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  • 文章类型: Journal Article
    大脑解码是计算神经科学的一个领域,旨在从可测量的大脑活动中推断精神状态或感知输入的内部表示。在这项研究中,我们提出了一种依赖于语义和上下文相似性的大脑解码新方法。我们使用几个自然图像的fMRI数据集作为刺激,并创建一个深度学习解码管道,灵感来自人类视觉中的自下而上和自上而下的过程。

我们的管道包括一个线性大脑到特征模型,该模型将fMRI活动映射到语义视觉刺激特征。我们假设大脑将视觉信息投射到一个空间上,该空间与预先训练的神经网络的最后一层代表的潜在空间同源,它总结并强调了概念之间的异同。这些特征使用最近邻策略在潜在空间中进行分类,并将结果用于检索图像或调节生成潜在扩散模型以创建新图像。我们在三个不同的fMRI数据集上展示了语义分类和图像检索,上帝(视觉感知和想象力),BOLD5000和NSD。在所有情况下,fMRI和视觉刺激的深层语义表示之间的简单映射导致有意义的分类和检索或生成的图像。我们使用定量指标和人类评估实验来评估质量,该实验再现了人类用来评估图像相似性的多种有意识和无意识标准。我们的方法在超过80%的测试集中实现了正确的评估。 总之,我们的研究提出了一种依赖于语义和上下文相似性的大脑解码新方法。我们的结果表明,可测量的神经相关可以线性映射到神经网络的潜在空间上,以合成与原始内容匹配的图像。这些发现对认知神经科学和人工智能都有影响。
    Objective.Brain decoding is a field of computational neuroscience that aims to infer mental states or internal representations of perceptual inputs from measurable brain activity. This study proposes a novel approach to brain decoding that relies on semantic and contextual similarity.Approach.We use several functional magnetic resonance imaging (fMRI) datasets of natural images as stimuli and create a deep learning decoding pipeline inspired by the bottom-up and top-down processes in human vision. Our pipeline includes a linear brain-to-feature model that maps fMRI activity to semantic visual stimuli features. We assume that the brain projects visual information onto a space that is homeomorphic to the latent space of last layer of a pretrained neural network, which summarizes and highlights similarities and differences between concepts. These features are categorized in the latent space using a nearest-neighbor strategy, and the results are used to retrieve images or condition a generative latent diffusion model to create novel images.Main results.We demonstrate semantic classification and image retrieval on three different fMRI datasets: Generic Object Decoding (vision perception and imagination), BOLD5000, and NSD. In all cases, a simple mapping between fMRI and a deep semantic representation of the visual stimulus resulted in meaningful classification and retrieved or generated images. We assessed quality using quantitative metrics and a human evaluation experiment that reproduces the multiplicity of conscious and unconscious criteria that humans use to evaluate image similarity. Our method achieved correct evaluation in over 80% of the test set.Significance.Our study proposes a novel approach to brain decoding that relies on semantic and contextual similarity. The results demonstrate that measurable neural correlates can be linearly mapped onto the latent space of a neural network to synthesize images that match the original content. These findings have implications for both cognitive neuroscience and artificial intelligence.
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  • 文章类型: Journal Article
    对棘手的工业挑战的新见解可以通过根据自然科学对其进行框架来揭示。一个棘手的工业挑战是,创意生产可能比标准化生产在财务上更加昂贵和耗时。创意产品包括具有一个或多个原始特征的各种商品。高财务生产成本和长生产持续时间阻碍了创意生产的扩大。在本文中,创造性生产的框架是在从紧急语用到动作语义的过程中熵和复杂性之间的相互作用。提供了对熵与复杂性之间相互作用的分析,该分析将创造性生产的既定实践与不断变化的环境中的组织生存联系起来。本文的分析与组装理论有关,这是自然科学的最新理论发展,解决了如何从生物学中的选择中出现开放式生成复杂的物理对象。工业生产中的装配实践与自然科学中的装配理论之间的相似之处通过两者共同的构造来解释,如装配索引。总的来说,论文报告的分析表明,熵和复杂性之间的相互作用是创造性生产中棘手的挑战的基础,从单个产品的生产到公司的生存。
    New insights into intractable industrial challenges can be revealed by framing them in terms of natural science. One intractable industrial challenge is that creative production can be much more financially expensive and time consuming than standardized production. Creative products include a wide range of goods that have one or more original characteristics. The scaling up of creative production is hindered by high financial production costs and long production durations. In this paper, creative production is framed in terms of interactions between entropy and complexity during progressions from emergent pragmatics to action semantics. An analysis of interactions between entropy and complexity is provided that relates established practice in creative production to organizational survival in changing environments. The analysis in this paper is related to assembly theory, which is a recent theoretical development in natural science that addresses how open-ended generation of complex physical objects can emerge from selection in biology. Parallels between assembly practice in industrial production and assembly theory in natural science are explained through constructs that are common to both, such as assembly index. Overall, analyses reported in the paper reveal that interactions between entropy and complexity underlie intractable challenges in creative production, from the production of individual products to the survival of companies.
