In silico study

在硅研究
  • 文章类型: Journal Article
    全球多因素健康综合征之一是糖尿病,其增长速度令人不安。α-葡萄糖苷酶的抑制作用,一种催化肠道淀粉水解的酶,是控制与2型糖尿病相关的高血糖的一种有用的治疗方法。发现α-葡萄糖苷酶抑制剂,一些2-肼基-4-噻唑烷酮杂化物(3a-e)是通过新的一锅反应程序合成的。接下来,它们的化学结构通过1HNMR证实,13CNMR,和FT-IR光谱,和元素分析技术。然后,评价标题化合物的α-葡萄糖苷酶抑制活性。其中,与阿卡波糖作为药物相比,衍生物3b和3c对α-葡萄糖苷酶的活性最高。最具活性的衍生物(3b)的酶动力学研究表明竞争性抑制。最后,完成了分子建模研究,以描述最有效的化合物(3b和3c)与α-葡萄糖苷酶的重要相互作用。
    One of the multifactorial worldwide health syndromes is diabetes mellitus which is increasing at a disturbing rate. The inhibition of α-glucosidase, an enzyme that catalyzes starch hydrolysis in the intestine, is one helpful therapeutic approach for controlling hyperglycemia related to type-2 diabetes. To discover α-glucosidase inhibitors, some 2-hydrazolyl-4-thiazolidinone hybrids (3a-e) were synthesized from new one-pot reaction procedures. Next, their chemical structures were confirmed by 1H NMR, 13C NMR, and FT-IR spectra, and elemental analysis technique. Then, the α-glucosidase inhibitory activity of the titled compounds was evaluated. Among them, derivatives 3b and 3c revealed the highest activity against α-glucosidase compared to acarbose as a drug. Enzyme kinetic studies of the most active derivative (3b) indicated a competitive inhibition. Finally, molecular modeling studies were accomplished to describe vital interactions of the most potent compounds (3b and 3c) with the α-glucosidase enzyme.
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  • 文章类型: Journal Article
    草药自古以来就被用作药物,人们发现人体对草药的反应很好。在四氧嘧啶诱导的糖尿病大鼠范例的当前研究中,对丁苷的作用进行了研究。将总共30只Wistar大鼠随机分为以下组(n=6):I-正常;II-四氧嘧啶诱导的(50mg/kg);III-四氧嘧啶+丁丁25mg/kg;IV-四氧嘧啶+丁丁50mg/kg;V-丁丁本身50mg/kg。各种糖尿病参数(血糖,胰岛素,HbA1c),血脂谱,炎性(TNF-α,IL-1β,IL-6和NF-κB),抗氧化酶(CAT,SOD和GSH),氧化应激指标(MDA),凋亡标志物(caspase-3),肝标志物(ALT和AST),并评估了组织病理学变化。此外,进行分子对接和动力学以评估丁香与靶蛋白的相互作用。Butin治疗,在两种剂量下,显著恢复糖尿病大鼠的生化指标和胰腺组织病理学。它有效地调节血液参数,脂质分布,炎症标志物,凋亡,抗氧化酶活性,氧化应激,和肝脏标志物。分子对接显示,布丁与caspase-3(1NME)等蛋白质结合,NF-κB(1SVC),和血清胰岛素(4IBM)的结合亲和力为-7.4,-6.5和-8.2kcal/mol,分别。分子动力学模拟进一步表明,布丁诱导这些蛋白质的显着构象变化。Butin通过恢复生化平衡对四氧嘧啶诱导的糖尿病大鼠表现出潜在的作用,减少炎症,保护胰腺组织.其与参与细胞凋亡和炎症的关键蛋白的结合突出了其在糖尿病管理中的治疗潜力。
    Herbs have been used as medicines since antiquity, and it has been discovered that the human body responds well to herbal remedies. Research on the effect of butin was conducted in the current study in the alloxan-induced diabetic rat paradigm. A total of 30 Wistar rats were randomly assigned into the following groups (n = 6): I-Normal; II-Alloxan-induced (50 mg/kg); III-Alloxan + butin 25 mg/kg; IV-Alloxan + butin 50 mg/kg; V-Butin per se 50 mg/kg. Various diabetic parameters (blood glucose, insulin, HbA1c), lipid profile, inflammatory (TNF-α, IL-1β, IL-6 and NF-κB), antioxidant enzymes (CAT, SOD and GSH), oxidative stress indicators (MDA), apoptosis marker (caspase-3), hepatic markers (ALT and AST), and histopathological changes were assessed. Additionally, molecular docking and dynamics were performed to evaluate the interaction of butin with target proteins. Butin treatment, at both doses, significantly