International Code of Nomenclature of Prokaryotes

国际原核生物命名法
  • 文章类型: Journal Article
    国际原核生物系统学委员会通过《国际原核生物命名法》管理原核生物命名规则,确保国际系统和进化微生物学杂志的出版,并致力于代表有关原核命名法的微生物学学科的利益。国际原核生物系统学委员会(ICSP)的职能和运作机制在其章程中进行了定义,最后一次修订是在2019年。作为2020-2023年和2023-2026年ICSP执行委员会和司法委员会的成员,我们在这里提出了一些进一步的修订,以帮助提高法规的清晰度和功能。
    The International Committee on Systematics of Prokaryotes serves to administer the rules of prokaryotic nomenclature via the International Code of Nomenclature of Prokaryotes, ensures the publication of the International Journal of Systematic and Evolutionary Microbiology, and works to represent the interests of the microbiological disciplines regarding prokaryotic nomenclature. The functions and mechanisms of operation of the International Committee on Systematics of Prokaryotes (ICSP) are defined in its Statutes, which were last revised in 2019. As members of the 2020-2023 and the 2023-2026 ICSP Executive Board and the Judicial Commission, we propose here some further revisions to help improve the clarity and functionality of the Statutes.
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  • 文章类型: Journal Article
    根据一项关于修订《国际原核生物命名法》附录9的建议,其中包括按地理位置命名属的准则,我在此报告国际原核生物系统学委员会成员对这一提案的投票结果,并提出将纳入附录9的准则。
    Following a proposal to emend Appendix 9 of the International Code of Nomenclature of Prokaryotes with guidelines for the naming of genera after geographical locations, I here report the outcome of the ballot on this proposal by the members of the International Committee on Systematics of Prokaryotes and present the guidelines to be incorporated in Appendix 9.
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  • 文章类型: Journal Article
    2014年,据报道,由于蓝细菌属名称Hansgirg1884的优先级,细菌属名称为Zopf1891的细菌属是非法的。从那时起,这一结论的后果在很大程度上被忽视了,虽然对《国际原核生物命名法》的相关规则进行了修改,包括对《守则》处理蓝藻成员名称的方式的重大更改。鉴于术语问题的复杂性,我们要求国际原核生物系统学委员会司法委员会就红球菌Zopf1891属名称(1980年批准清单)是否非法发表意见。
    In 2014, it was reported that the bacterial genus name Rhodococcus Zopf 1891 was illegitimate due to the priority of the cyanobacterial genus name Rhodococcus Hansgirg 1884. Since that time, the consequences of this conclusion have been largely ignored, whilst changes have been made to relevant Rules of the International Code of Nomenclature of Prokaryotes, including significant changes to the way in which the Code treats the names of members of Cyanobacteriota. Given the complexity of the nomenclatural issues, we request the opinion of the Judicial Commission of the International Committee on Systematics of Prokaryotes as to whether the genus name Rhodococcus Zopf 1891 (Approved Lists 1980) is illegitimate.
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  • 文章类型: Journal Article
    国际原核生物命名法(ICNP)现在包括类别域和王国。为了在ICNP下有效公布他们的名字,我们在这里考虑两个已知的域,\'细菌\'和\'古细菌\',以及一些适合王国等级的分类单元,基于以前的系统发育和分类学研究。建议将细菌域细分为王国Bacillati,梭杆菌,Pseudomonadati和Thermotogati。这种安排反映了当代的系统发育假设以及先前基于细胞壁结构的分类学建议,包括\'diderms\'与\'单表皮\',Gracilicutesvs.Firmicutes,\'Negibacteria\'vs.\'Unibacles\'',\'水细菌\'与\'Terrabacteria\',和\'水细菌\'与\'Terrabacterida\'。古细菌领域被提议包括王国甲烷细菌,Nanobdellati和Thermoproteati,反映了先前对“Euryarchoota”的划分,“DPANN超门”和“TACK超门”。
    The International Code of Nomenclature of Prokaryotes (ICNP) now includes the categories domain and kingdom. For the purpose of the valid publication of their names under the ICNP, we consider here the two known domains, \'Bacteria\' and \'Archaea\', as well as a number of taxa suitable for the rank of kingdom, based on previous phylogenetic and taxonomic studies. It is proposed to subdivide the domain Bacteria into the kingdoms Bacillati, Fusobacteriati, Pseudomonadati and Thermotogati. This arrangement reflects contemporary phylogenetic hypotheses as well as previous taxonomic proposals based on cell wall structure, including \'diderms\' vs. \'monoderms\', Gracilicutes vs. Firmicutes, \'Negibacteria\' vs. \'Unibacteria\', \'Hydrobacteria\' vs. \'Terrabacteria\', and \'Hydrobacterida\' vs. \'Terrabacterida\'. The domain Archaea is proposed to include the kingdoms Methanobacteriati, Nanobdellati and Thermoproteati, reflecting the previous division into \'Euryarchaeota\', \'DPANN superphylum\' and \'TACK superphylum\'.
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  • 文章类型: Journal Article
    在对修改原则8规则5b的建议进行电子讨论之后,8,15,33a,和国际原核生物命名法(ICNP)的附录7,我在此报告原核生物系统学国际委员会成员对这些提案的投票结果。这些修订规定了ICNP的王国和领域类别的增加。
    Following an electronic discussion on proposals to emend Principle 8, Rules 5b, 8, 15, 33a, and Appendix 7 of the International Code of Nomenclature of Prokaryotes (ICNP), I here report the outcome of the ballot on these proposals by the members of the International Committee on Systematics of Prokaryotes. These emendations enact the addition of the categories of kingdom and domain to the ICNP.
