Insect pest

害虫
  • 文章类型: Journal Article
    全球农业生产受到虫害的严重阻碍,对环境问题的天然实用农药的需求仍未满足。扁桃体(涂抹。)也被称为Crofton杂草,是一种入侵的多年生草本植物,已知具有多种生物活性化合物。在我们的研究中,龙脑代谢物的两种异构体,即10Hα-9-氧代-葛根酮(10HA)和10Hβ-9-氧代-葛根酮(10HB),是从克罗夫顿杂草中鉴定出来的,对小菜蛾表现出有效的拒食和杀幼虫活性。对于拒食活性,选择方法中10HA和10HB的中位有效浓度(EC50)值分别为2279mg/L和3233mg/L,分别,对于没有选择的方法,EC50值分别为1721mg/L和2394mg/L,分别。对于杀幼虫活动,10HA和10HB的致死浓度(LC50)值在48h分别为2421mg/L和4109mg/L,在72h分别为2101mg/L和3550mg/L。此外,体内和体外研究均表明,异构体10HA和10HB表现出有效的解毒酶抑制活性,例如羧酸酯酶和谷胱甘肽S-转移酶。分子对接和MD模拟分析提供了对鼠尾酮代谢物的异构体与P.xylostella的羧酸酯水解酶蛋白(基因:pxCCE016b)之间可能相互作用的见解,这导致发现CarEH蛋白在P.xylostella中两种化合物的解毒中起重要作用。最后,我们的发现表明,主要的酶受到Ageraphorone代谢物异构体的抑制,对昆虫造成毒性,是羧酸酯酶和谷胱甘肽S-转移酶。
    Global agricultural production is significantly hampered by insect pests, and the demand for natural pragmatic pesticides with environmental concern remains unfulfilled. Ageratina adenophora (Spreng.) also known as Crofton weed, is an invasive perennial herbaceous plant that is known to possess multiple bioactive compounds. In our study, two isomers of ageraphorone metabolites i.e, 10 Hα-9-oxo-ageraphorone (10HA) and 10 Hβ-9-oxo-ageraphorone (10HB), were identified from Crofton weed, exhibiting potent antifeedant and larvicidal activities against Plutella xylostella. For antifeedant activity, the median effective concentration (EC50) values for 10HA and 10HB in the choice method were 2279 mg/L and 3233 mg/L, respectively, and for the no choice method, EC50 values were 1721 mg/L and 2394 mg/L, respectively. For larvicidal activity, lethal concentration (LC50) values for 10HA and 10HB were 2421 mg/L and 4109 mg/L at 48 h and 2101 mg/L and 3550 mg/L at 72 h. Furthermore, both in- vivo and in-vitro studies revealed that the isomers 10HA and 10HB exhibited potent detoxifying enzymes inhibition activity such as carboxylesterase and glutathione S-transferases. Molecular docking and MD simulation analysis provide insight into the possible interaction between isomers of ageraphorone metabolites and Carboxylic Ester Hydrolase protein (Gene: pxCCE016b) of P. xylostella, which led to a finding that CarEH protein plays a significant role in the detoxification of the two compounds in P. xylostella. Finally, our findings show that the primary enzymes undergoing inhibition by isomers of ageraphorone metabolites, causing toxicity in insects, are Carboxylesterase and glutathione S-transferase.