restored biochemical parameters and preserved pancreatic histopathology in diabetic rats. It effectively modulated blood parameters, lipid profiles, inflammatory markers, apoptosis, antioxidant enzyme activity, oxidative stress, and hepatic markers. Molecular docking revealed that butin binds to proteins such as caspase-3 (1NME), NF-κB (1SVC), and serum insulin (4IBM) with binding affinities of - 7.4, - 6.5, and - 8.2 kcal/mol, respectively. Molecular dynamics simulations further suggested that butin induces significant conformational changes in these proteins. Butin exhibits potential effects against alloxan-induced diabetic rats by restoring biochemical balance, reducing inflammation, and protecting pancreatic tissue. Its binding to key proteins involved in apoptosis and inflammation highlights its therapeutic potential in diabetes management.
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  • 文章类型: Journal Article
    目的:合成20个6-硝基-4-取代喹唑啉类化合物。材料和方法:评价新衍生物的表皮生长因子受体(EGFR)抑制活性。评估了最有效的衍生物对结肠癌和肺癌细胞的细胞毒性,除了正常的成纤维细胞。结果与讨论:与吉非替尼相比,化合物6c显示出优于几乎相等的细胞毒性,它还显示了良好的安全性。除了诱导细胞凋亡外,化合物6c还在G2/M期引起细胞周期停滞。对最具活性的化合物进行了分子对接研究,以了解它们在EGFR酶活性位点的结合模式,除了ADME预测它们的理化性质和药物相似度。
    [方框:见正文]。
    Aim: Twenty compounds of 6-nitro-4-substituted quinazolines were synthesized.Materials & methods: The new derivatives were evaluated for their epidermal growth factor receptor (EGFR) inhibitory activity. The most potent derivatives were assessed for their cytotoxicity against colon cancer and lung cancer cells, in addition to normal fibroblast cells.Results & discussion: compound 6c showed a superior to nearly equal cytotoxicity in comparison to gefitinib, it also revealed a good safety profile. Compound 6c caused a cell cycle arrest at G2/M phase in addition to induction of apoptosis. A molecular docking study was conducted on the most active compounds to gain insights of their binding mode in the active site of EGFR enzyme besides ADME prediction of their physicochemical properties and drug likeness profile.
    [Box: see text].
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  • 文章类型: Journal Article
    为了抗击结核病,DprE1,由于其较小的尺寸和膜位置,是新型抗结核药的具有挑战性的靶标,一直是研究的重点。DprE1催化DPR转化为KetoriboseDPX,苯并噻嗪酮成为抑制DprE1的有效药效团。临床试验药物如BTZ043、BTZ038、PBTZ169和TMC-207已显示出作为DprE1抑制剂的有希望的结果。本研究采用吡唑并吡啶的药效基团作图,二硝基苯甲酰胺,和苯并噻嗪酮衍生物,以确定引发生物反应的关键特征。苯并噻嗪酮(配体代码:73)作为参考配体出现,适应度评分为3.000。ROC分析验证了药效基团的优异评分为0.71。要建立3DQSAR模型,探索了一系列苯并噻嗪酮同属衍生物。该模型表现出强劲的性能,标准偏差为0.1531,训练集(R2)值的相关系数为0.9754,测试集Q2值的相关系数为0.7632,表明具有强大的预测能力。等高线图指导了新型苯并噻嗪酮衍生物的设计,强调立体,静电,疏水,H-键受体,和结构-活性关系的H-键供体基团。针对PDBID的对接研究:4NCR表现出良好的分数,通过RMSD值的对接验证支持对接结果的可靠性。这种全面的方法有助于设计具有潜在抗结核特性的新型苯并噻嗪酮衍生物,有助于开发新型抗结核药物,这些药物对根除结核病至关重要。
