Indirect approach

  • 文章类型: Journal Article
    背景:建立足够的维生素A和E的参考间隔(RI)对于诊断和预防缺乏至关重要。由于当前数据挖掘的蓬勃发展及其简单的适用性,更多的实验室正在使用间接方法建立RIs。我们的研究旨在使用四个间接数据挖掘程序(Bhattacharya,霍夫曼,Kosmic,和RefineR)用于维生素A和E。
    方法:收集8943个个体以建立RI。在使用不同的数据清洗步骤,并根据多元线性回归和方差成分分析检查这些数据是否应按年龄和性别进行划分后,使用特定的Excel电子表格或R软件包软件计算间接RI。
    结果:总共有2004年的记录合格。对于维生素A,获得的RI为(1.11-2.68)μmol/L,(1.13-2.70)µmol/L,(1.13-2.71)µmol/L,和(1.17-2.66)µmol/L使用Bhattacharya,霍夫曼,Kosmic和RefineR方法,分别。对于维生素E,这些间隔为(17.3-49.9)µmol/L(Bhattacharya),(17.3-48.9)µmol/L(霍夫曼),(19.6-50.3)µmol/L(Kosmic),和(19.4-50.9)µmol/L(RefineR)。在所有情况下,RIs具有可比性。
    结论:使用四种间接方法计算了维生素A和E的合适RIs,这些方法适用于我们人群的人口统计学特征。
    BACKGROUND: Establishing adequate reference intervals (RIs) for vitamins A and E is essential for diagnosing and preventing deficiencies. Due to the current boom in data mining and its easy applicability, more laboratories are establishing RIs using indirect methods. Our study aims to obtain RIs using four indirect data-mining procedures (Bhattacharya, Hoffmann, Kosmic, and RefineR) for vitamins A and E.
    METHODS: 8943 individuals were collected to establish the RIs. After using different data cleaning steps and checking whether these data should be divided according to age and gender based on multiple linear regression and variance component analyses, indirect RIs were calculated using specific Excel spreadsheets or R-packages software.
    RESULTS: A total of 2004 records were eligible. For vitamin A, the RIs obtained were (1.11 - 2.68) µmol/L, (1.13 - 2.70) µmol/L, (1.13 - 2.71) µmol/L, and (1.17 - 2.66) µmol/L using the Bhattacharya, Hoffmann, Kosmic and RefineR approaches, respectively. For vitamin E, these intervals were (17.3 - 49.9) µmol/L (Bhattacharya), (17.3 - 48.9) µmol/L (Hoffmann), (19.6 - 50.3) µmol/L (Kosmic), and (19.4 - 50.9) µmol/L (RefineR). In all cases, the RIs were comparable.
    CONCLUSIONS: Suitable RIs for vitamins A and E were calculated using four indirect methods that are suitable and adapted to our population\'s demographic characteristics.
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  • 文章类型: Journal Article
    确定参考间隔(RI)的直接方法并不总是可行的。这项研究旨在提供证据,证明可以应用真实世界数据(RWD)方法将一个人群中确定的游离甲状腺素RI转移到第二个人群中,提供执行多个RI确定的替代方案。
    两个数据集(美国,n=10,000;欧洲,n=10,000)是从现有的RWD创建的。描述性统计,对每个数据集产生密度图和累积分布,并进行比较.使用经验累积分布函数确定RI的下限和上限处的累积概率。根据这些概率,每个数据集的估计百分位数和两组百分位数之间的估计差异通过案例重采样自举获得.然后根据≤7.8%(个体间生物学变异性)的预定接受标准评估估计的差异。直接方法用于验证RWD方法。
    RWD方法为两个种群提供了相似的描述性统计(平均值:US=16.1pmol/L,欧洲=16.4pmol/L;中位数:US=15.4pmol/L,欧洲=15.8pmol/L)。RI上限和下限的估计百分位数之间的差异满足预定的接受标准,密度图和累积分布证明了种群的同质性。使用直接方法观察到类似的RI分布。
    这项研究提供了证据,证明RWD方法可用于将在一个种群中确定的RI转移到另一个种群。
    UNASSIGNED: The direct approach for determining reference intervals (RIs) is not always practical. This study aimed to generate evidence that a real-world data (RWD) approach could be applied to transfer free thyroxine RIs determined in one population to a second population, presenting an alternative to performing multiple RI determinations.