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  • 文章类型: Journal Article
    对于国家植物保护组织而言,精确评估虫害的风险至关重要。这种准确性在林业相关商品的国际贸易协定谈判中至关重要,它们有可能携带害虫,并导致进口国意外引进。在我们的研究中,我们采用了机械和相关生态位模型来评估和绘制当前和未来气候下Aeoleshessarta潜在建立的全球模式。这种昆虫是影响杨属树种的重要害虫,Salix,宏碁,Malus,Juglans,和其他硬木树。值得注意的是,在目前不存在的国家,它也被归类为检疫性害虫。机械模型,CLIMEX,使用特定物种的生理耐受阈值进行校准,提供对影响物种的环境因素的详细了解。相比之下,相关模型,最大熵(MaxEnt),利用物种发生和空间气候数据,根据观察到的数据和环境条件,提供对物种分布的见解。CLIMEX和MaxEnt模型的预计电位分布与目前已知的A.sarta分布很好地吻合。CLIMEX预测比MaxEnt更广泛的全球分布,表明大多数中半球和南半球都适合其分布,不包括极端的北半球,中非国家,和澳大利亚的北部。两种模型都能准确预测已知的沙尔塔在亚洲大陆的分布,他们的预测表明,随着未来气候温度的变化,沙尔塔的全球分布范围总体上略有增加,主要集中在中半球和北半球。此外,这些模型预测了欧洲和北美的合适条件,其中A.sarta目前不存在,但它的首选宿主物种,白杨,是present。在全球范围内,与A.sarta分布相关的主要环境变量是年平均温度和降水率。本研究中开发的预测模型提供了对A.sarta建立的全球风险的见解,并且对于监测不同国家的潜在害虫引入具有价值。此外,政策制定者和贸易谈判者可以利用这些模型就虫害管理和国际贸易协定做出基于科学的决策。
    A precise evaluation of the risk of establishing insect pests is essential for national plant protection organizations. This accuracy is crucial in negotiating international trade agreements for forestry-related commodities, which have the potential to carry pests and lead to unintended introductions in the importing countries. In our study, we employed both mechanistic and correlative niche models to assess and map the global patterns of potential establishment for Aeolesthes sarta under current and future climates. This insect is a significant pest affecting tree species of the genus Populus, Salix, Acer, Malus, Juglans, and other hardwood trees. Notably, it is also categorized as a quarantine pest in countries where it is not currently present. The mechanistic model, CLIMEX, was calibrated using species-specific physiological tolerance thresholds, providing a detailed understanding of the environmental factors influencing the species. In contrast, the correlative model, maximum entropy (MaxEnt), utilized species occurrences and spatial climatic data, offering insights into the species\' distribution based on observed data and environmental conditions. The projected potential distribution from CLIMEX and MaxEnt models aligns well with the currently known distribution of A. sarta. CLIMEX predicts a broader global distribution than MaxEnt, indicating that most central and southern hemispheres are suitable for its distribution, excluding the extreme northern hemisphere, central African countries, and the northern part of Australia. Both models accurately predict the known distribution of A. sarta in the Asian continent, and their projections suggest a slight overall increase in the global distribution range of A. sarta with future changes in climate temperature, majorly concentrating in the central and northern hemispheres. Furthermore, the models anticipate suitable conditions in Europe and North America, where A. sarta currently does not occur but where its preferred host species, Populus alba, is present. The main environmental variables associated with the distribution of A. sarta at a global level were the average annual temperature and precipitation rate. The predictive models developed in this study offer insights into the global risk of A. sarta establishment and can be valuable for monitoring potential pest introductions in different countries. Additionally, policymakers and trade negotiators can utilize these models to make science-based decisions regarding pest management and international trade agreements.
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  • 文章类型: Journal Article