    In the quest to combat tuberculosis, DprE1, a challenging target for novel anti-tubercular agents due to its small size and membrane location, has been a focus of research. DprE1 catalyzes the transformation of DPR into Ketoribose DPX, with Benzothiazinone emerging as a potent pharmacophore for inhibiting DprE1. Clinical trial drugs such as BTZ043, BTZ038, PBTZ169, and TMC-207 have shown promising results as DprE1 inhibitors. This study employed pharmacophore mapping of Pyrazolopyridine, Dinitrobenzamide, and Benzothiazinone derivatives to identify crucial features for eliciting a biological response. Benzothiazinone (Ligand code: 73) emerged as a reference ligand with a fitness score of 3.000. ROC analysis validated the pharmacophore with an excellent score of 0.71. To build a 3D QSAR model, a series of Benzothiazinone congeneric derivatives were explored. The model exhibited strong performance, with a standard deviation of 0.1531, a correlation coefficient for the training set (R2) value of 0.9754, and a correlation coefficient for test set Q2 value of 0.7632, indicating robust predictive capabilities. Contour maps guided the design of novel benzothiazinone derivatives, emphasizing steric, electrostatic, hydrophobic, H-bond acceptor, and H-bond donor groups for structure-activity relationships. Docking studies against PDB ID: 4NCR demonstrated favorable scores, with interactions aligning well with the in-built ligand 26 J. Docking validation via RMSD values supported the reliability of the docking results. This comprehensive approach aids in the design of novel benzothiazinone derivatives with potential anti-tubercular properties, contributing to the development of novel anti-tubercular agents which can be pivotal in the eradication of tuberculosis.
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  • 文章类型: Journal Article
    背景:通过在纸张或厘米纸(CP)上进行临床检查得出的腿部长度差异(LLD)的阈值是否涉及配备有髋关节假体的肢体,尚不清楚。因此,我们进行了一项前瞻性的计算机研究,以便:(1)确定LLD在不同的理想和“退化”临床情况下的临床测量的可重复性和灵敏度,(2)确定人眼在临床上能够检测长度不等的阈值,(3)确定使用刻度支撑(厘米纸)是否提高了临床测量阈值。
    目的:我们的假设是,以厘米为支撑的临床测量将提高临床测量的准确性。
    方法:这是一项计算机模拟研究,这个实验是在一个人体模型上进行的。在人体模型上创建了不同的不等式,并在纸张或厘米纸(CP)上拍摄了-22至22mm的总共30个不等式。这是一项多中心研究,40个不同的读者我们要求读者在一个月后进行第二次测量。我们评估了观察者间和观察者内的再现性。相对于金标准,计算在3mm和5mm阈值处的错误率。最后,我们确定了分别有75%和95%的测量值正确的阈值.
    结果:共进行了4140次测量,并与黄金标准进行了比较。阈值为75%的测量精度,LLD检测阈值在厘米纸上为2.8mm,在纸上为4.5mm。具有95%准确测量的阈值,LLD检测阈值在厘米纸上为3.4mm,在纸上为5.2mm。观察者之间的共识(由Krippendorff的广义Kappa对40名观察者进行的总体评估)在CP上为0.86(95%置信区间(CI95%)=0.79至0.92),在表格上为0.71(CI95%=0.63至0.79)。通过进行2次测量的观察者之间的组内相关系数评估的观察者内部协议在CP上的中值(IQR)为0.96(0.94至0.99),在纸张上为0.90(0.83至0.94)。
    结论:患者病床上的临床检测阈值接近5mm。用刻度厘米纸可以进行更精确的测量。在实际情况下对患者进行的日常实践研究将证实我们的结果。
    方法:III;Silico研究中的前瞻性诊断比较。
    BACKGROUND: The threshold of a Leg Length Discrepancy (LLD) by clinical examination on a sheet or centimeter paper (CP) is not known precisely whether or not it concerns limbs equipped with a hip prosthesis. We therefore conducted a prospective in silico study in order to: (1) determine the reproducibility and sensitivity of the clinical measurement of the LLD in different ideal and \"degraded\" clinical situations, (2) determine the threshold from which the human eye is capable of detecting a length inequality in clinic, (3) to determine whether the use of a graduated support (centimeter paper) improves the clinical measurement threshold.