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  • 文章类型: Journal Article
    爱泼斯坦-巴尔病毒(EBV)是一种广泛存在的γ疱疹病毒,在病因上与良性和恶性疾病有关。由于EBV的致病机制尚未完全了解,了解EBV遗传多样性是一个持续的目标。因此,本工作描述了来自巴西东南部的70例EBV阳性病例中裂解基因BZLF1的遗传多样性。此外,连同先前表征的遗传区域,本研究的目的是确定可能影响EBV遗传多样性的病毒遗传因素的影响.因此,BZLF1的系统发育分析表明有两个具有高支持的主要进化枝,BZ-A和BZ-B(PP>0.85)。因此,BZ-A进化枝是与所研究的主要多态性相关的最多样化的进化枝,包括单倍型1+V3(p<0.001)。此外,BZLF1和癌基因LMP1之间的多基因系统发育分析(MLA)显示出特定的簇,揭示了单倍型分离,这两个基因先前的单基因系统发育未能证明。令人惊讶的是,LMP1与Raji相关的变异簇显示出更多的多样性,与BZ-A/B和2/1+V3单倍型相关。最后,由于Raji相关变异的高度单倍型多样性,在MLA定义的不同簇中评估了DNA重组诱导基序(DRIM)的数量.同样,单倍型BZ-A+Raji显示含有更多数量的DRIM(p<0.001)。这些结果引起了人们对巴西东南部EBV的高单倍型多样性的关注,并加强了通过LMP1癌基因对南美Raji相关变体的重组潜力的假设。
    Epstein-Barr virus (EBV) is a ubiquitous gammaherpesvirus etiologically associated with benign and malignant diseases. Since the pathogenic mechanisms of EBV are not fully understood, understanding EBV genetic diversity is an ongoing goal. Therefore, the present work describes the genetic diversity of the lytic gene BZLF1 in a sampling of 70 EBV-positive cases from southeastern Brazil. Additionally, together with the genetic regions previously characterized, the aim of the present study was to determine the impact of viral genetic factors that may influence EBV genetic diversity. Accordingly, the phylogenetic analysis of the BZLF1 indicated two main clades with high support, BZ-A and BZ-B (PP > 0.85). Thus, the BZ-A clade was the most diverse clade associated with the main polymorphisms investigated, including the haplotype Type 1 + V3 (p < 0.001). Furthermore, the multigene phylogenetic analysis (MLA) between BZLF1 and the oncogene LMP1 showed specific clusters, revealing haplotypic segregation that previous single-gene phylogenies from both genes failed to demonstrate. Surprisingly, the LMP1 Raji-related variant clusters were shown to be more diverse, associated with BZ-A/B and the Type 2/1 + V3 haplotypes. Finally, due to the high haplotypic diversity of the Raji-related variants, the number of DNA recombination-inducing motifs (DRIMs) was evaluated within the different clusters defined by the MLA. Similarly, the haplotype BZ-A + Raji was shown to harbor a greater number of DRIMs (p < 0.001). These results call attention to the high haplotype diversity of EBV in southeast Brazil and strengthen the hypothesis of the recombinant potential of South American Raji-related variants via the LMP1 oncogene.