    UNASSIGNED: Two datasets (US, n = 10,000; Europe, n = 10,000) were created from existing RWD. Descriptive statistics, density plots and cumulative distributions were produced for each data set and comparisons made. Cumulative probabilities at the lower and upper limits of the RIs were identified using an empirical cumulative distribution function. According to these probabilities, estimated percentiles for each dataset and estimated differences between the two sets of percentiles were obtained by case resampling bootstrapping. The estimated differences were then evaluated against a pre-determined acceptance criterion of ≤7.8% (inter-individual biological variability). The direct approach was used to validate the RWD approach.
    UNASSIGNED: The RWD approach provided similar descriptive statistics for both populations (mean: US = 16.1 pmol/L, Europe = 16.4 pmol/L; median: US = 15.4 pmol/L, Europe = 15.8 pmol/L). Differences between the estimated percentiles at the upper and lower limits of the RIs fulfilled the pre-determined acceptance criterion and the density plots and cumulative distributions demonstrated population homogeneity. Similar RI distributions were observed using the direct approach.
    UNASSIGNED: This study provides evidence that a RWD approach can be used to transfer RIs determined in one population to another.
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  • 文章类型: Journal Article
    目的:建立中国儿童青少年维生素E的参考区间(RI)。
    方法:在第三方临床检验机构采用高效液相色谱法检测血清生育酚样品。使用来自中国多中心临床检验机构的实际数据,描述了维生素E水平的分布参数,并使用三种算法计算了RI。
    结果:共756,766例纳入分析,其中男性435561人,女性321205人。4岁以下婴儿的维生素E中位数最初增加,但随后下降;而4至11岁儿童的维生素E水平尽管年龄有所增长(约7.4-7.8mg/L),但仍保持相对稳定。青春期开始后,差异,相对于性别,逐渐变得明显,女性的维生素E水平中位数高于男性。不同地区、不同季节样本间维生素E水平差异无临床意义。基于期望最大化算法,我国0~18岁儿童维生素E的RI为4.5~11.1mg/L。霍夫曼法建立的RI为4.6-12.8mg/L。
    结论:维生素E的年龄和性别特异性RIs是通过间接方法确定的。由EM算法建立的RI可以用作基于现实世界数据建立RI的替代方案。
    OBJECTIVE: To establish the reference interval (RI) of vitamin E for Chinese children and adolescents.
    METHODS: Serum tocopherol samples were examined using high performance liquid chromatography in third-party clinical laboratory institutions. Using real-world data from multi-center clinical laboratory institutions in China, the distribution parameters of vitamin E levels were described and the RI was calculated using three algorithms.
    RESULTS: A total of 756,766 cases were included in the analysis, including 435,561 males and 321,205 females. The median of vitamin E in infants younger than 4 years of age initially increased but subsequently decreased; while its levels in children between 4 and 11 years of age remained relatively stable despite progressing in age (approximately 7.4-7.8 mg/L). After the start of puberty, the difference, relative to sex, gradually became apparent, and the median vitamin E levels in females was higher than in males. The differences of vitamin E levels between different regions and samples in different seasons had no clinical significance. The RI of vitamin E for children aged 0-18 years in China was 4.5-11.1 mg/L based on expectation-maximization algorithm. The RI established by the Hoffmann method was 4.6-12.8 mg/L.
    CONCLUSIONS: The age- and sex-specific RIs of vitamin E were established by an indirect approach. The RIs established by EM algorithms could be used as an alternative to establish RIs based on real-world data.
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  • 文章类型: Journal Article
    The aim of this study was to harmonize the criteria for the Bhattacharya indirect method Microsoft Excel Spreadsheet for reference intervals calculation to reduce between-user variability and use these criteria to calculate and evaluate reference intervals for eight analytes in two different years.
