Individual prediction

个体预测
  • 文章类型: Journal Article
    在精神病研究中,平滑的眼球运动被认为是感觉运动功能的公认且可量化的生物标志物。基于神经生物学标志物在个体水平上识别精神病综合征受到异质性的限制,需要全面的外部验证以避免对预测模型的高估。这里,我们使用多变量模式分析研究了大量精神病先证者(N=674)和健康对照(N=305)样本中来自平稳追踪眼球运动的可量化感觉运动测量值.预测精神病状况的64%的平衡准确性与其他大型异质精神病样本的最新结果一致。通过独立大样本的外部验证,包括(1)精神病(N=727)与健康对照(N=292)的先证者,(2)精神病性(N=49)和非精神病性双相情感障碍(N=36),和(3)非精神病性情感障碍(N=119)和精神病(N=51)的准确率为65%,66%和58%,分别,尽管精神病综合症略有不同。我们的发现为在个体水平上识别异质性精神病综合征的生物学定义特征做出了重大贡献,强调了精神病中感觉运动功能障碍的影响。
    Smooth pursuit eye movements are considered a well-established and quantifiable biomarker of sensorimotor function in psychosis research. Identifying psychotic syndromes on an individual level based on neurobiological markers is limited by heterogeneity and requires comprehensive external validation to avoid overestimation of prediction models. Here, we studied quantifiable sensorimotor measures derived from smooth pursuit eye movements in a large sample of psychosis probands (N = 674) and healthy controls (N = 305) using multivariate pattern analysis. Balanced accuracies of 64% for the prediction of psychosis status are in line with recent results from other large heterogenous psychiatric samples. They are confirmed by external validation in independent large samples including probands with (1) psychosis (N = 727) versus healthy controls (N = 292), (2) psychotic (N = 49) and non-psychotic bipolar disorder (N = 36), and (3) non-psychotic affective disorders (N = 119) and psychosis (N = 51) yielding accuracies of 65%, 66% and 58%, respectively, albeit slightly different psychosis syndromes. Our findings make a significant contribution to the identification of biologically defined profiles of heterogeneous psychosis syndromes on an individual level underlining the impact of sensorimotor dysfunction in psychosis.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    机器学习是临床心理学和神经科学中用于个性化预测精神症状的新兴工具。然而,其在非临床人群中的应用仍处于起步阶段。鉴于在精神疾病中观察到的广泛的形态学变化,我们的研究应用了五种有监督的机器学习回归算法-岭回归,支持向量回归,偏最小二乘回归,最小绝对收缩和选择算子回归,和Elastic-Net回归预测焦虑和抑郁症状评分。我们将这些预测基于大型非临床样本(n=425)中的全脑灰质体积。我们的研究结果表明,机器学习算法可以有效地预测焦虑和抑郁症状的个体差异,根据情绪和焦虑症状问卷衡量。对预测模型有贡献的最具鉴别力的特征主要位于前额叶顶叶,temporal,视觉,和皮质下区域(例如杏仁核,海马体,和壳核)。在五个模型中的三个模型中,这些区域显示出不同的焦虑唤醒模式和高积极情绪(偏最小二乘回归,支持向量回归,和岭回归)。重要的是,这些预测在不同性别之间是一致的,并且对人口统计学变异性(例如,年龄,父母教育,等。).我们的发现为焦虑和抑郁症状特定成分的独特大脑形态模式提供了重要的见解,从神经影像学的角度支持现有的三方理论。
    Machine learning is an emerging tool in clinical psychology and neuroscience for the individualized prediction of psychiatric symptoms. However, its application in non-clinical populations is still in its infancy. Given the widespread morphological changes observed in psychiatric disorders, our study applies five supervised machine learning regression algorithms-ridge regression, support vector regression, partial least squares regression, least absolute shrinkage and selection operator regression, and Elastic-Net regression-to predict anxiety and depressive symptom scores. We base these predictions on the whole-brain gray matter volume in a large non-clinical sample (n = 425). Our results demonstrate that machine learning algorithms can effectively predict individual variability in anxiety and depressive symptoms, as measured by the Mood and Anxiety Symptoms Questionnaire. The most discriminative features contributing to the prediction models were primarily located in the prefrontal-parietal, temporal, visual, and sub-cortical regions (e.g. amygdala, hippocampus, and putamen). These regions showed distinct patterns for anxious arousal and high positive affect in three of the five models (partial least squares regression, support vector regression, and ridge regression). Importantly, these predictions were consistent across genders and robust to demographic variability (e.g. age, parental education, etc.). Our findings offer critical insights into the distinct brain morphological patterns underlying specific components of anxiety and depressive symptoms, supporting the existing tripartite theory from a neuroimaging perspective.