Hirshfeld surface analysis

Hirshfeld 曲面分析
  • 文章类型: Journal Article
    一种新的三维(3D)配位聚合物,即,聚[diaqua[μ5-2,2'-(1,3,5,7-四氧-1,2,3,5,6,7-六氢吡咯并[3,4-f]异吲哚-2,6-二基)二乙酸根]钡(II)],[Ba(C14H6N2O8)(H2O)2]n,(I),已通过Ba(NO3)2与N的微波辐照反应合成,N'-双(甘氨酰)均苯四甲酸二酰亚胺{BGPD,即,2,2'-(1,3,5,7-四氧-1,2,3,5,6,7-六氢吡咯并[3,4-f]异吲哚-2,6-二基)二乙酸,H2L}。通过单晶X射线衍射分析和粉末X射线衍射分析对标题化合物进行了结构表征,以及红外光谱。在(I)的晶体结构中,BaII离子由来自五个对称相关的L2-二阴离子和一个酰亚胺O原子的六个羧酸盐O原子进行九配位,还有两个水O原子。中心BaII离子的配位几何形状可以描述为球形盖方形反棱镜。配体的一个羧酸酯基团充当将BaII阳离子连接到一维多核二级结构单元(SBU)中的μ3桥。配体的另一个羧酸酯基团充当连接1DSBU的μ2桥,从而形成二维(2D)SBU。所得2DSBU经由配体的均苯四甲酸二酰亚胺部分作为间隔基延伸到3D框架中。3DBa框架可以简化为5连接的六方氮化硼网(bnn)拓扑。通过Hirshfeld表面分析进一步研究了3D框架中的分子间相互作用,结果表明,主要的相互作用是H。.O(45.1%),巴。..O(11.1%)和C。.H(11.1%),还有H...H(11.1%)触点。热稳定性,还研究了(I)的光致发光特性和紫外-可见吸收光谱。该配位聚合物表现出具有0.071量子产率和高热稳定性的荧光发射。
    A new three-dimensional (3D) coordination polymer, namely, poly[diaqua[μ5-2,2\'-(1,3,5,7-tetraoxo-1,2,3,5,6,7-hexahydropyrrolo[3,4-f]isoindole-2,6-diyl)diacetato]barium(II)], [Ba(C14H6N2O8)(H2O)2]n, (I), has been synthesized by the microwave-irradiated reaction of Ba(NO3)2 with N,N\'-bis(glycinyl)pyromellitic diimide {BGPD, namely, 2,2\'-(1,3,5,7-tetraoxo-1,2,3,5,6,7-hexahydropyrrolo[3,4-f]isoindole-2,6-diyl)diacetatic acid, H2L}. The title compound was structurally characterized by single-crystal X-ray diffraction analysis and powder X-ray diffraction analysis, as well as IR spectroscopy. In the crystal structure of (I), the BaII ion is nine-coordinated by six carboxylate O atoms from five symmetry-related L2- dianions and one imide O atom, as well as two water O atoms. The coordination geometry of the central BaII ion can be described as a spherical capped square antiprism. One carboxylate group of the ligand serves as a μ3-bridge linking the BaII cations into a one-dimensional polynuclear secondary building unit (SBU). Another carboxylate group of the ligand acts as a μ2-bridge connecting the 1D SBUs, thereby forming a two-dimensional (2D) SBU. The resulting 2D SBUs are extended into a 3D framework via the pyromellitic diimide moiety of the ligand as a spacer. The 3D Ba framework can be simplified as a 5-connected hexagonal boron nitride net (bnn) topology. The intermolecular interactions in the 3D framework were further investigated by Hirshfeld surface analysis and the results show that the prominent interactions are H...O (45.1%), Ba...O (11.1%) and C...H (11.1%), as well as H...H (11.1%) contacts. The thermal stability, photoluminescence properties and UV-Vis absorption spectra of (I) were also investigated. The coordination polymer exhibits a fluorescence emission with a quantum yield of 0.071 and high thermal stability.
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  • 文章类型: Journal Article
    通过1,3-偶极环加成法合成了螺-羟吲哚衍生物,并通过FT-IR进行了表征。1H,13CNMR和质谱技术。6d的单晶XRD进一步验证了化合物的形成。DFT计算表明化合物6d的反应性质。与5LAW的对接研究揭示了6d的最小结合能-10.83kcal/mol。此外,安全的口服生物利用度是通过物理化学,药代动力学,和毒性预测。合成化合物的抗癌分析显示了对A549细胞的实质性活性,值得注意的是,与标准阿霉素相比,6d的IC50值为8.13±0.66µM。还评估了图6d对L929健康细胞和A549的细胞毒性,显示了比健康细胞对A549的选择性。AO/EB染色方法显示A549细胞系中的早期凋亡细胞死亡呈剂量依赖性。
    The spiro-oxindole derivatives were synthesized via a 1,3-dipolar cycloaddition approach and characterized by FT-IR, 1H, 13C NMR and mass spectral techniques. The single crystal XRD of 6d further validates the formation of compounds. DFT calculations indicated the reactive nature of compound 6d. Docking studies with 5LAW disclosed the minimum binding energy of - 10.83 kcal/mol for 6d. Furthermore, safe oral bioavailability was ensured by the physicochemical, pharmacokinetic, and toxicity predictions. The anticancer analysis of synthesized compounds showed substantial activity against A549 cells, notably with an IC50 value of 8.13 ± 0.66 µM for 6d compared to standard doxorubicin. 6d was also evaluated for cytotoxicity against L929 healthy cells and A549, showing selectivity towards A549 than healthy cells. AO/EB staining method showed early apoptotic cellular death in the A549 cell line in a dose-dependent manner.