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  • 文章类型: Journal Article
    滑膜肉瘤(SS)是一种恶性肿瘤,占所有软组织肉瘤的5-10%。SS具有鲜明的特点,例如,与其他软组织肉瘤相比,对年轻人的偏爱和相对缓慢的生长。一些SS患者在可触及的肿块发展之前在肿瘤部位经历长期疼痛。在这里,我们报道了一例39岁的上臂SS患者,疼痛超过20年。在17年的磁共振成像中检测到的肿瘤是SS。据我们所知,没有关于基于影像学研究的SS识别的英语报告,超过20年未确诊,在文献中已知。本报告讨论了这种潜在病变的影像学特征以及这种异常肿瘤的体积倍增时间。
    Synovial sarcoma (SS) is a malignant tumor comprising 5-10% of all soft tissue sarcomas. SS has distinct characteristics, such as a predilection for young adults and relatively slow growth compared to other soft tissue sarcomas. Some patients with SS experience long-standing pain at the tumor site before the development of a palpable mass. Herein, we report the case of a 39-year-old woman with SS in the upper arm who presented with pain for > 20 years. The tumor detected on magnetic resonance imaging at 17 years was an SS. To the best of our knowledge, no English-language reports on imaging study-based identification of SS, which was undiagnosed for > 20 years, are known in the literature. This report discusses the imaging features of this latent lesion and the volume-doubling time of this unusual tumor.
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  • 文章类型: Meta-Analysis
    目的:为了估计进展,在年龄<25岁诊断的儿童和青年中,临界和轻度潜伏性RHD的回归和持续率。
    方法:根据系统评价和荟萃分析指南的首选报告项目进行综述。在电子数据库中搜索潜在的RHD超声心动图随访研究,这些研究使用了世界心脏联合会的诊断标准。对临界和轻度疾病亚类的结局进行了荟萃分析。
    结果:纳入了来自12项研究的1618名个体的数据。对于临界情况,48.51%回归(95CI45.10-51.93),进步了13.99%(95CI9.72-18.25),38.61%的患者在随访时患有持续性(不变)疾病(95CI29.68-47.54)。对于轻度明确的病例,34.01%回归(95CI28.88-39.15),进展8.06%(95CI3.65-16.90),60.23%患有持续性疾病(95CI55.08-67.38)。
    结论:边缘和轻度确定的潜伏性RHD在初始诊断后显示出可变的演变。虽然8%的轻度明确病例和14%的临界病例在随访时有疾病进展的迹象,轻度明确病例的三分之一和临界病例的一半有疾病消退,即使有足够的抗生素预防。研究队列之间的显着差异表明,潜在的RHD自然史可能在全球不同的流行地区之间存在差异。需要未来的研究来确定那些将最受益于抗生素预防的个体,并确定潜在RHD的区域自然史。
    OBJECTIVE: To estimate progression, regression and persistence rates for borderline and mild-definite latent RHD in children and youth diagnosed at age < 25 years.
    METHODS: A review was conducted in accordance with Preferred Reporting Items for Systematic reviews and Meta-Analysis guidelines. Electronic databases were searched for latent RHD echocardiography follow-up studies which used World Heart Federation diagnostic criteria. A meta-analysis of outcomes was conducted for borderline and mild-definite disease subcategories.
    RESULTS: Data for 1618 individuals from 12 studies were included. For borderline cases, 48.51% regressed (95%CI 45.10-51.93), 13.99% progressed (95%CI 9.72-18.25), and 38.61% had persistent (unchanged) disease at follow-up (95%CI 29.68-47.54). For mild-definite cases, 34.01% regressed (95%CI 28.88-39.15), 8.06% progressed (95%CI 3.65-16.90), and 60.23% had persistent disease (95%CI 55.08-67.38).
    CONCLUSIONS: Borderline and mild-definite latent RHD show variable evolution following initial diagnosis. While 8% of mild-definite and 14% borderline cases had signs of disease progression at follow-up, a third of mild-definite and half of borderline cases had disease regression, even with sub adequate antibiotic prophylaxis. The significant variability between study cohorts suggests latent RHD natural history is likely variable between different endemic regions globally. Future research is needed to identify those individuals who would most benefit from antibiotic prophylaxis and determine regional natural history of latent RHD.