    花生的农场损失(ArachishypogaeaL.,Fabales:Fabaceae)对美国花生的可持续生产和价值构成持续威胁。这项研究提供了有关地下害虫空间分布和花生质量各个方面的经验数据。在东北10个县随机抽取的20个花生田进行了调查,东南,佐治亚州西南部。在格鲁吉亚花生生产县发现的主要害虫是双虾(Say),Elasmopallignosellus(Zeller),和暗黑夜蛾。在东北各县,Bilineatus的高患病率导致昆虫受损的豆荚(%IDP)显着增加,昆虫损坏的内核(%IDK),变色内核(%DK),吊舱重量损失(%PWL),和籽粒重量损失(%KWL)。同样,东南各县的DK%很高,破裂的吊舱(%CP),和E.Lignosellus感染。在西南各县,主要是高D.undecimmpunctata侵染导致最高%IDP。所有县的水分含量(%MC)都过高(22.19%-23.17%)。花生中的收获前黄曲霉毒素污染在所有研究地点都很普遍,特别是在具有高发病率的县,并可能导致整个供应链中黄曲霉毒素水平的风险增加。然而,不同的地区丰富的害虫和广泛存在的黄曲霉毒素在格鲁吉亚的花生田提供了有价值的见解制定综合害虫管理策略针对地下害虫。这对于解决双歧杆菌的影响尤其重要,E.lignosellus,和D.undecimmpunctata对花生中黄曲霉毒素含量的影响,并确定了在收获时减轻花生中黄曲霉毒素污染的途径。
    On-farm losses of peanuts (Arachis hypogaea L., Fabales: Fabaceae) pose a persistent threat to the sustainable production and value of peanuts in the United States. This study presents empirical data on the spatial distribution of subterranean insect pests and various quality aspects of peanuts. Surveys were conducted in 20 randomly selected peanut fields in 10 counties in Northeast, Southeast, and Southwest Georgia. The primary insect pests found in Georgia\'s peanut production counties were Pangaeus bilineatus (Say), Elasmopalpus lignosellus (Zeller), and Diabrotica undecimpunctata Howardi. In the northeast counties, a high prevalence of P. bilineatus led to a significant increase in insect-damaged pods (%IDP), insect-damaged kernels (%IDK), discolored kernels (%DK), pod weight loss (%PWL), and kernel weight loss (%KWL). Similarly, southeast counties had a high %DK, cracked pods (%CP), and E. lignosellus infestation. In southwest counties, predominantly high D. undecimpunctata infestations resulted in the highest %IDP. Moisture content (%MC) was excessively high in all the counties (22.19%-23.17%). Preharvest aflatoxin contamination in peanuts was prevalent across all studied locations, particularly in counties with a high incidence of P. bilineatus and may cause increased risk in aflatoxin levels along the supply chain. Nevertheless, the diverse regional abundance of insect pests and the widespread presence of aflatoxins in Georgia\'s peanut fields offer valuable insights for developing integrated pest management strategies targeting subterranean insect pests. This is especially crucial in addressing the impact of P. bilineatus, E. lignosellus, and D. undecimpunctata on aflatoxins content of peanuts and determining the pathway for mitigation of aflatoxin contaminations in peanuts at harvest.
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  • 文章类型: Journal Article
    棉铃象鼻虫(CBW,Anthonomusgrandis)是对棉花作物(陆地棉)的最重大威胁之一。尽管付出了巨大的努力,用于CBW的有效露地控制的商业上可行的转基因棉花事件的开发仍然难以捉摸。这项研究描述了杀虫毒素Cry23Aa和Cry37Aa对CBW的详细表征。我们的发现表明,仅使用补充了Cry37Aa的人工饮食喂养的CBW幼虫与对照组相比没有统计学差异。相反,当只暴露于Cry23Aa时,幼虫存活率下降了约69%。然而,在人工饮食中同时提供Cry23Aa和Cry37Aa导致CBW幼虫的死亡率接近100%(LC50等于0.26PPM)。此外,我们通过在花芽特异性pGhFS4和pGhFS1启动子的调控下引入cry23Aa和cry37Aa基因来改造转基因棉花植物,分别。在确认了45个转基因棉花事件后,我们选择了在花蕾中表现出Cry23Aa和Cry37Aa毒素表达水平升高的前七个事件,70%,用于温室生物测定。在T0和T1代转基因棉花植株上取食的CBW幼虫的死亡率为75%至100%。我们的计算分析揭示了Cry23Aa具有β-孔形成毒素(β-PFT)的所有标志特征,特异性结合糖蛋白中的糖成分。有趣的是,我们的研究还在Cry23Aa中发现了一个独特的锌结合位点,似乎参与了蛋白质-蛋白质的相互作用。最终,我们的讨论集中在Cry23Aa的关键结构属性上,这些属性可能在毒素的作用机制中起作用。由于观察到CBW的LC50较低,并且这些毒素在T0和T1植物的花蕾中都有显着积累,我们预计在这些转基因品系的连续世代中,设计用于过度表达cry23Aa和cry37Aa的棉花植物有望有效管理棉花作物中的CBW侵染。
    The cotton boll weevil (CBW, Anthonomus grandis) stands as one of the most significant threats to cotton crops (Gossypium hirsutum). Despite substantial efforts, the development of a commercially viable transgenic cotton event for effective open-field control of CBW has remained elusive. This study describes a detailed characterization of the insecticidal toxins Cry23Aa and Cry37Aa against CBW. Our findings reveal that CBW larvae fed on artificial diets supplemented exclusively with Cry23Aa decreased larval survival by roughly by 69%, while