    OBJECTIVE: Our hypothesis was that clinical measurement on a centimeter support would improve clinical measurement accuracy.
    METHODS: This was an in silico study, the experiment was conducted on a mannequin. Different inequalities were created on a mannequin and photographed with a total of 30 inequalities from -22 to +22 mm on sheet or centimeter paper (CP). This was a multicenter study, with 40 different readers. We asked the readers to make a second measurement one month later. We evaluated the inter- and intra-observer reproducibility. The error rate at the threshold of 3 mm and 5 mm were calculated versus the gold standard. Finally, we determined at which thresholds respectively 75% and 95% of the measurements were correct.
    RESULTS: A total of 4140 measurements were performed and compared to the gold standard. With a threshold of 75% accurate measurement, the LLD detection threshold was 2.8 mm on centimeter paper and 4.5 mm on sheet. With a threshold of 95% accurate measurement, the LLD detection threshold was 3.4 mm on centimeter paper and 5.2 mm on sheet. Interobserver agreement (assessed overall on the 40 observers by Krippendorff\'s generalized Kappa) was 0.86 (95% confidence interval (CI95%) = 0.79 to 0.92) on CP and 0.71 (CI95% = 0.63 to 0.79) on sheet. Intra-observer agreement assessed by the intraclass correlation coefficient among observers who made 2 measurements had a median value (IQR) of 0.96 (0.94 to 0.99) on CP and 0.90 (0.83 to 0.94) on sheet.
    CONCLUSIONS: The clinical detection threshold on sheet at the patient\'s bed appears close to 5 mm. A more precise measurement is possible with graduated centimeter paper. A study in daily practice on patients in real situations would confirm our results.
    METHODS: III; prospective diagnostic comparative in Silico study.
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  • 文章类型: Journal Article
    细菌对抗微生物剂的耐药性的出现对治疗细菌性疾病的有效性构成了严重威胁。导致抗菌素耐药性的一个主要因素是生物膜的形成,由群体感应(QS)驱动。QS抑制抑制QS信号通路,阻碍细胞间的通讯.这项研究的重点是N-(嘧啶-2-基)烷基/芳基酰胺衍生物,设计的,合成,并表征其QS抑制作用。在合成的化合物(3a-j)中,化合物3b,3d,和3h表现出最高的QS抑制活性,抑制区分别为17.66±6.17、14.00±6.24和17.33±0.66mm,分别。Further,分子对接研究揭示了-8.4和-6.3kcal/mol之间的结合亲和力,表明与靶蛋白的强相互作用。此外,分子动力学模拟证实了化合物3b和3h的蛋白质-配体复合物的稳定性。此外,采用计算机内方法来预测这些分子的物理化学性质。总的来说,这些发现强调了N-(嘧啶-2-基)烷基/芳基酰胺衍生物作为QS抑制剂的潜力,为开发替代抗菌疗法提供了新的视角。
    The emergence of bacterial resistance to antimicrobial agents poses a serious threat to the effectiveness of treating bacterial illnesses. A major factor contributing to antimicrobial resistance is biofilm formation, driven by quorum sensing (QS). QS suppression inhibits the QS signaling pathway, obstructing cell-to-cell communication. This study focuses on N-(pyrimidin-2-yl)alkyl/arylamide derivatives, which were designed, synthesized, and characterized for their QS inhibitory effects. Among the synthesized compounds (3a-j), compounds 3b, 3d, and 3h exhibited the highest QS inhibitory activity, with inhibition zones of 17.66 ± 6.17, 14.00 ± 6.24, and 17.33 ± 0.66 mm, respectively. Further, molecular docking studies revealed binding affinities between - 8.4 and - 6.3 kcal/mol, indicating strong interactions with the target proteins. Moreover, molecular dynamic simulations confirmed the stability of the protein-ligand complexes for compounds 3b and 3 h. Additionally, in-silico methods were employed to predict the physicochemical properties of these molecules. Overall, these findings underscore the potential of N-(pyrimidin-2-yl)alkyl/arylamide derivatives as QS inhibitors, offering a new perspective for developing alternative antimicrobial therapies.