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  • 文章类型: Journal Article
    当我们朝着消除结核病的目标前进时,一个重点领域是结核病预防性治疗,涉及治疗潜伏性结核病感染,生成未来结核病病例的池。儿童特别容易受到传播结核病和结核病脑膜炎等重病结核病的影响,这凸显了解决0-18岁年龄组潜伏性结核病感染的必要性。国家结核病消除计划已将其战略扩展到包括结核病预防性治疗,从治疗5岁以下儿童和PLHIV到治疗5岁以上儿童。青少年和成人家庭接触结核病例和免疫抑制高危人群。该计划建议使用较新的方案,包括每周一次的INH和三个月的利福喷丁(3HP)。该领域业务研究的关注和机会包括监测和监测药物毒性和耐药性,确保依从性和改善治疗完成度和结果的策略。
    As we march towards the goals of TB elimination, one area of focus is on TB preventive therapy which deals with treatment of latent TB infection, the pool from which future TB cases are generated. Children are particularly vulnerable to disseminated TB and seriously ill TB like TB meningitis, which highlights the need for addressing latent TB infection in the age group of 0-18 years. The national TB elimination program has extended it\'s strategy to include TB preventive therapy from treating children <5 years and PLHIV to treating children ≥5 years, adolescents and adult household contacts of TB cases and at risk immunosuppressed groups. Newer regimens including weekly INH and Rifapentine for three months (3HP) has been recommended in the program. Concerns and opportunities for operational research in this area include surveillance and monitoring for drug toxicity and resistance, strategies to ensure adherence and improve treatment completion and outcomes.
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  • 文章类型: Journal Article
    目的:检查疼痛灾难的患病率,并确定其是否影响分娩时的住院时间。
    方法:纵向队列研究。未产妇女,在英国经历了一次简单的怀孕,在妊娠25至33周之间招募。参与者完成了两份在线问卷,(1)关于招聘,包括产后3周的疼痛灾难量表(PCS)和Wijma分娩期望问卷(WDEQ-A)(2)。
    结果:共有389名符合条件的参与者进入研究。疼痛灾难患者(PCS≥20)的女性比例为28.1%,而7.6%的患者有较高的疼痛灾难评分(PCS≥30)。疼痛灾难与入院时间之间没有关联。报告害怕分娩(WDEQ-A评分≥85)的女性比例为10.6%。在较低(≥20)和较高(≥30)阈值时,对分娩的恐惧与PCS评分(p<.001)高度相关。
    结论:虽然没有统计学意义,疼痛灾难的女性倾向于在潜伏期到医院就诊。PCS和WDEQ-A评分之间的高度显著关联对这些女性的识别具有意义,并表明PCS可以用作筛查工具,以识别那些对疼痛的恐惧加剧并且可能继续发展的女性临床相关的分娩恐惧。需要进一步的研究来确认PCS作为女性筛查工具的可接受性。
    OBJECTIVE: To examine the prevalence of pain catastrophising and identify whether it impacts on the timing of hospital admission when in labour.
    METHODS: A longitudinal cohort study. Nulliparous women, experiencing an uncomplicated pregnancy in England, were recruited between 25 and 33 weeks gestation. Participants completed two online questionnaires, (1) on recruitment, including the Pain Catastrophizing Scale (PCS) and the Wijma Delivery Expectancy Questionnaire (WDEQ-A) (2) at three weeks postnatal.
    RESULTS: A total of 389 eligible participants entered the study. The percentage of women who were pain catastrophisers (PCS ≥ 20) was 28.1 %, while 7.6 % had a high pain catastrophising score (PCS ≥ 30). There was no association between pain catastrophising and the timing of hospital admission. The percentage of women reporting fear of childbirth (WDEQ-A score of ≥ 85) was 10.6 %. Fear of childbirth was highly associated with PCS scores (p <.001) at both the lower (≥20) and higher (≥30) thresholds.
    CONCLUSIONS: Although not statistically significant, there was a tendency for women who pain catastrophise to present to hospital in the latent phase. The highly significant association between PCS and WDEQ-A scores has implications for the identification of these women and suggests that the PCS can be used as a screening tool to identify those women who have heightened fear around pain and who may also go on to develop clinically relevant fear of childbirth. Further studies are needed to confirm the acceptability of the PCS as a screening tool with women.
