起着至关重要的作用,作为cofilin的主要监管机构,肌动蛋白解聚因子。在这篇文章中,我们描述了这个概念,合成,新型四氢吡啶吡咯并嘧啶LIMK抑制剂的生物学评价。首先构建同源性模型以更好地理解我们的初步化合物的结合模式并解释生物活性的差异。产生超过60种产物的文库,并在中至低纳摩尔范围内测量体外酶活性。然后在细胞中评估最有前途的衍生物对cofilin磷酸化抑制的影响,从而鉴定出52种在激酶选择性组中对LIMK表现出优异的选择性。我们还证明了52通过干扰肌动蛋白丝来影响细胞骨架。使用三种不同细胞系对该衍生物进行的细胞迁移研究显示出对细胞运动性的显着影响。最后,与52复合的LIMK2激酶结构域的晶体结构得到解决,大大提高了我们对52和LIMK2活性位点之间相互作用的理解。报道的数据代表了开发更有效的LIMK抑制剂用于未来体内临床前验证的基础。
    LIM Kinases, LIMK1 and LIMK2, have become promising targets for the development of inhibitors with potential application for the treatment of several major diseases. LIMKs play crucial roles in cytoskeleton remodeling as downstream effectors of small G proteins of the Rho-GTPase family, and as major regulators of cofilin, an actin depolymerizing factor. In this article we describe the conception, synthesis, and biological evaluation of novel tetrahydropyridine pyrrolopyrimidine LIMK inhibitors. Homology models were first constructed to better understand the binding mode of our preliminary compounds and to explain differences in biological activity. A library of over 60 products was generated and in vitro enzymatic activities were measured in the mid to low nanomolar range. The most promising derivatives were then evaluated in cell on cofilin phosphorylation inhibition which led to the identification of 52 which showed excellent selectivity for LIMKs in a kinase selectivity panel. We also demonstrated that 52 affected the cell cytoskeleton by disturbing actin filaments. Cell migration studies with this derivative using three different cell lines displayed a significant effect on cell motility. Finally, the crystal structure of the kinase domain of LIMK2 complexed with 52 was solved, greatly improving our understanding of the interaction between 52 and LIMK2 active site. The reported data represent a basis for the development of more efficient LIMK inhibitors for future in vivo preclinical validation.
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  • 文章类型: Journal Article
    求偶抑制是果蝇的行为适应。当苍蝇种群中的大多数雌性受精并且不接受交配时,一个男性,在一系列失败的尝试之后,减少对所有女性的求爱活动,节约能源和生殖资源。求偶时间的减少取决于不成功求偶的持续时间和男性神经系统的遗传决定特征。因此,求偶抑制范式可用于研究学习和记忆的分子机制。p-Cofilin,肌动蛋白重塑信号级联的组成部分和LIM激酶1(LIMK1)的产物,在嗅觉学习范式中调节果蝇的遗忘。以前,我们已经表明,limk1在特定类型的神经细胞中的抑制不同地影响苍蝇求偶记忆。这里,我们使用Gal4>UAS系统在相同类型的神经元中诱导limk1过表达。蘑菇体内的limk1激活,glia,与对照菌株或limk1敲低的菌株相比,毫无结果的神经元降低了学习指数。在胆碱能和多巴胺能/5-羟色胺能神经元中,limk1的过表达和敲低都会损害果蝇的短期记忆。因此,limk1活动的适当平衡对于果蝇的正常认知活动至关重要。
    Courtship suppression is a behavioral adaptation of the fruit fly. When majority of the females in a fly population are fertilized and non-receptive for mating, a male, after a series of failed attempts, decreases its courtship activity towards all females, saving its energy and reproductive resources. The time of courtship decrease depends on both duration of unsuccessful courtship and genetically determined features of the male nervous system. Thereby, courtship suppression paradigm can be used for studying molecular mechanisms of learning and memory. p-Cofilin, a component of the actin remodeling signaling cascade and product of LIM-kinase 1 (LIMK1), regulates Drosophila melanogaster forgetting in olfactory learning paradigm. Previously, we have shown that limk1 suppression in the specific types of nervous cells differently affects fly courtship memory. Here, we used Gal4 > UAS system to induce limk1 overexpression in the same types of neurons. limk1 activation in the mushroom body, glia, and fruitless neurons decreased learning index compared to the control strain or the strain with limk1 knockdown. In cholinergic and dopaminergic/serotoninergic neurons, both overexpression and knockdown of limk1 impaired Drosophila short-term memory. Thus, proper balance of the limk1 activity is crucial for normal cognitive activity of the fruit fly.