supplementation with Cry37Aa alone displayed no statistical difference compared to the control. However, the combined provision of both toxins in the artificial diet led to mortality rates approaching 100% among CBW larvae (LC50 equal to 0.26 PPM). Additionally, we engineered transgenic cotton plants by introducing cry23Aa and cry37Aa genes under control of the flower bud-specific pGhFS4 and pGhFS1 promoters, respectively. Seven transgenic cotton events expressing high levels of Cry23Aa and Cry37Aa toxins in flower buds were selected for greenhouse bioassays, and the mortality rate of CBW larvae feeding on their T0 and T1 generations ranged from 75% to 100%. Our in silico analyses unveiled that Cry23Aa displays all the hallmark characteristics of β-pore-forming toxins (β-PFTs) that bind to sugar moieties in glycoproteins. Intriguingly, we also discovered a distinctive zinc-binding site within Cry23Aa, which appears to be involved in protein-protein interactions. Finally, we discuss the major structural features of Cry23Aa that likely play a role in the toxin\'s mechanism of action. In view of the low LC50 for CBW larvae and the significant accumulation of these toxins in the flower buds of both T0 and T1 plants, we anticipate that through successive generations of these transgenic lines, cotton plants engineered to overexpress cry23Aa and cry37Aa hold promise for effectively managing CBW infestations in cotton crops.
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  • 文章类型: Journal Article
    害虫是全球农业生产中的主要限制因素之一。除了对作物的直接影响,一些植食性昆虫是植物疾病传播的有效载体。需要大量的常规杀虫剂来确保全世界的粮食生产,对经济和环境的影响很大,特别是当有益昆虫也受到经常缺乏所需特异性的化学物质的影响时。RNA干扰(RNAi)是一种天然机制基因表达调控和保护免受外源和内源遗传元件存在于大多数真核生物中,包括昆虫。双链RNA(dsRNA)或高度结构化的RNA分子是细胞酶产生几种类型的小RNA(sRNA)的底物,在转录或转录后基因沉默的靶向序列中起着至关重要的作用。RNAi调控的相对简单的规则,主要基于沃森-克里克互补性,基于这些细胞机制促进了生物技术应用。这包括使用工程化dsRNA分子的承诺,要么在作物植物中内源生产,要么外源合成并施用到作物上,作为新一代的高度特异性,可持续,和环保杀虫剂。在这种期望的基础上,本文回顾了当前有关昆虫RNAi途径的知识,以及其他一些应用问题,如重组RNA的生产和递送,这对于建立RNAi作为作物中昆虫控制的可靠技术至关重要。
    Insect pests rank among the major limiting factors in agricultural production worldwide. In addition to direct effect on crops, some phytophagous insects are efficient vectors for plant disease transmission. Large amounts of conventional insecticides are required to secure food production worldwide, with a high impact on the economy and environment, particularly when beneficial insects are also affected by chemicals that frequently lack the desired specificity. RNA interference (RNAi) is a natural mechanism gene expression regulation and protection against exogenous and endogenous genetic elements present in most eukaryotes, including insects. Molecules of double-stranded RNA (dsRNA) or highly structured RNA are the substrates of cellular enzymes to produce several types of small RNAs (sRNAs), which play a crucial role in targeting sequences for transcriptional or post-transcriptional gene silencing. The relatively simple rules that underlie RNAi regulation, mainly based in Watson-Crick complementarity, have facilitated biotechnological applications based on these cellular mechanisms. This includes the promise of using engineered dsRNA molecules, either endogenously produced in crop plants or exogenously synthesized and applied onto crops, as a new generation of highly specific, sustainable, and environmentally friendly insecticides. Fueled on this expectation, this article reviews current knowledge about the RNAi pathways in insects, and some other applied questions such as production and delivery of recombinant RNA, which are critical to establish RNAi as a reliable technology for insect control in crop plants.