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  • 文章类型: Journal Article
    两个配位化合物的晶体结构,(乙酸-κO)(2,2'-联吡啶-κ2N,N\')(1,10-菲咯啉-κ2N,N')醋酸铜(II)六水合物,[Cu(C2H3O2)(C10H8N2)(C12H8N2)](C2H3O2)·6H2O或[Cu(bipy)(phen)Ac·6H2O,和(乙酸-κO)双(2,2'-联吡啶-κ2N,N\')醋酸铜(II)-醋酸-水(1/1/3),[Cu(C2H3O2)(C10H8N2)2](C2H3O2)·C2H4O2·3H2O或[Cu(bipy)2Ac]Ac·HAc·3H2O,据报道,并与先前发表的[Cu(phen)2Ac]Ac·7H2O的结构进行了比较(phen是1,10-菲咯啉,bipy代表2,2'-联吡啶,ac是乙酸盐,Hac是乙酸)。金属中心周围的几何形状是五配位的,但在所有三种情况下都高度扭曲。详细讨论了坐标数和几何失真,所有配合物都属于空间群P\\overline{1}。几何参数和Hirshfeld表面性质dnorm和曲率的分析提供了有关这些配合物中金属-配体相互作用的信息,并可以与类似的系统进行比较。
    The crystal structures of two coordination compounds, (acetato-κO)(2,2\'-bipyridine-κ2N,N\')(1,10-phenanthroline-κ2N,N\')copper(II) acetate hexahydrate, [Cu(C2H3O2)(C10H8N2)(C12H8N2)](C2H3O2)·6H2O or [Cu(bipy)(phen)Ac]Ac·6H2O, and (acetato-κO)bis(2,2\'-bipyridine-κ2N,N\')copper(II) acetate-acetic acid-water (1/1/3), [Cu(C2H3O2)(C10H8N2)2](C2H3O2)·C2H4O2·3H2O or [Cu(bipy)2Ac]Ac·HAc·3H2O, are reported and compared with the previously published structure of [Cu(phen)2Ac]Ac·7H2O (phen is 1,10-phenanthroline, bipy for 2,2\'-bipyridine, ac is acetate and Hac is acetic acid). The geometry around the metal centre is pentacoordinated, but highly distorted in all three cases. The coordination number and the geometric distortion are both discussed in detail, and all complexes belong to the space group P-1. The analysis of the geometric parameters and the Hirshfeld surface properties dnorm and curvedness provide information about the metal-ligand interactions in these complexes and allow comparison with similar systems.
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  • 文章类型: Journal Article
    在探索生成用于结晶海绵方法的金属有机骨架(MOFs)的结晶条件的过程中,两个离散的金属-有机络合物,即,水[2,4,6-三(吡啶-4-基)-1,3,5-三嗪]溴化锌(II),[Zn(C18H12N6)(H2O)]Br2和水[2,4,6-三(吡啶-4-基)-1,3,5-三嗪]氯化锌(II),遇到[Zn(C18H12N6)(H2O)]Cl2。正交晶系空间群Pnma的结构(编号62)在299K下获得溴化物同源物,在100K下获得氯化物同源物。溴化物同源物在从299冷却到100K时发生相变,产生具有四个结构域的晶体多晶型物,其表现出单斜P21/m空间群对称性(编号11),这源于构象变化。在所有观察到的结构中有助于晶体堆积的主要分子内接触是H。.H,Halide...H/H...Halide,C...H/H...C,N...H/H...N.Zn结合水和非Zn结合吡啶基N原子之间的分子内氢键是三维网络中的突出特征。非Zn结合的吡啶环和涉及卤化物配体的接触之间的芳族π-堆叠进一步稳定了晶体堆积。
    During the course of exploring crystallization conditions in generating metal-organic frameworks (MOFs) for use in the crystalline sponge method, two discrete metal-organic complexes, namely, aqua[2,4,6-tris(pyridin-4-yl)-1,3,5-triazine]zinc(II) bromide, [Zn(C18H12N6)(H2O)]Br2, and aqua[2,4,6-tris(pyridin-4-yl)-1,3,5-triazine]zinc(II) chloride, [Zn(C18H12N6)(H2O)]Cl2, were encountered. Structures in the orthorhombic space group Pnma (No. 62) for the bromide congener at 299 K and the chloride congener at 100 K were obtained. A phase transition for the bromide congener occurred upon cooling from 299 to 100 K, yielding a crystal polymorph with four domains that exhibits monoclinic P21/m space-group symmetry (No. 11), which arises from conformational changes. The main intramolecular contacts that contribute to the crystal packing in all observed structures are H...H, Halide...H/H...Halide, C...H/H...C, and N...H/H...N. Intramolecular hydrogen bonding between the Zn-bound water and non-Zn-bound pyridyl N atoms is a prominent feature within the three-dimensional networks. Aromatic π-stacking between the non-Zn-bound pyridine rings and contacts involving the halide ligands further stabilize the crystal packing.