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  • 文章类型: Journal Article
    在本文中,我们介绍了两种已知的磺酰肼(1和2)及其新的磺酰腙衍生物(9-20)的合成和表征,以及对其对人肺(A549)和人乳腺(MCF-7)癌细胞系的细胞毒性特性的体外和计算机研究。通过多步反应首次合成了高产率的目标化合物(9-20),通过元素分析和各种光谱技术证实了它们的结构,包括FT-IR,1H-,和13C-NMR。使用3-(4,5-二甲基噻唑-2-基)-2,5-二苯基四唑溴化物(MTT)方法,在200、100、50和25µM的浓度下对选定的癌细胞系测定了本研究中这些化合物(1、2和9-20)的抗增殖谱。除化合物1和2外,其他化合物(9-20)在低于200µM的浓度下表现出细胞毒性活性。新合成的化合物(9-20)在微摩尔水平上表现出抗增殖活性,A549细胞系的IC50值在29.59-176.70μM的范围内,MCF-7细胞系的IC50值在27.70-170.30μM的范围内。在这些化合物中,与参比药物顺铂相比,化合物15(对A549细胞系的IC50=29.59μM,对MCF-7细胞系的IC50=27.70μM)对这两种癌细胞系显示出最高的细胞毒活性(对A549细胞系的IC50=22.42μM,对MCF-7细胞系的IC50=18.01μM)。从对接模拟来看,建立化合物的合理结合模式,我们注意到,与其他化合物相比,化合物15对雌激素受体β(ERbeta)具有最高的亲和力(-6.8508kcal/mol),表明有希望的ERbeta结合潜力。大多数化合物都遵循Lipinski的5条规则,具有可接受的logP值。此外,所有患者均有混合的胃肠道吸收和有限的血脑屏障通透性.总的来说,我们的研究提出了新的磺酰腙作为一类潜在的抗癌药物。
    In this paper, we present the synthesis and characterization of two known sulfonyl hydrazides (1 and 2) and their new sulfonyl hydrazone derivatives (9-20), as well as in vitro and in silico investigations of their cytotoxic properties against human lung (A549) and human breast (MCF-7) cancer cell lines. The target compounds (9-20) obtained in high yields were synthesized for the first time by a multi-step reaction, and their structures were confirmed by elemental analysis and various spectral techniques, including FT-IR, 1H-, and 13C-NMR. The antiproliferative profiles of these compounds (1, 2, and 9-20) in this study were determined at concentrations of 200, 100, 50, and 25 µM against selected cancer cell lines for 72 h using the 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide (MTT) method. Except for compounds 1 and 2, other compounds (9-20) demonstrated cytotoxic activity at concentrations lower than 200 µM. The newly synthesized compounds (9-20) demonstrated antiproliferative activities at a micromolar level, with IC50 values in the range of 29.59-176.70 μM for the A549 cell line and 27.70-170.30 μM for the MCF-7 cell line. Among these compounds, compound 15 (IC50 = 29.59 μM against A549 cell line and IC50 = 27.70 μM against MCF-7 cell line) showed the highest cytotoxic activity against these two cancer cell lines compared to the reference drug cisplatin (IC50 = 22.42 μM against A549 cell line and IC50 = 18.01 μM against MCF-7 cell line). From docking simulations, to establish a plausible binding mode of compounds, we noticed that compound 15 demonstrated the highest affinity (-6.8508 kcal/mol) for estrogen receptor-beta (ERbeta) compared to others, suggesting promising ERbeta binding potential. Most compounds followed Lipinski\'s rule of five, with acceptable logP values. Additionally, all had mixed gastrointestinal absorption and limited blood-brain barrier permeability. Overall, our study proposed new sulfonyl hydrazones as a potential class of anticancer agents.