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    根据囊胚的来源,喉癌有多种亚型,每个都有独特的转移风险和预后。预测他们的预后是一个迫切需要解决的问题。这项研究包括5953例声门癌患者和4465例非声门型(声门上和声门下)患者。使用CoxPH(Cox比例风险)的单变量和多变量回归筛选了声门和非声门癌的五个临床病理特征;对于其他模型,使用最小绝对收缩和选择算子(LASSO)回归分析选择10(声门)和11(非声门)临床病理特征,分别建立相应的生存模型,并对最佳模型进行评价。我们发现RSF(随机生存森林)是声门和非声门癌的优越模型,声门的预测一致性指数(C指数)为0.687,非声门的预测一致性指数为0.657,分别。他们1年的综合Brier评分(IBS),3年,5年的时间点是,分别,0.116,0.182,0.195(声门),和0.130,0.215,0.220(非声门),证明了模型的有效修正。我们在Shapley加法解释(SHAP)图中表示了重要变量。然后将这两个模型结合起来预测两个不同个体的预后,在预测预后方面有一定的有效性。为了我们的调查,我们建立了声门型喉癌和非声门型喉癌的独立模型,这些模型在预测生存期方面最为有效.RSF用于评估声门癌和非声门癌,对患者预后和危险因素预测有相当大的影响。
    Depending on the source of the blastophore, there are various subtypes of laryngeal cancer, each with a unique metastatic risk and prognosis. The forecasting of their prognosis is a pressing issue that needs to be resolved. This study comprised 5953 patients with glottic carcinoma and 4465 individuals with non-glottic type (supraglottic and subglottic). Five clinicopathological characteristics of glottic and non-glottic carcinoma were screened using univariate and multivariate regression for CoxPH (Cox proportional hazards); for other models, 10 (glottic) and 11 (non-glottic) clinicopathological characteristics were selected using least absolute shrinkage and selection operator (LASSO) regression analysis, respectively; the corresponding survival models were established; and the best model was evaluated. We discovered that RSF (Random survival forest) was a superior model for both glottic and non-glottic carcinoma, with a projected concordance index (C-index) of 0.687 for glottic and 0.657 for non-glottic, respectively. The integrated Brier score (IBS) of their 1-year, 3-year, and 5-year time points is, respectively, 0.116, 0.182, 0.195 (glottic), and 0.130, 0.215, 0.220 (non-glottic), demonstrating the model\'s effective correction. We represented significant variables in a Shapley Additive Explanations (SHAP) plot. The two models are then combined to predict the prognosis for two distinct individuals, which has some effectiveness in predicting prognosis. For our investigation, we established separate models for glottic carcinoma and non-glottic carcinoma that were most effective at predicting survival. RSF is used to evaluate both glottic and non-glottic cancer, and it has a considerable impact on patient prognosis and risk factor prediction.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    作为一种进行性神经退行性疾病,阿尔茨海默病(AD)的病理变化可能在临床症状出现前20年开始。由于AD的不可逆病理的性质,早期诊断为疾病的干预和治疗提供了更易处理的途径。因此,已经开发了许多用于早期诊断目的的方法。尽管已经建立了几个重要的生物标志物,大多数现有方法在描述AD进展的连续性方面表现出局限性.然而,理解这种持续发展对于理解AD的内在进展机制至关重要。在这项工作中,我们提出了一个有监督的深度树模型(SDTree)来整合AD进展和个体预测。所提出的SDTree方法使用非线性反向图嵌入将AD的进展建模为嵌入在潜在空间中的树。这样,AD进展的连续体被编码到树结构上的位置中。学习的树结构不仅可以代表AD的连续体,还可以对新主题进行预测。我们在分类任务上评估了我们的方法,并在阿尔茨海默病神经影像学计划数据集上取得了有希望的结果。
    As a progressive neurodegenerative disorder, the pathological changes of Alzheimer\'s disease (AD) might begin as much as two decades before the manifestation of clinical symptoms. Since the nature of the irreversible pathology of AD, early diagnosis provides a more tractable way for disease intervention and treatment. Therefore, numerous approaches have been developed for early diagnostic purposes. Although several important biomarkers have been established, most of the existing methods show limitations in describing the continuum of AD progression. However, understanding this continuous development is essential to understand the intrinsic progression mechanism of AD. In this work, we proposed a supervised deep tree model (SDTree) to integrate AD progression and individual prediction. The proposed SDTree method models the progression of AD as a tree embedded in a latent space using nonlinear reversed graph embedding. In this way, the continuum of AD progression is encoded into the locations on the tree structure. The learned tree structure can not only represent the continuum of AD but make predictions for new subjects. We evaluated our method on the classification task and achieved promising results on Alzheimer\'s Disease Neuroimaging Initiative dataset.