    Anonymized laboratory test results from outpatients were extracted from January 1st 2018 to December 31st 2019. To assure data quality, we examined the monthly results from an external quality control program. Reference intervals were determined by the Bhattacharya method with the St Vincent\'s hospital Spreadsheet firstly using original criteria and then using additional harmonized criteria defined in this study. Consensus reference intervals using the additional harmonized criteria were calculated as the mean of four users\' lower and upper reference interval results. To further test the operation criteria and robustness of the obtained reference intervals, an external user validated the Spreadsheet procedure.
    The extracted test results for all selected laboratory tests fulfilled the quality criteria and were included in the present study. Differences between users in calculated reference intervals were frequent when using the Spreadsheet. Therefore, additional criteria for the Spreadsheet were proposed and applied by independent users, such as: to set central bin as the mean of all the data, bin size as small as possible, at least three consecutive bins and a high proportion of bins within the curve.
    The proposed criteria contributed to the harmonization of reference interval calculation between users of the Bhattacharya indirect method Spreadsheet.
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  • 文章类型: Journal Article
    背景:受试者间生物学变异(CVg)是实验室实践中几个方面的重要参数,包括分析性能规范的设置,个性指数的增量检查和计算。使用模拟,我们比较了两种间接(数据挖掘)方法推导CVg的性能。
    方法:将期望均方(EMS)方法与Harris和Fraser提出的方法进行了比较。使用数值模拟,d非病理和病理人群之间平均值差异的百分比,CVi非病理分布的受试者内变异系数,f病理值的分数,在总共320个条件下,病理分布的CVi的相对增加是不同的,以检查与真实值相比对恢复的CVg的相对误差分数的影响。
    结果:比较两种方法,EMS和Harris和Fraser的方法在真实基础CVg的±0.20分数误差范围内,在158个条件和157个条件下产生了类似的性能,对于正态分布和对数正态分布,分别。据观察,EMS和Harris和Fraser的方法使用计算的CVi而不是实际的(“推定”)CVi表现得更好。在正态分布和对数正态分布之间,真实基础CVg的0.20分误差内的条件数没有显着差异。随着f值的减小,CVg的估计得到了改善,d和CViCVg。
    结论:本研究中包含的两种统计方法在所检查的模拟条件下显示出可靠的性能。
    BACKGROUND: Between-subject biological variation (CVg) is an important parameter in several aspects of laboratory practice, including setting of analytical performance specification, delta checks and calculation of index of individuality. Using simulations, we compare the performance of two indirect (data mining) approaches for deriving CVg.
    METHODS: The expected mean squares (EMS) method was compared against that proposed by Harris and Fraser. Using numerical simulations, d the percentage difference in the mean between the non-pathological and pathological populations, CVi the within-subject coefficient of variation of the non-pathological distribution, f the fraction of pathological values, and e the relative increase in CVi of the pathological distribution were varied for a total of 320 conditions to examine the impact on the relative fractional of error of the recovered CVg compared to the true value.
    RESULTS: Comparing the two methods, the EMS and Harris and Fraser\'s approaches yielded similar performance of 158 conditions and 157 conditions within ± 0.20 fractional error of the true underlying CVg, for the normal and lognormal distributions, respectively. It is observed that both EMS and Harris and Fraser\'s method performed better using the calculated CVi rather than the actual (\'presumptive\') CVi. The number of conditions within 0.20 fractional error of the true underlying CVg did not differ significantly between the normal and lognormal distributions. The estimation of CVg improved with decreasing values of f, d and CViCVg.
    CONCLUSIONS: The two statistical approaches included in this study showed reliable performance under the simulation conditions examined.
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  • 文章类型: Journal Article
    背景:间接参考间隔和生物学变异研究严重依赖于统计方法来分离同一数据集中的病理和非病理亚群。认识到这一点,我们比较了8种单变量统计方法的性能,用于鉴定和排除来自病理亚群的数值.