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  • 文章类型: Journal Article
    本研究首次探讨了化学组成和抗氧化剂,抗炎,和细胞毒性活性的Peperomialeptostachya叶油。通过加氢蒸馏获得黄色油,产率为0.1%(w/w)。GC-MS分析显示66种化合物,占石油的99.6%。倍半萜烃占主导地位(70.4%),其次是单萜烃(13.2%),含氧倍半萜(12.4%),非萜类化合物(2.0%),和含氧单萜(1.6%)。主要成分包括雌二醇D(25.1%),(E)-石竹烯(17.4%),双环红(6.6%),α-pine烯(6.2%),和β-pine烯(4.7%)。通过1,1-二苯基-2-吡啶酰肼(DPPH)清除试验评估抗氧化能力,IC50值>100µg/mL。使用MTT测定法定量RAW264.7细胞中脂多糖诱导的一氧化氮产生的抑制作用,显示IC50值为15.15±0.68µg/mL。此外,对SK-LU-1细胞系生长的细胞毒性作用的评价使用磺罗丹明B试验,导致的IC50值为37.45±2.43μg/mL。在所分析的该油的生物活性中,抗炎活性是显著的。通过使用计算模型,选择精油中主要的次生代谢产物作为与环氧合酶-2相互作用分析的候选物,环氧合酶-2是一种参与炎症反应的酶.我们的发现表明,leptostachya叶油可以作为天然化合物的潜在来源,在治疗炎症中具有预期的治疗作用。
    This study is the first to investigate the chemical composition and antioxidant, anti-inflammatory, and cytotoxic activities of Peperomia leptostachya leaf oil. A yellow oil was obtained through hydro-distillation, with a yield of 0.1% (w/w). The GC-MS analysis revealed 66 compounds, constituting 99.6% of the oil. Sesquiterpene hydrocarbons predominated (70.4%), followed by monoterpene hydrocarbons (13.2%), oxygenated sesquiterpenes (12.4%), non-terpenic compounds (2.0%), and oxygenated monoterpenes (1.6%). Major constituents included germacrene D (25.1%), (E)-caryophyllene (17.4%), bicyclogermacrene (6.6%), α-pinene (6.2%), and β-pinene (4.7%). The assessment of antioxidant capacity via 1,1-diphenyl-2-picrylhydrazyl (DPPH) scavenging assay yielded a weak effect, with an IC50 value > 100 µg/mL. The inhibition of lipopolysaccharide-induced nitric oxide production in RAW 264.7 cells was quantified using the MTT assay, showing an IC50 value of 15.15 ± 0.68 µg/mL. Furthermore, cytotoxic effects on SK-LU-1 cell line growth were evaluated using the sulforhodamine B assay, resulting in an IC50 value of 37.45 ± 2.43 μg/mL. The anti-inflammatory activity was notable among the analyzed bioactivities of this oil. By employing a computational model, the predominant secondary metabolites in the essential oil were selected as candidates for interaction analysis with cyclooxygenase-2, an enzyme implicated in the inflammatory response. Our findings suggest that P. leptostachya leaf oil could serve as a potential source of natural compounds with prospective therapeutic effects in treating inflammatory conditions.