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  • 文章类型: Journal Article
    在工作记忆(WM)中要记住的信息之间切换一个人的注意力焦点对于认知至关重要,但是实现这一目标的机制尚不清楚。一些模型表明,被动地保留焦点注意力之外的“潜在”信息并将其返回到焦点涉及偶发性长期记忆(LTM)检索过程,即使延迟仅几秒钟。我们通过检查两个项目的性能来检验这一假设,双重追溯WM任务(即引导参与者关注将在每次试验中首先和第二次测试的项目)和随后的LTM测试来自初始WM任务的项目。在WM延迟期间,我们比较了老年人(具有LTM缺陷的人群)和具有充分(实验1)或分散(实验2)注意力的年轻人在这些测试中的表现。逆行,老化,注意力分散对WM绩效都有显著影响,但没有与项目的后续LTM性能进行交互或系统地影响,location,或以高或低置信度做出的联想记忆判断。WM和LTM之间的这些分离表明,LTM检索过程不涉及保留和重新激活这两个项目的焦点关注之外的项目,双重回归WM范式,显示了神经影像学,神经刺激,和潜在WM的神经计算建模证据;相反,结果与WM的动态处理模型(Rose,2020年,心理科学现状)。
    Switching one\'s focus of attention between to-be-remembered items in working memory (WM) is critical for cognition, but the mechanisms by which this is accomplished are unclear. A long-term memory (LTM) account suggests that switching attention away from an item, and passively retaining and reactivating such \"latent\" items back into the focus of attention involves episodic LTM retrieval processes, even for delays of only a few seconds. We tested this hypothesis using a two-item, double-retrocue WM task that requires participants to switch attention away from and reactivate items followed by subsequent LTM tests for reactivated items from the initial WM task (vs. continuously retained or untested control items). We compared performance on these tests between older adults (a population with LTM deficits) and young adults with either full (Experiment 1) or divided (Experiment 2) attention during the WM delay periods. The effects of reactivating latent items, as well as ageing and divided attention, had significant effects on WM performance, but did not interact with or systematically affect subsequent LTM for reactivated versus control items on item-, location-, or associative-recognition memory judgements made with either high or low confidence. Experiment 3 confirmed that these effects did not depend on whether or not young participants were warned about the subsequent LTM tests before performing the WM task. These dissociations between WM and LTM are inconsistent with the LTM account of latent WM; they are more consistent with the dynamic processing model of WM (Current Directions in Psychological Science).
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  • 文章类型: Journal Article
    流疱疹病毒1(OsHV-1)是太平洋牡蛎经济上最重要的病原体之一。了解这种病毒的发病机理对于开发控制贝类养殖场爆发的工具至关重要。OsHV-1与脊椎动物疱疹病毒遗传相关,有一个裂解和潜在的阶段,潜伏阶段能够被重新激活到裂解阶段。这里,在实验和自然感染的牡蛎中研究了太平洋牡蛎中的OsHV-1潜伏期。注射OsHV-1TomalesBay菌株的一岁牡蛎在注射后(dpi)1至4天之间可检测到溶解性感染,但在5dpi后未检测到。在4天的急性期,注射的牡蛎向水中释放1×102至1×104个DNA拷贝/ml。在注射相同OsHV-1菌株的两岁牡蛎中,无法检测到裂解脱落;但是,OsHV-1基因组可通过qPCR在内收肌中检测到,吉尔,Mantle,和前3dpi内的血细胞,之后它变得无法察觉。在内收肌中没有检测到OsHV-1,吉尔,注射后第15天和第21天的实验感染牡蛎或OsHV-1死亡事件后9个月的牡蛎样本;然而,使用巢式PCR,可以在21dpi的实验感染牡蛎和自然感染牡蛎的血细胞中检测到OsHV-1DNA。此外,在1至21dpi之间的实验感染牡蛎的血细胞和自然感染牡蛎的血细胞中可检测到裂解病毒基因转录。此外,OsHV-1爆发后12个月,在21dpi的实验感染的牡蛎和自然感染的牡蛎中诱导了OsHV-1从潜伏期重新激活。
    Ostreid herpesvirus 1 (OsHV-1) is one of the most economically important pathogens of Pacific oysters. Understanding the pathogenesis of this virus is critical to developing tools to control outbreaks on shellfish farms. OsHV-1 is genetically related to vertebrate herpesviruses, which have a lytic and a latent stage, with the latent stage capable of being reactivated to the lytic stage. Here, OsHV-1 latency in Pacific oysters was investigated in experimentally and naturally infected oysters. Lytic infection in one-year-old oysters injected with the Tomales Bay strain of OsHV-1 was detectable between 1 and 4 days post-injection (dpi) but was not detectable after 5 dpi. The injected oysters shed 1 × 102 to 1 × 104 DNA copies/ml into the water during the 4-day acute phase. Lytic shedding was not detectable in two-year-old oysters injected similarly with the same strain of OsHV-1; however, the OsHV-1 genome was detectable by qPCR in the adductor muscle, gill, mantle, and hemocytes within the first 3 dpi, after which it became undetectable. No OsHV-1 was detectable in the adductor muscle, gill, or mantle from experimentally infected oysters on days 15 and 21 post-injection or from oysters sampled 9 months after surviving an OsHV-1 mortality event; however, OsHV-1 DNA could be detected in hemocytes of both experimentally infected oysters at 21 dpi and naturally infected oysters using nested PCR. In addition, lytic viral gene transcription was detectable in hemocytes of experimentally infected oysters between 1 and 21 dpi and in hemocytes of naturally infected oysters. Furthermore, OsHV-1 reactivation from latency was induced in experimentally infected oysters at 21 dpi and in naturally infected oysters 12 months after an OsHV-1 outbreak.