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  • 文章类型: Journal Article
    LIM结构域激酶2(LIMK2)是调节肌动蛋白和细胞骨架重组的72kDa蛋白。一旦被其上游活化剂(ROCK1)磷酸化,LIMK2可以磷酸化cofilin以使其失活。这减轻了肌动蛋白上的杠杆应力并允许发生聚合。肌动蛋白重排在调节细胞周期进程中至关重要,凋亡,和移民。据报道,ROCK1/LIMK2/cofilin通路的失调与各种实体癌(如乳腺癌)的发展有关。肺,前列腺癌和液体癌,比如白血病。这篇综述旨在评估来自多个体外报道的发现,在体内,以及LIMK2在不同人类癌症中的潜在肿瘤调节作用的临床研究。选定文献的发现揭示了激活AKT,EGF,和TGF-β途径可以上调ROCK1/LIMK2/cofilin途径的活性。除了cofilin,LIMK2可以调节其他蛋白质的细胞水平,如TPPP1,以促进微管聚合。肿瘤抑制蛋白p53可以激活LIMK2b,LIMK2的剪接变体,以诱导细胞周期停滞并允许DNA修复在细胞进入细胞周期的下一阶段之前发生。此外,几种非编码RNA,如miR-135a和miR-939-5p,还可以表观遗传调节LIMK2的表达。由于LIMK2的表达在几种人类癌症中失调,测量LIMK2的组织表达可能有助于诊断癌症和预测患者预后。由于LIMK2可以在癌症发展中发挥促进肿瘤和抑制肿瘤的作用,应进行更多的调查,以仔细评估在癌症患者中引入LIMK2抑制剂是否可以减缓癌症进展而不造成临床损害.
    LIM domains kinase 2 (LIMK2) is a 72 kDa protein that regulates actin and cytoskeleton reorganization. Once phosphorylated by its upstream activator (ROCK1), LIMK2 can phosphorylate cofilin to inactivate it. This relieves the levering stress on actin and allows polymerization to occur. Actin rearrangement is essential in regulating cell cycle progression, apoptosis, and migration. Dysregulation of the ROCK1/LIMK2/cofilin pathway has been reported to link to the development of various solid cancers such as breast, lung, and prostate cancer and liquid cancer like leukemia. This review aims to assess the findings from multiple reported in vitro, in vivo, and clinical studies on the potential tumour-regulatory role of LIMK2 in different human cancers. The findings of the selected literature unraveled that activated AKT, EGF, and TGF-β pathways can upregulate the activities of the ROCK1/LIMK2/cofilin pathway. Besides cofilin, LIMK2 can modulate the cellular levels of other proteins, such as TPPP1, to promote microtubule polymerization. The tumour suppressor protein p53 can transactivate LIMK2b, a splice variant of LIMK2, to induce cell cycle arrest and allow DNA repair to occur before the cell enters the next phase of the cell cycle. Additionally, several non-coding RNAs, such as miR-135a and miR-939-5p, could also epigenetically regulate the expression of LIMK2. Since the expression of LIMK2 is dysregulated in several human cancers, measuring the tissue expression of LIMK2 could potentially help diagnose cancer and predict patient prognosis. As LIMK2 could play tumour-promoting and tumour-inhibiting roles in cancer development, more investigation should be conducted to carefully evaluate whether introducing a LIMK2 inhibitor in cancer patients could slow cancer progression without posing clinical harms.
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  • 文章类型: Journal Article
    Cofilin家族蛋白在通过丝状肌动蛋白解聚和切断重塑细胞骨架中具有重要作用。短,cofilin的非结构化N末端区域对于肌动蛋白结合至关重要,并且具有抑制磷酸化的主要位点。对于无序的序列,N端区域高度保守,但是推动这种保护的具体方面尚不清楚。这里,我们筛选了16,000个人类cofilinN-末端序列变体的文库,在存在或不存在上游调节因子LIM激酶的情况下,它们支持酿酒酵母生长的能力。来自单个变体的筛选和生化分析的结果揭示了LIM激酶对肌动蛋白结合和调节的不同序列要求。LIM激酶识别仅部分解释了对磷酸调节的序列限制,相反,这在很大程度上是由磷酸化使cofilin失活的能力驱动的。我们发现肌动蛋白结合和磷酸抑制的松散序列要求,但总的来说,它们将N端限制在天然cofilin中发现的序列。我们的结果说明了磷酸化位点如何平衡功能和调节的潜在竞争序列要求。
    Cofilin family proteins have essential roles in remodeling the cytoskeleton through filamentous actin depolymerization and severing. The short, unstructured N-terminal region of cofilin is critical for actin binding and harbors the major site of inhibitory phosphorylation. Atypically for a disordered sequence, the N-terminal region is highly conserved, but specific aspects driving this conservation are unclear. Here, we screen a library of 16,000 human cofilin N-terminal sequence variants for their capacity to support growth in S. cerevisiae in the presence or absence of the upstream regulator LIM kinase. Results from the screen and biochemical analysis of individual variants reveal distinct sequence requirements for actin binding and regulation by LIM kinase. LIM kinase recognition only partly explains sequence constraints on phosphoregulation, which are instead driven to a large extent by the capacity for phosphorylation to inactivate cofilin. We find loose sequence requirements for actin binding and phosphoinhibition, but collectively they restrict the N-terminus to sequences found in natural cofilins. Our results illustrate how a phosphorylation site can balance potentially competing sequence requirements for function and regulation.