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    以前的临床模型的肝细胞癌(HCC)患者接受肝动脉化疗栓塞(TACE)主要集中在总生存期,而缺乏一种简单易用的工具来预测首次TACE的反应和TACE前的风险分类管理。我们的目标是为这些患者开发手动计算的评分系统。仔细选择了437例接受TACE治疗的肝细胞癌(HCC)患者进行分析。然后将他们随机分为两组:由350名患者组成的训练组和由77名患者组成的验证组。此外,45例最近接受TACE治疗的HCC患者被纳入研究,以验证模型的有效性和适用性。为预测模型选择的因素是综合根据LASSO的结果,单变量和多变量逻辑回归分析。歧视,在训练组和验证组中评估了模型的校准能力和临床实用性.预测模型包含3个客观成像特征和2个肝功能指标。该模型显示出良好的鉴别力,AUROC为0.735、0.706和0.884,在训练组和验证组中,良好的校准。该模型根据计算的分数将患者分为三组,包括低风险,中位风险和高危人群,对TACE无反应率为26.3%,40.2%和76.8%,分别。我们得出并验证了在接受具有足够性能和实用性的首次TACE之前预测HCC患者反应的模型。对于接受TACE的HCC患者,该模型可能是有用的分层管理工具。
    Previous clinic models for patients with hepatocellular carcinoma (HCC) receiving transarterial chemoembolization (TACE) mainly focused on the overall survival, whereas a simple-to-use tool for predicting the response to the first TACE and the management of risk classification before TACE are lacking. Our aim was to develop a scoring system calculated manually for these patients. A total of 437 patients with hepatocellular carcinoma (HCC) who underwent TACE treatment were carefully selected for analysis. They were then randomly divided into two groups: a training group comprising 350 patients and a validation group comprising 77 patients. Furthermore, 45 HCC patients who had recently undergone TACE treatment been included in the study to validate the model\'s efficacy and applicability. The factors selected for the predictive model were comprehensively based on the results of the LASSO, univariate and multivariate logistic regression analyses. The discrimination, calibration ability and clinic utility of models were evaluated in both the training and validation groups. A prediction model incorporated 3 objective imaging characteristics and 2 indicators of liver function. The model showed good discrimination, with AUROCs of 0.735, 0.706 and 0.884 and in the training group and validation groups, and good calibration. The model classified the patients into three groups based on the calculated score, including low risk, median risk and high-risk groups, with rates of no response to TACE of 26.3%, 40.2% and 76.8%, respectively. We derived and validated a model for predicting the response of patients with HCC before receiving the first TACE that had adequate performance and utility. This model may be a useful and layered management tool for patients with HCC undergoing TACE.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    计算模型通常用于评估功能连接(FC)模式如何从神经元种群动态和解剖脑连接中出现。目前尚不清楚常用的组平均数据是否可以预测单个FC模式。采用了Jansen和Rit神经质量模型,其中质量使用单独的结构连通性(SC)耦合。模拟FC与个体脑磁图衍生的经验FC相关。FC使用基于相位的(相位滞后指数(PLI),锁相值(PLV)),和基于振幅的(振幅包络相关性(AEC))指标,以分析其对个体预测的拟合优度。将单个FC预测与组平均FC预测进行比较,我们测试了不同参与者的SC是否可以同样很好地预测参与者的FC模式。与基于相位的度量相比,AEC在单独模拟和经验FC之间提供了更好的匹配。与组平均SC相比,使用单个SC的模拟和经验FC之间的相关性更高。与使用参与者自己的SC相比,使用其他参与者的SC在模拟和经验FC之间产生了相似的相关性。这项工作强调了使用单个而不是组平均SC进行FC模拟的附加价值,用于此特定的计算模型,并且可以帮助更好地理解单个功能网络轨迹的基础机制。
    Computational models are often used to assess how functional connectivity (FC) patterns emerge from neuronal population dynamics and anatomical brain connections. It remains unclear whether the commonly used group-averaged data can predict individual FC patterns. The Jansen and Rit neural mass model was employed, where masses were coupled using individual structural connectivity (SC). Simulated FC was correlated to individual magnetoencephalography-derived empirical FC. FC was estimated using phase-based (phase lag index (PLI), phase locking value (PLV)), and amplitude-based (amplitude envelope correlation (AEC)) metrics to analyze their goodness of fit for individual predictions. Individual FC predictions were compared against group-averaged FC predictions, and we tested whether SC of a different participant could equally well predict participants\' FC patterns. The