    方法:检查的八种方法是:有和没有Box-Cox变换的Tukey规则;中位数绝对偏差;双中位数绝对偏差;高斯混合模型;范德洛(Vdl)方法1和2;和Kosmic方法。使用四种情况,包括对数正态分布和通过病理种群数量改变条件,中央位置,总共256个模拟混合种群的分布和比例。选择与真实的基础下部和上部参考间隔的±0.05分数误差的性能标准。
    结果:总体而言,Kosmic方法是一个突出的方法,在可接受的误差范围内的场景数量最多,后跟Vdl方法1和Tukey规则。在对数正态分布数据的情况下,Kosmic和Vdl方法1似乎可以更好地区分非病理参考人群。当病理亚群的比例和传播较高时,统计排除的表现大大恶化。
    结论:重要的是,实验室在分析之前使用先验定义的临床标准来最小化数据集中病理亚群的比例。然后应仔细检查所策划的数据集,以便可以应用适当的统计方法。
    BACKGROUND: Indirect reference intervals and biological variation studies heavily rely on statistical methods to separate pathological and non-pathological subpopulations within the same dataset. In recognition of this, we compare the performance of eight univariate statistical methods for identification and exclusion of values originating from pathological subpopulations.
    METHODS: The eight approaches examined were: Tukey\'s rule with and without Box-Cox transformation; median absolute deviation; double median absolute deviation; Gaussian mixture models; van der Loo (Vdl) methods 1 and 2; and the Kosmic approach. Using four scenarios including lognormal distributions and varying the conditions through the number of pathological populations, central location, spread and proportion for a total of 256 simulated mixed populations. A performance criterion of ± 0.05 fractional error from the true underlying lower and upper reference interval was chosen.
    RESULTS: Overall, the Kosmic method was a standout with the highest number of scenarios lying within the acceptable error, followed by Vdl method 1 and Tukey\'s rule. Kosmic and Vdl method 1 appears to discriminate better the non-pathological reference population in the case of log-normal distributed data. When the proportion and spread of pathological subpopulations is high, the performance of statistical exclusion deteriorated considerably.
    CONCLUSIONS: It is important that laboratories use a priori defined clinical criteria to minimise the proportion of pathological subpopulation in a dataset prior to analysis. The curated dataset should then be carefully examined so that the appropriate statistical method can be applied.
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  • 文章类型: Journal Article
    受试者内生物变异(CVi)是实验室医学的一个基本方面,从序列结果的解释,参考间隔的划分和设置分析性能规格。直接比较了确定CVi的四种间接(数据挖掘)方法。
    使用四个参数模拟了5,000名患者的配对连续实验室结果,d病理和非病理人群之间均值差异的百分比,CVi非病理值的受试者内变异系数,f病理值的分数,和e病理分布的CVi的相对增加。这些参数导致总共128个排列。预期均方方法(EMS)的性能,中位数法,比较了Tukey离群值排除方法的结果比率方法和Tukey离群值排除方法的改进结果比率方法。
    在这项研究中检查的128种排列中,EMS方法表现最好,101/128个排列在“真实”模拟CVi的±0.20分数误差范围内,其次是结果比率法,用Tukey的排除法进行78/128排列。中位数法严重低估了CVi。使用Tukey规则修改的结果比率总体上表现最佳,其中114/128个排列在允许的误差范围内。
    本模拟研究表明,通过仔细选择统计方法,可以最大程度地减少病态人群异常值的影响。并且有可能恢复接近“真实”的潜在非病理群体的CVi值。这一发现为使用常规实验室数据库推导生物变异成分提供了进一步的证据。
    Within-subject biological variation (CV i ) is a fundamental aspect of laboratory medicine, from interpretation of serial results, partitioning of reference intervals and setting analytical performance specifications. Four indirect (data mining) approaches in determination of CV i were directly compared.
    Paired serial laboratory results for 5,000 patients was simulated using four parameters, d the percentage difference in the means between the pathological and non-pathological populations, CV i the within-subject coefficient of variation for non-pathological values, f the fraction of pathological values, and e the relative increase in CV i of the pathological distribution. These parameters resulted in a total of 128 permutations. Performance of the Expected Mean Squares method (EMS), the median method, a result ratio method with Tukey\'s outlier exclusion method and a modified result ratio method with Tukey\'s outlier exclusion were compared.