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  • 文章类型: Journal Article
    目的:探讨围产期壬基酚(NP)暴露是否会引起子代大鼠成年期心肌纤维化(MF),并探讨TGF-β1/LIMK1信号通路在NP诱导的心肌成纤维细胞(CFs)纤维化中的作用。
    结果:组织病理学显示,与空白组相比,NP和盐酸异丙肾上腺素(ISO)组的胶原沉积增加,纤维排列改变。收缩和舒张功能受损。Western印迹和qRT-PCR表明,中枢肌纤维化相关蛋白(胶原蛋白I和ΙΙΙ,MMP2,MMP9,TGF-β1,α-SMA,IL-1β,和TGF-β1)和基因(胶原蛋白,胶原蛋白III,与空白组相比,NP和ISO组的TGF-β1和α-SMAmRNA)上调。mRNA-seq分析表明TGF-β1信号通路相关基因和蛋白的差异表达。在用重组人TGF-β1和NP刺激的CFs中纤维化相关蛋白和基因表达增加,这与动物实验的结果一致。根据免疫荧光分析和免疫印迹,NP暴露激活了TGF-β1/LIMK1信号通路,其在NP诱导的CFs中的作用机制使用LIMK1抑制剂(BMS-5)进一步验证。该抑制剂调节了TGF-β1/LIMK1信号通路,并抑制了NP诱导的CFs中纤维化相关蛋白表达的增加。因此,上述途径涉及NP诱导的纤维化。
    结论:我们在此提供了第一个证据,证明围产期NP暴露会导致成年雄性幼鼠心肌纤维化,并揭示了TGF-β1/LIMK1信号通路在这一过程中的分子机制和功能作用。
    OBJECTIVE: We here explored whether perinatal nonylphenol (NP) exposure causes myocardial fibrosis (MF) during adulthood in offspring rats and determined the role of the TGF-β1/LIMK1 signaling pathway in NP-induced fibrosis in cardiac fibroblasts (CFs).
    RESULTS: Histopathology revealed increased collagen deposition and altered fiber arrangement in the NP and isoproterenol hydrochloride (ISO) groups compared with the blank group. Systolic and diastolic functions were impaired. Western blotting and qRT-PCR demonstrated that the expression of central myofibrosis-related proteins (collagens Ι and ΙΙΙ, MMP2, MMP9, TGF-β1, α-SMA, IL-1β, and TGF-β1) and genes (Collagen Ι, Collagen ΙΙΙ, TGF-β1, and α-SMA mRNA) was upregulated in the NP and ISO groups compared with the blank group. The mRNA-seq analysis indicated differential expression of TGF-β1 signaling pathway-associated genes and proteins. Fibrosis-related protein and gene expression increased in the CFs stimulated with the recombinant human TGF-β1 and NP, which was consistent with the results of animal experiments. According to the immunofluorescence analysis and western blotting, NP exposure activated the TGF-β1/LIMK1 signaling pathway whose action mechanism in NP-induced CFs was further validated using the LIMK1 inhibitor (BMS-5). The inhibitor modulated the TGF-β1/LIMK1 signaling pathway and suppressed the NP-induced increase in fibrosis-related protein expression in the CFs. Thus, the aforementioned pathway is involved in NP-induced fibrosis.
    CONCLUSIONS: We here provide the first evidence that perinatal NP exposure causes myocardial fibrosis in growing male rat pups and reveal the molecular mechanism and functional role of the TGF-β1/LIMK1 signaling pathway in this process.