AEC provided a better match between individually simulated and empirical FC than phase-based metrics. Correlations between simulated and empirical FC were higher using individual SC compared to group-averaged SC. Using SC from other participants resulted in similar correlations between simulated and empirical FC compared to using participants\' own SC. This work underlines the added value of FC simulations using individual instead of group-averaged SC for this particular computational model and could aid in a better understanding of mechanisms underlying individual functional network trajectories.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    功能连接(FC)网络表征大脑区域之间的功能相互作用,并被认为是基础结构连接(SC)网络的根源。如果是这样的话,SC的个体差异应导致FC的相应个体差异。然而,直接SC和FC之间的对应关系存在差异,研究人员仍然无法通过直接SC捕获FC中的个体差异。由于大脑区域可能通过多跳间接SC通路相互作用,我们认为,可以通过适当地纳入间接SC途径来捕获个体特定的SC-FC关系。在这项研究中,我们设计了图传播网络(GPN),该网络基于SC网络对大脑区域之间的信息传播进行建模。通过多跳SC途径的相互作用的影响自然地来自GPN中的多层信息传播。我们通过多层GPN预测了基于SC网络的FC网络中的个体差异,结果表明,多层GPN结合了多跳间接SC的影响,大大提高了预测单个FC网络的能力。此外,通过预测精度评估的SC-FC关系与功能梯度负相关,这表明SC-FC关系沿着从单峰到多峰皮层的功能层次结构逐渐解耦。我们还揭示了沿着多跳SC途径的重要中间大脑区域,涉及单个SC-FC关系。这些结果表明,多层GPN可以作为在大神经成像水平上建立单个SC-FC关系的方法。
    Functional connectivity (FC) network characterizes the functional interactions between brain regions and is considered to root in the underlying structural connectivity (SC) network. If this is the case, individual variations in SC should cause corresponding individual variations in FC. However, divergences exist in the correspondence between direct SC and FC and researchers still cannot capture individual differences in FC via direct SC. As brain regions may interact through multi-hop indirect SC pathways, we conceived that one can capture the individual specific SC-FC relationship via incorporating indirect SC pathways appropriately. In this study, we designed graph propagation network (GPN) that models the information propagation between brain regions based on the SC network. Effects of interactions through multi-hop SC pathways naturally emerge from the multilayer information propagation in GPN. We predicted the individual differences in FC network based on SC network via multilayer GPN and results indicate that multilayer GPN incorporating effects of multi-hop indirect SCs greatly enhances the ability to predict individual FC network. Furthermore, the SC-FC relationship evaluated via the prediction accuracy is negatively correlated with the functional gradient, suggesting that the SC-FC relationship gradually uncouples along the functional hierarchy spanning from unimodal to transmodal cortex. We also revealed important intermediate brain regions along multi-hop SC pathways involving in the individual SC-FC relationship. These results suggest that multilayer GPN can serve as a method to establish individual SC-FC relationship at the macroneuroimaging level.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    大脑扫描在整个大范围内获得,不同年龄的队列在建立规范的大脑老化图表方面促进了最新进展。这里,我们提出了一个关键问题,即与年龄相关的大脑轨迹的横断面估计值是否与直接从纵向数据中测量的值相似.我们表明,从横截面图脑图推断的与年龄相关的大脑变化可以大大低估纵向测量的实际变化。我们进一步发现,个体之间的大脑衰老轨迹显着不同,并且很难通过横截面估计的人口水平年龄趋势来预测。预测错误与神经影像学混淆和生活方式因素有关。我们的发现为纵向测量在确定大脑发育和衰老轨迹中的重要性提供了明确的证据。
    Brain scans acquired across large, age-diverse cohorts have facilitated recent progress in establishing normative brain aging charts. Here, we ask the critical question of whether cross-sectional estimates of age-related brain trajectories resemble those directly measured from longitudinal data. We show that age-related brain changes inferred from cross-sectionally mapped brain charts can substantially underestimate actual changes measured longitudinally. We further find that brain aging trajectories vary markedly between individuals and are difficult to predict with population-level age trends estimated cross-sectionally. Prediction errors relate modestly to neuroimaging confounds and lifestyle factors. Our findings provide explicit evidence for the importance of longitudinal measurements in ascertaining brain development and aging trajectories.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Meta-Analysis