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  • 文章类型: Journal Article
    大豆芽虫,巴西的一种大豆害虫,最初被确定为Coccidosemaaporema(Walsingham1914)(鳞翅目:Tortricidae)。这种物种的爆发最近有所增加,但是这种害虫的鉴定仍然不确定,与巴西地理分布相关的历史因素鲜为人知。这里,我们进行了基于分子和形态学证据的物种表征和系统地理学分析。在巴西不同地区收集了90个芽虫鳞翅目。我们对COI和COII线粒体基因进行了测序,并检查了机翼模式和男性生殖器形态。DNA条形码方法显示,有10个个体是Sphaleropa的Argyrotaenia(Meyrick1909)(鳞翅目:Tortricidae),有80个是CrocidosemaZeller属的一种。成年生殖器和翅膀的形态被证明不足以确认将巴西个体鉴定为C.aporema,最初在哥斯达黎加的一个高海拔地区描述的物种。此外,来自巴西和哥斯达黎加的推定C.aporema标本之间的遗传距离(范围从5.2%到6.4%)支持以下假设:巴西标本不适用于C.aporema。我们的分析揭示了一个单一的遗传菌株(即,种)在大豆作物上具有较低的遗传多样性。我们没有发现任何迹象表明遗传结构与种群或气脉地区之间的地理距离有关。大豆芽虫的种群扩张与巴西大豆生产面积的增加相吻合,这表明扩大大豆种植已经使这种害虫的有效种群规模显着增加。
    The soybean bud borer, a soybean pest in Brazil, was initially identified as Crocidosema aporema (Walsingham 1914) (Lepidoptera: Tortricidae). Outbreaks of this species have recently increased, but identification of this pest remains uncertain, and the historical factors associated with its geographic distribution in Brazil are little known. Here, we conducted a species characterization and phylogeographic analysis based on molecular and morphological evidence. Ninety individuals of bud-borers Lepidoptera were collected in different regions of Brazil. We sequenced COI and COII mitochondrial genes and examined wing patterns and male genital morphology. DNA barcoding approach revealed that 10 individuals were Argyrotaenia sphaleropa (Meyrick 1909) (Lepidoptera: Tortricidae) and 80 were a species of the genus Crocidosema Zeller. The morphology of the adult genitalia and wings proved to be insufficient to confirm the identification of Brazilian individuals as C. aporema, a species originally described from a high-elevation site in Costa Rica. Furthermore, the genetic distance between putative C. aporema specimens from Brazil and Costa Rica (ranging from 5.2% to 6.4%) supports the hypothesis that the Brazilian specimens are not referable to C. aporema. Our analysis revealed a single genetic strain (i.e., species) with low genetic diversity on soybean crops. We found no indication that the genetic structure was related to geographic distance among populations or edaphoclimatic regions. The population expansion of the soybean bud borer coincides with the increase in the area of soybean production in Brazil, suggesting that expanded soybean farming has allowed a significant increase in the effective population size of this pest.
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  • 文章类型: Journal Article
    背景:作物害虫严重影响作物的产量和品质。准确、快速地检测和分割作物叶片中的害虫是有效控制害虫的前提。
    方法:针对田间不规则多尺度害虫的检测问题,构建了扩大的多尺度注意U-Net(DMSAU-Net)模型,用于作物害虫检测。在它的编码器中,设计了扩张的Inception来代替U-Net中的卷积层,以提取害虫图像的多尺度特征。注意模块被添加到其解码器以聚焦于昆虫害虫图像的边缘。
    结果:对作物害虫图像IP102数据集进行了实验,检测精度达到92.16%,IoU达到91.2%,比MSR-RCNN高出3.3%和1.5%,分别。
    结论:结果表明,所提出的方法作为一种新的害虫检测方法是有效的。扩张的感知可以提高模型的准确性,注意模块可以降低上采样产生的噪声,加速模型收敛。可以得出结论,该方法可以应用于实际的农作物害虫监测系统。
    BACKGROUND: Crop pests seriously affect the yield and quality of crops. Accurately and rapidly detecting and segmenting insect pests in crop leaves is a premise for effectively controlling insect pests.