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  • 文章类型: Journal Article
    在对修订规则8、15、22、25a的建议进行电子讨论之后,30(3)(b)、30(4)、34a,和《国际原核生物命名法》附录7,我在此报告原核生物系统学国际委员会成员对这些提案的投票结果。
    Following an electronic discussion on proposals to emend Rules 8, 15, 22, 25a, 30(3)(b), 30(4), 34a, and Appendix 7 of the International Code of Nomenclature of Prokaryotes, I here report the outcome of the ballot on these proposals by the members of the International Committee on Systematics of Prokaryotes.
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  • 文章类型: Journal Article
    附录9,《国际原核生物命名法》第E节提供了有关如何形成形容词特异性和亚特异性标记的指南,这些标记反映了发现或研究生物的地理位置。它没有提到按地理位置命名属的方法。我们在此建议对附录9进行修订,并就如何形成此类名称提出建议。还对附录9第E节当前措辞的执行情况提出了意见。
    Appendix 9, Section E of the International Code of Nomenclature of Prokaryotes provides guidelines on how to form adjectival specific and subspecific epithets that reflect the geographical location where the organism was found or studied. It does not mention ways of naming genera after geographical locations. We here propose emendation of Appendix 9 with the recommendations on how to form such names. Comments on the implementation of the current wording of Appendix 9, Section E are also made.
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  • 文章类型: Journal Article
    原核生物的命名受《国际原核生物命名法》(ICNP)规则的规范,并基于Linnaean二项式系统。《守则》的现行规则仅涵盖有教养的少数群体的名称。最近,国际原核生物系统学委员会拒绝了将未培养的大多数细菌和古细菌纳入《守则》规则的提议。Candidatus的临时等级可用于命名未耕种的原核生物,其名称无法根据ICNP的规则有效发布,但是它们的名称现在可以在根据序列数据描述的原核生物命名代码(SeqCode)下进行验证,这是最近建立的,以涵盖未培养的多数的命名法。宏基因组学,单细胞基因组学,和高通量栽培技术导致了大量目前等待命名的新生物。GAN和Protologger等自动化程序可以帮助研究人员命名和描述新发现的原核生物,种植和未种植。然而,拉丁语和希腊语的技能仍然是必不可少的适当的质量控制的名称,必须符合标准的命名法。
    The nomenclature of prokaryotes is regulated by the rules of the International Code of Nomenclature of Prokaryotes (ICNP) and is based on the Linnaean binomial system. The current rules of the Code only cover the nomenclature of the cultivated minority. Proposals to incorporate the uncultivated majority of bacteria and archaea under the rules of the Code were recently rejected by the International Committee on Systematics of Prokaryotes. The provisional rank of Candidatus can be used to name uncultivated prokaryotes whose names cannot be validly published under the rules of the ICNP, but their names can now be validated under the Code of Nomenclature of Prokaryotes Described from Sequence Data (the SeqCode), which was recently established to cover the nomenclature of the uncultivated majority. Metagenomics, single-cell genomics, and high-throughput cultivation techniques have led to a flood of new organisms currently waiting to be named. Automated programs such as GAN and Protologger can assist researchers in naming and describing newly discovered prokaryotes, cultivated as well as uncultivated. However, Latin and Greek skills remain indispensable for proper quality control of names that must meet the standards set by the codes of nomenclature.
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  • 文章类型: Journal Article
    尽管最初的名称建议不满足所有要求,但偶尔会尝试根据国际原核生物命名法(ICNP)对原核生物分类单元的名称进行验证。在这种情况下,更正的出版是必要的,但作者必须确保更正包含相应分类单元的完整描述。对原始文章的修改与ICNP不兼容。有效公布的一个要求是有效公布分类单元名称构成永久记录。出版后修改文章的期刊不能作为有效出版物的来源。
    The validation of the name of a prokaryotic taxon under the International Code of Nomenclature of Prokaryotes (ICNP) is occasionally attempted although the original proposal of the name does not meet all requirements. The publication of a corrigendum is necessary in such a case but authors must ensure that the corrigendum contains the full description of the respective taxon. The modification of the original article is not compatible with the ICNP. One requirement for valid publication is that the effective publication of a taxon name constitutes a permanent record. Journals which modify articles after publication are not acceptable as a source of effective publications.
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  • 文章类型: Journal Article
    为了完成正在进行的《国际原核生物命名法》的修订,我们在这里建议修订规则8、15、22、25a,30(3)(b)、30(4)、34a和附录7。这些拟议的修订涉及:属以上分类单元的命名类型;在补充材料中或在电子印刷服务器上发表的论文中发表的名称是否适合有效发表;物种或亚种名称的有效出版物中要包括的培养物集合名称的数量,以符合该名称的验证;可能会对类型菌株的升高进行限制的种类;以及是否将亚种的等级降低到该物种的新亚种或组合的等级的问题。其中一些修订改变了《守则》的含义,而另一些则只是文字上的澄清。
    To complete the ongoing revision of the International Code of Nomenclature of Prokaryotes, we here propose emendation of Rules 8, 15, 22, 25a, 30(3)(b), 30(4), 34a and Appendix 7. These proposed emendations deal with: the nomenclatural type of taxa above genus; the suitability of names published in supplementary material or in papers published on e-print servers for effective publication; the number of culture collection designations to be included in an effective publication of a name of a species or subspecies to qualify for validation of the name; the kinds of restrictions that may be attached to deposits of type strains; and the question whether elevation of a subspecies to the rank of species or lowering of a species to the rank of subspecies establish new combinations. Some of these emendations change the meaning of the Code while others are mere textual clarifications.
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