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  • 文章类型: Journal Article
    目的:我们的研究旨在评估盐酸普萘洛尔(PNL)的抗真菌作用。方法:通过薄膜水合制备油质体(OL),并评估包封率(EE%),粒度(PS),多分散指数(PDI),zeta电位(ZP),Q6h后药物释放量(%)。结果:最佳OL呈圆形,具有最佳特征。离体渗透和共聚焦激光扫描显微镜检查证实了PNL负载的OL凝胶的延长释放和良好沉积。计算机评估证明PNL与OLs'成分具有良好的稳定性。对载有PNL的OL-凝胶的体内评估显示出针对白色念珠菌的良好抗真菌作用,并且具有良好的安全性。结论:这项工作强调了PNL负载的OLs凝胶作为念珠菌阴道感染的潜在治疗方法的潜力。
    [方框:见正文]。
    Aim: Our investigation aims to estimate the antifungal effect of propranolol hydrochloride (PNL). Methods: Oleosomes (OLs) were fabricated by thin-film hydration and evaluated for entrapment efficiency (EE%), particle size (PS), polydispersity index (PDI), zeta potential (ZP), and amount of drug released after 6 h Q6h (%). Results: The optimal OL showed a rounded shape with optimum characteristics. The ex-vivo permeation and confocal laser scanning microscopy verified the prolonged release and well deposition of PNL-loaded OLs-gel. The in-silico assessment demonstrated the good stability of PNL with OLs\' ingredients. In vivo evaluations for PNL-loaded OLs-gel showed a good antifungal impact against Candida albicans with good safety. Conclusion: This work highlights the potential of PNL-loaded OLs-gel as a potential treatment for candida vaginal infection.
    [Box: see text].
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  • 文章类型: Journal Article
    世界卫生组织已将不孕症视为国际公共卫生问题。不育症影响近七分之一的夫妇,男性占不育症病例的50%。男性不育症和一些癌症如睾丸生殖细胞之间有明显的联系,前列腺癌和结肠癌。两种可能性支持这一发现:1)癌症治疗可以影响生育因素2)癌症患者不育基因的遗传特征已经改变。尽管以前发表的研究大多集中在第一个因素上,尚未有文章证实遗传因素的作用。在这项计算机模拟研究中,我们收集了大量与不孕症有关的基因(n=17703)。这些基因是从男性不育的NGS小组测试和综合文献综述或在线数据库中收集的。从cBioPortal癌症数据集下载前列腺腺癌基因组和转录组学原始数据。这包括494名前列腺癌患者,具有494个突变数据,489用CNA和493用RNAseqV2数据。使用cgdsr延伸包在R中提取TCGARNA-Seq原始数据,相对于正常样品具有±2的阈值。观察到的数据表明,男性不育基因已通过人类基因组分布。在这项研究的17703个分析基因中,在100%(n=493)患者中,OR9Q1,H4C6和PSG7等3种基因的基因组谱发生了约改变.在大多数患者(>98%)中,遗传改变与基因表达的改变有关。总之,这项研究表明,一些男性不育基因的基因组和转录组学模式在前列腺癌患者中显著改变,并提示遗传因素在癌症患者不育症的发生中可能起作用。我们的信息可以用作设计男性不育遗传数据库的来源。
    The World Health Organization has considered the infertility as an international public health problem. Infertility affect nearly 1 in 7 couples and male component contributes to 50% of infertility cases. There is a clear link between male infertility and some cancers such as testicular germ cell, prostate and colon cancers. Two possibilities support this finding: 1) Cancer treatments can affect the fertility factors 2) Genetic profile of infertility genes have been altered in cancer patients. Although the previously published researches have mostly focused on the first factor, no article has yet confirmed the role of genetic factors. In this in silico study, we collected the large number of genes (n = 17703) involved in infertility. These genes were collected from NGS panel tests of male infertility and comprehensive literature review or online data base. The Prostate Adenocarcinoma genomic and transcriptomics raw data were downloaded from the cBioPortal Cancer dataset. This included with 494 patients of Prostate Cancer with 494 mutation data, 489 with CNA and 493 with RNA seqV2 data. TCGA RNA-Seq raw data was extracted in R using the cgdsr extension package with a threshold of ±2 relative to normal samples. The observed data showed that male infertility genes have been distributed through the human genome. Among the 17703 analyzed genes of this study, the genomic profile of three genes including OR9Q1, H4C6 and PSG7 were changed approximately in 100% of (n = 493) patients. In most of patients (>98%), genetic alteration was related to change in gene expression. In conclusion, this study showed that the genomic and transcriptomics patterns of some male-infertility genes are notably altered in patients of prostate cancer and suggested a possible role of genetic factors in occurrence of infertility in cancer patients. Our information can be used as a source for the design of genetic database of male-infertility.
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