    目标:家族性,产科,精神分裂症谱系障碍(SSD)的早期环境风险会改变正常的大脑发育,导致在症状发作之前形成特征性的脑缺陷模式。我们假设这些风险的潜在影响可能会增加青春期前儿童大脑与成人SSD缺陷模式的相似性。
    方法:我们使用了青少年大脑和认知发育研究收集的数据(ABCD;N=8,940,年龄=9.9±0.1岁,4,633/4,307M/F),包括N=727(年龄=9.9±0.1岁,376/351M/F)有SSD家族史的儿童,为了评估祖先SSD病史对大脑的不利影响,产前和围产期环境,和消极的早期生活环境。我们使用区域脆弱性指数(RVI)来衡量儿童大脑模式与成人SSD模式的一致性,该模式来自对病例对照差异的大型荟萃分析。
    结果:在有SSD家族史的儿童中,与传统的全脑和区域脑测量相比,RVI在祖先病史中捕获的差异明显更大。在有和没有SSD家族史的儿童中,与传统的大脑测量相比,RVI还捕获了与负面的产前和围产期环境以及早期生活经历相关的更多差异。
    结论:总之,在大多数儿童不会发展SSD的队列中,家族性,产前和围产期,早期发育风险可以改变成年SSD患者的大脑模式。与成人SSD模式的个体相似性可以提供在精神病或前驱症状发作之前遗传和发育风险对大脑影响的早期生物标志物。
    Familial, obstetric, and early-life environmental risks for schizophrenia spectrum disorder (SSD) alter normal cerebral development, leading to the formation of characteristic brain deficit patterns prior to onset of symptoms. We hypothesized that the insidious effects of these risks may increase brain similarity to adult SSD deficit patterns in prepubescent children.
    We used data collected by the Adolescent Brain Cognitive Development (ABCD) Study (N = 8940, age = 9.9 ± 0.1 years, 4307/4633 female/male), including 727 (age = 9.9 ± 0.1 years, 351/376 female/male) children with family history of SSD, to evaluate unfavorable cerebral effects of ancestral SSD history, pre/perinatal environment, and negative early-life environment. We used a regional vulnerability index to measure the alignment of a child\'s cerebral patterns with the adult SSD pattern derived from a large meta-analysis of case-control differences.
    In children with a family history of SSD, the regional vulnerability index captured significantly more variance in ancestral history than traditional whole-brain and regional brain measurements. In children with and without family history of SSD, the regional vulnerability index also captured more variance associated with negative pre/perinatal environment and early-life experiences than traditional brain measurements.
    In summary, in a cohort in which most children will not develop SSD, familial, pre/perinatal, and early developmental risks can alter brain patterns in the direction observed in adult patients with SSD. Individual similarity to adult SSD patterns may provide an early biomarker of the effects of genetic and developmental risks on the brain prior to psychotic or prodromal symptom onset.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    在这项工作中,我们扩展了卢瑟福等人介绍的规范模型库。,2022a,包括绘制结构表面积和大脑功能连通性的寿命轨迹的规范模型,使用两个独特的静息态网络地图集(Yeo-17和Smith-10)测量,以及用于将这些模型转移到新数据源的更新的在线平台。我们通过规范建模输出的特征与几个基准测试任务中的原始数据特征之间的头对头比较来展示这些模型的价值:质量单变量组差异测试(精神分裂症与对照),分类(精神分裂症与对照),和回归(预测一般认知能力)。在所有基准中,我们展示了使用规范建模特征的优势,在组差异测试和分类任务中显示出最强的统计显著性结果。我们打算为这些可访问的资源,以促进整个神经成像社区更广泛地采用规范建模。
    In this work, we expand the normative model repository introduced in Rutherford et al., 2022a to include normative models charting lifespan trajectories of structural surface area and brain functional connectivity, measured using two unique resting-state network atlases (Yeo-17 and Smith-10), and an updated online platform for transferring these models to new data sources. We showcase the value of these models with a head-to-head comparison between the features output by normative modeling and raw data features in several benchmarking tasks: mass univariate group difference testing (schizophrenia versus control), classification (schizophrenia versus control), and regression (predicting general cognitive ability). Across all benchmarks, we show the advantage of using normative modeling features, with the strongest statistically significant results demonstrated in the group difference testing and classification tasks. We intend for these accessible resources to facilitate the wider adoption of normative modeling across the neuroimaging community.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

公众号