    Within the 128 permutations examined in this study, the EMS method performed the best with 101/128 permutations falling within ±0.20 fractional error of the \'true\' simulated CV i , followed by the result ratio method with Tukey\'s exclusion method for 78/128 permutations. The median method grossly under-estimated the CV i . The modified result ratio with Tukey\'s rule performed best overall with 114/128 permutations within allowable error.
    This simulation study demonstrates that with careful selection of the statistical approach the influence of outliers from pathological populations can be minimised, and it is possible to recover CV i values close to the \'true\' underlying non-pathological population. This finding provides further evidence for use of routine laboratory databases in derivation of biological variation components.
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  • 文章类型: Journal Article
    OBJECTIVE: Alkaline phosphatase (ALP) is a ubiquitous enzyme in humans that can be used for diagnosing childhood diseases. Infants have the highest rapid growth rate and are susceptible to metabolic bone diseases. In infants, ALP activities exhibit significant month-wise variations, and authoritative standards are lacking. The present study aimed to provide a reference for the diagnosis of diseases related to abnormal ALP activities in infants.
    METHODS: This study included 24,618 samples collected from infants aged 0-12 months from three medical centers in Chongqing, China. Samples of infants diagnosed with diseases that may affect ALP activity have been exclude. ALP activity was analyzed using an automatic biochemical analyzer. A percentile curve for ALP activity in male and female infants was constructed using MATLAB, and the skewness-median-coefficient of variation method was employed for curve fitting.
    RESULTS: ALP activity in male and female infants peaked at 0-4 months; the peak appeared at 1-2 months and declined gradually thereafter. After 4-5 months of age, the ALP activities declined further, with the lowest values observed at 11-12 months of age. A comparison between the data from this study and a those from a published German study indicates that Chinese infants exhibited peak ALP activity later and subsequent decline greater than German infants.
    CONCLUSIONS: A percentile curve was constructed for month-wise ALP activity in male and female infants, which could provide a reference for diagnosing diseases related to abnormal ALP activity in infants.
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  • 文章类型: Journal Article
    BACKGROUND: Acromioclavicular joint arthritis is a relatively common source of shoulder pain. The treatment options consist of conservative management and operative intervention depending on the severity and duration of the disease. Distal clavicle excision is the standard operative treatment and can be performed through either open or arthroscopic techniques. The purpose of this study was to evaluate the functional outcome of arthroscopic resection of the distal clavicle.
    METHODS: This was a prospective study, conducted in a group of 50 patients in the Post-Gra-duate Department of Orthopaedics, Govt. Medical College Srinagar, from July 2015 to July 2019 with cases followed for a minimum of 3 years.
    RESULTS: The mean UCLA score improved from 13.2 preoperatively to 29.56 at final follow-up. An excellent result was seen in 10 patients (20%), good in 34 (68%), fair in 3 (6%) and poor in 3 (6%) patients. Overall 88% of the patients achieved excellent or good results and 94% were satisfied. Persistent pain and excessive intraoperative bleeding were the most common complications in our study.
    CONCLUSIONS: 1. Distal clavicle excision through an indirect or subacromial approach is a safe and effective procedure with very few complications. 2. The subacromial approach gives the added advantage of evaluating any glenohumeral joint and subacromial pathology. 3. This procedure is associated with less pain and improved cosmesis in comparison to open procedures.
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  • 文章类型: Journal Article
    Of the various methods available for high-performance liquid chromatography separation of enantiomers (of e.g. amino acids and amino group containing compounds) by the pre-column derivatization approach, use of Marfey\'s reagent has been most successful with continued application since its introduction in 1984. The reagent is prepared from difluoro dinitro benzene by nucleophilic substitution of one of its F atoms by l-alanine amide. There is flexibility to prepare several chiral variants (by substituting the F atom with different chiral auxiliaries) and to tailor the hydrophobicity and resolution, ultimately, of the diastereomeric derivatives. The present paper assesses and reviews applications of Marfey\'s reagent and its chiral variants (i.e. other FDNP reagents) for enantioseparation of certain amino group containing drugs/amino acids, and to provide some case studies on enantiomeric separations that are important for the pharmaceutical industry. Various explanations for separation mechanism and elution order using FDNP reagents are included and the question of the configuration of the corresponding enantiomer using an indirect approach has also been addressed.
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