    METHODS: Aiming at the detection problem of irregular multi-scale insect pests in the field, a dilated multi-scale attention U-Net (DMSAU-Net) model is constructed for crop insect pest detection. In its encoder, dilated Inception is designed to replace the convolution layer in U-Net to extract the multi-scale features of insect pest images. An attention module is added to its decoder to focus on the edge of the insect pest image.
    RESULTS: The experiments on the crop insect pest image IP102 dataset are implemented, and achieved the detection accuracy of 92.16% and IoU of 91.2%, which is 3.3% and 1.5% higher than that of MSR-RCNN, respectively.
    CONCLUSIONS: The results indicate that the proposed method is effective as a new insect pest detection method. The dilated Inception can improve the accuracy of the model, and the attention module can reduce the noise generated by upsampling and accelerate model convergence. It can be concluded that the proposed method can be applied to practical crop insect pest monitoring system.
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  • 文章类型: Journal Article
    洋葱蚜虫,台湾新翅目,对全世界的葱属作物构成重大威胁,造成相当大的经济损失和质量下降。制定有效的虫害管理策略,了解这种害虫在不同葱属作物上的摄食行为和生活史至关重要。在这项研究中,电渗透图(EPG)技术用于监测洋葱蚜虫在4种葱属作物上的刺食行为:韭菜,韭菜,大蒜,大蒜还有青葱.EPG数据揭示了不同的进食模式,大蒜和葱比韭菜更受欢迎。此外,蚜虫主要以大蒜和葱的韧皮部为食。生活史性状分析表明,细香葱为蚜虫的发育和繁殖提供了最有利的条件,而韭菜表现出相对不利的条件。叶组织学检查也揭示了作物之间的差异,这可能会影响蚜虫的摄食行为。这项研究为洋葱蚜虫与不同葱属作物之间的相互作用提供了有价值的见解,协助制定全面的虫害控制策略,以最大程度地减少作物损害和经济损失。使用EPG等先进技术有助于更详细地了解蚜虫行为,并有望改善其他植物-害虫相互作用中的害虫管理。
    The onion aphid, Neotoxoptera formosana, poses a significant threat to Allium crops worldwide, causing considerable economic losses and quality degradation. To develop effective pest management strategies, it is crucial to understand the feeding behavior and life history of this pest on different Allium crops. In this study, the electrical penetration graph (EPG) technique was used to monitor the thorn-feeding behavior of the onion aphid on 4 Allium crops: leek, chive, garlic, and shallot. The EPG data revealed distinct feeding patterns, with garlic and shallots being more preferred hosts than chives. Additionally, the aphids primarily fed on the phloem in garlic and shallots. Analysis of life history trait showed that chives provided the most favorable conditions for aphid development and reproduction, while leek exhibited relatively unfavorable conditions. Examination of leaf histology also revealed differences among the crops, which may influence aphid feeding behavior. This study provides valuable insights into the interaction between the onion aphid and different Allium crops, aiding in the development of comprehensive pest control strategies to minimize crop damage and economic losses. The use of advanced techniques like EPG contributes to a more detailed understanding of aphid behavior and shows promise for improving pest management in other plant-pest interactions.