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  • 文章类型: Journal Article
    有丝分裂突变(MC)是一种新型的细胞死亡形式,在结肠腺癌(COAD)的治疗和耐药性中起着重要作用。然而,MC相干基因在COAD医治和预后评价中的研讨较少。在这项研究中,转录组数据,体细胞突变和拷贝数变异数据来自癌症基因组图谱(TCGA)数据库。有丝分裂突变相关基因(MCRGs)来自GENCARDS网站。用LIMMA包进行差异基因分析。单变量Cox回归分析用于鉴定预后相关基因。通过maftools软件包进行突变分析并显示。RCircos包用于定位基因在染色体上的位置。应用“Glmnet”R包通过LASSO回归方法构建风险模型。对不同亚型进行了聚类的一致性聚类分析。通过基因本体论(GO)和京都基因和基因组百科全书(KEGG)方法进行功能富集分析,通过单样本基因集富集分析(ssGSEA)进行免疫浸润分析,还通过pRropheticR包进行了肿瘤突变负荷和药物敏感性分析,以评估风险模型或分子亚型。此外,hub基因表达与总生存期(OS)之间的联系来自在线人类蛋白质图谱(HPA)网站。实时定量聚合酶链反应(RT‑qPCR)进一步验证了hub基因的表达。在TCGA队列中总共选择了207个差异表达的MCRG,其中23例与COAD患者的OS显著相关。随后,我们用5个中心MCRGs构建了风险评分预后模型,包括SYCE2、SERPINE1、TRIP6、LIMK1和EEPD1。高危患者预后较差。此外,我们开发了一个聚集年龄的列线图,性别,分期,和风险评分来准确预测1年、3年和5年的临床生存结果。功能富集的结果表明,MCRGs特征与癌症进展之间存在显着相关性。对免疫微环境具有重要意义。此外,显示高TMB和高风险评分的患者预后较差,风险特征与不同化疗药物相关。最后,RT-qPCR验证了临床样品中5种MCRGs的表达增加。预后特征中的五个MCRG与预后相关,并且可以作为具有不同临床病理特征的COAD患者的可靠预后生物标志物和治疗靶标,从而为相关药物在COAD患者中的精准应用提供了基础。
    Mitotic catastrophe (MC) is a novel form of cell death that plays an important role in the treatment and drug resistance of colon adenocarcinoma (COAD). However, MC related genes in COAD treatment and prognosis evaluation are rarely studied. In this study, the transcriptome data, somatic mutation and copy number variation data were obtained from The Cancer Genome Atlas (TCGA) database. The mitotic catastrophe related genes (MCRGs) were obtained from GENCARDS website. Differential gene analysis was conducted with LIMMA package. Univariate Cox regression analysis was used to identify prognostic related genes. Mutation analysis was performed and displayed by maftools package. RCircos package was used for localizing the position of genes on chromosomes. \"Glmnet\" R package was applied for constructing a risk model via the LASSO regression method. Consensus clustering analyses was implemented for clustering different subtypes. Functional enrichment analysis through Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) methods, immune infiltration analysis via single sample gene set enrichment analysis (ssGSEA), tumor mutation burden and drug sensitivity analysis by pRRophetic R package were also carried out for risk model or molecular subtype\'s assessment. Additionally, the connections between the expression of hub genes and overall survival (OS) were obtained from online Human Protein Atlas (HPA) website. Real-Time Quantitative Polymerase Chain Reaction (RT‑qPCR) further validated the expression of hub genes. A total of 207 differentially expressed MCRGs were selected in the TCGA cohort, 23 of which were significantly associated with OS in COAD patients. Subsequently, we constructed risk score prognostic models with 5 hub MCRGs, including SYCE2, SERPINE1, TRIP6, LIMK1, and EEPD1. The high-risk patients suffered from poorer prognosis. Furthermore, we developed a nomogram that gathered age, sex, staging, and risk score to accurately forecast the clinical survival outcomes in 1, 3, and 5 years. The results of functional enrichment suggested a significant correlation between MCRGs characteristics and cancer progression, with important implications for the immune microenvironment. Moreover, patients who displayed high TMB and high risk score showed worse prognosis, and risk characteristics were associated with different chemotherapeutic agents. Finally, RT‑qPCR verified the increased expression of the five MCRGs in clinical samples. The five MCRGs in the prognostic signature were associated with prognosis, and could be treated as reliable prognostic biomarkers and therapeutic targets for COAD patients with distinct clinicopathological characteristics, thereby providing a foundation for the precise application of pertinent drugs in COAD patients.
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