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  • 文章类型: Journal Article
    任何精神病理学诊断的关键问题是病情是连续的还是不连续的,具有典型的变化。这项研究的主要目的是使用多方法方法来检查自闭症谱系障碍(ASD)的广泛潜在分类与维度结构。
    数据汇总了七个独立的ASD参与者样本,其他神经发育障碍(NDD),和非ASD/NDD对照(总计Ns=512-16,755;年龄1.5-22)。来自四个不同表型指标的得分形成了潜在ASD构建体的复合“指标”。主要指标集包括来自七个不同的社交刺激范例的眼睛注视指标。逻辑回归用于组合范式内/跨范式的凝视度量,并推导出预测概率作为指标值。次要指标集由ASD症状的临床观察和家长报告测量构建。指标集已提交给分类统计和潜在类别分析。
    在所有指标集和分析方法中,与ASD诊断密切相关的分类结构得到了强有力的支持.与实质性表型异质性的概念一致,ASD类别的症状严重程度范围很广.尽管对男女智商范围广泛的大样本进行了检查,智商较低的男性和儿童在ASD类别中的比例过高,与诊断病例的观察结果相似。
    我们的发现为与ASD诊断密切相关的分类结构提供了强有力的支持。本结果支持在病因学和临床研究中使用诊断良好和具有代表性的ASD组,激励正在进行的ASD表型的主要驱动因素的搜索。尽管ASD的分类结构,定量症状测量对于检查与其他因素的关系似乎更有用.
    UNASSIGNED: A key question for any psychopathological diagnosis is whether the condition is continuous or discontinuous with typical variation. The primary objective of this study was to use a multi-method approach to examine the broad latent categorical versus dimensional structure of autism spectrum disorder (ASD).
    UNASSIGNED: Data were aggregated across seven independent samples of participants with ASD, other neurodevelopmental disorders (NDD), and non-ASD/NDD controls (aggregate Ns = 512-16,755; ages 1.5-22). Scores from four distinct phenotype measures formed composite \"indicators\" of the latent ASD construct. The primary indicator set included eye gaze metrics from seven distinct social stimulus paradigms. Logistic regressions were used to combine gaze metrics within/across paradigms, and derived predicted probabilities served as indicator values. Secondary indicator sets were constructed from clinical observation and parent-report measures of ASD symptoms. Indicator sets were submitted to taxometric- and latent class analyses.
    UNASSIGNED: Across all indicator sets and analytic methods, there was strong support for categorical structure corresponding closely to ASD diagnosis. Consistent with notions of substantial phenotypic heterogeneity, the ASD category had a wide range of symptom severity. Despite the examination of a large sample with a wide range of IQs in both genders, males and children with lower IQ were over-represented in the ASD category, similar to observations in diagnosed cases.
    UNASSIGNED: Our findings provide strong support for categorical structure corresponding closely to ASD diagnosis. The present results bolster the use of well-diagnosed and representative ASD groups within etiologic and clinical research, motivating the ongoing search for major drivers of the ASD phenotype. Despite the categorical structure of ASD, quantitative symptom measurements appear more useful for examining relationships with other factors.
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