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  • 文章类型: Journal Article
    蚜虫基因组资源可以研究复杂的生活史特征,并提供有关媒介生物学的信息,宿主适应和物种形成。醋栗-生菜蚜虫(Nasonoviaribisnigri(半翅目:蚜科)(Mosley))是户外生菜(Lactucasativa(Asterales:Asteraceae)(Linnaeus))的世界性害虫。直到最近,抗性品种的使用是一种有效的管理ribisnigri的方法。含有单个基因(Nr基因座)的抗性品种,在1980年代推出,完全抵抗进食。这种Nr位点在莴苣中的过度依赖导致了N.ribisnigri打破抗性机制的能力,2003年首次报告。我们的工作试图了解哪些候选基因与这种抗性破坏机制相关。我们提出了两个新的ribisnigri基因组集合,对应于无毒(Nr基因座易感)和有毒(Nr基因座抗性)生物型。使用RNA测序(RNA-seq)数据的转录组学分析研究了两种ribisnigriN.生物型的基因表达变化,以了解生菜对Nr基因座的抗性的潜在机制。无毒和有毒生物型的基因组组装草图分别为94.2%和91.4%,分别。在18,872个差异表达基因中,在N.ribisnigri中鉴定出单个基因/基因座,该基因/基因座在两种抗性破坏生物型之间共享。在实时定量逆转录PCR(qRT-PCR)实验中进一步探索和验证了该基因座,并且预测了细胞质和细胞核中的定位。这是第一项提供证据的研究,表明单个基因/基因座可能是RibisnigriN.ribisnigri克服莴苣宿主中Nr基因座抗性的能力的原因。
    Aphid genomic resources enable the study of complex life history traits and provide information on vector biology, host adaption and speciation. The currant-lettuce aphid (Nasonovia ribisnigri (Hemiptera: Aphididae) (Mosley)) is a cosmopolitan pest of outdoor lettuce (Lactuca sativa (Asterales: Asteraceae) (Linnaeus)). Until recently, the use of resistant cultivars was an effective method for managing N. ribisnigri. A resistant cultivar containing a single gene (Nr-locus), introduced in the 1980s, conferred complete resistance to feeding. Overreliance of this Nr-locus in lettuce resulted in N. ribisnigri\'s ability to break resistance mechanism, with first reports during 2003. Our work attempts to understand which candidate gene(s) are associated with this resistance-breaking mechanism. We present two de novo draft assembles for N. ribisnigri genomes, corresponding to both avirulent (Nr-locus susceptible) and virulent (Nr-locus resistant) biotypes. Changes in gene expression of the two N. ribisnigri biotypes were investigated using transcriptomic analyses of RNA-sequencing (RNA-seq) data to understand the potential mechanisms of resistance to the Nr-locus in lettuce. The draft genome assemblies were 94.2% and 91.4% complete for the avirulent and virulent biotypes, respectively. Out of the 18,872 differentially expressed genes, a single gene/locus was identified in N. ribisnigri that was shared between two resistant-breaking biotypes. This locus was further explored and validated in Real-Time Quantitative Reverse Transcription PCR (qRT-PCR) experiments and has predicted localisations in both the cytoplasm and nucleus. This is the first study to provide evidence that a single gene/locus is likely responsible for the ability of N. ribisnigri to overcome the Nr-locus resistance in the lettuce host.
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  • 文章类型: Journal Article
    西印度果蝇,阿纳斯特雷法,芒果是中美洲和南美洲的主要害虫,侵袭60多种寄主水果。为了支持当前对A.oblequa的遗传和基因组研究,我们使用高保真(HiFi)长读数测序对基因组进行了测序。这导致高度连续的重叠群组装,在10个重叠群中具有90%的基因组。重叠群组装被放置在染色体环境中,使用与密切相关的物种的同伦,A.Ludens,因为两者都是A.fraterculus组的成员。产生的装配代表五个常染色体和X染色体,代表基因组的95.9%,和199个未放置的重叠群,代表剩余的4.1%。高质量四联体基因组的结构注释集的矫正分析表明,基因注释是稳健的,并确定了Anastrepha物种特有的基因,这些基因可能有助于定义其鼠疫性质,可用作比较基因组学的起点。该基因组组装代表了该物种中的第一个,并将作为未来遗传和基因组研究的基础,以支持其作为农业害虫的管理。
    The West Indian fruit fly, Anastrepha obliqua, is a major pest of mango in Central and South America and attacks more than 60 species of host fruits. To support current genetic and genomic research on A. obliqua, we sequenced the genome using high-fidelity long-read sequencing. This resulted in a highly contiguous contig assembly with 90% of the genome in 10 contigs. The contig assembly was placed in a chromosomal context using synteny with a closely related species, Anastrepha ludens, as both are members of the Anastrepha fraterculus group. The resulting assembly represents the five autosomes and the X chromosome which represents 95.9% of the genome, and 199 unplaced contigs representing the remaining 4.1%. Orthology analysis across the structural annotation sets of high quality tephritid genomes demonstrates the gene annotations are robust, and identified genes unique to Anastrepha species that may help define their pestiferous nature that can be used as a starting point for comparative genomics. This genome assembly represents the first of this species and will serve as a foundation for future genetic and genomic research in support of its management as an agricultural pest.
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