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  • 文章类型: Journal Article
    标题化合物,C17H13BrN4O5是通过Cu2Br2催化的4-硝基-苯基-氧基-乙酸炔丙基醚和对溴苯基-叠氮化物之间的Meldal-Sharpless反应合成的,并通过X射线结构测定和1HNMR表征。mol-ecules,溴-苯基-三唑和硝基-苯基-氧基-乙酸酯片段几乎垂直取向,通过分子间C-H化学键和C-H化学键连接成三维网络(通过Hirshfeld表面分析确认),π-π和Br-π相互作用。
    The title compound, C17H13BrN4O5, was synthesized by a Cu2Br2-catalysed Meldal-Sharpless reaction between 4-nitro-phen-oxy-acetic acid propargyl ether and para-bromo-phenyl-azide, and characterized by X-ray structure determination and 1H NMR spectroscopy. The mol-ecules, with a near-perpendicular orientation of the bromo-phenyl-triazole and nitro-phen-oxy-acetate fragments, are connected into a three-dimensional network by inter-molecular C-H⋯O and C-H⋯N hydrogen bonds (confirmed by Hirshfeld surface analysis), π-π and Br-π inter-actions.
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  • 文章类型: Journal Article
    硝酸钍(IV)与2-[(4-苯基-1H-1,2,3-三唑-1-基)甲基]吡啶(L)反应得到(LH)2[Th(NO3)6]或(C14H13N4)2[Th(NO3)6](1),代替预期的混合配体络合物[Th(NO3)4L2],在1的质谱中检测到。在结构上,[Th(NO3)6]2-阴离子显示出icosa-六面体配位几何形状,并通过C-H-O氢键由LH阳离子连接。LH+阳离子通过N-H-N氢键相互作用。Hirshfeld表面分析表明,最重要的相互作用是O_H/H_O氢键相互作用,占55.2%的贡献。
    Reaction of thorium(IV) nitrate with 2-[(4-phenyl-1H-1,2,3-triazol-1-yl)meth-yl]pyridine (L) yielded (LH)2[Th(NO3)6] or (C14H13N4)2[Th(NO3)6] (1), instead of the expected mixed-ligand complex [Th(NO3)4 L 2], which was detected in the mass spectrum of 1. In the structure, the [Th(NO3)6]2- anions display an icosa-hedral coordination geometry and are connected by LH+ cations through C-H⋯O hydrogen bonds. The LH+ cations inter-act via N-H⋯N hydrogen bonds. Hirshfeld surface analysis indicates that the most important inter-actions are O⋯H/H⋯O hydrogen-bonding inter-actions, which represent a 55.2% contribution.
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  • 文章类型: Journal Article
    两种新的[1-(苯基-磺酰基)-1H-吲哚-2-基]甲胺衍生物,即,N-(3-甲氧基-苯基)-N-{[1-(苯基-磺酰基)-1H-吲哚-2-基]甲基-基}乙酰胺,C24H22N2O4S,(I),和N-(2,5-二-甲基-氧基-苯基-基)-N-{[1-(苯基-磺酰基)-1H-吲哚-2-基]甲基}苯磺酰胺,C29H26N2O6S2,(II),揭示了它们的吲哚环系统和磺酰基结合的苯环的几乎正交取向。磺酰基部分采用反面构象。对于这两种化合物,晶体堆积以C-H→O键为主[C→O=3.312(4)-3.788(8)。]II的结构表现出更大的数量,但这种类型的债券较弱。反平行吲哚系统的滑动π-π相互作用特定于I,而II的结构在吲哚部分的两个轴向侧传递两种C-H-π相互作用。这些发现与Hirshfeld表面分析的结果一致。对表面积的主要贡献与涉及H原子的接触有关。尽管II表现出更大比例的O_H/H_O触点(25.8对22.4%),它们中的大多数都相对较远,并与相应的范德华分离相一致。
    Two new [1-(phenyl-sulfon-yl)-1H-indol-2-yl]methanamine derivatives, namely, N-(3-meth-oxy-phen-yl)-N-{[1-(phenyl-sulfon-yl)-1H-indol-2-yl]meth-yl}acetamide, C24H22N2O4S, (I), and N-(2,5-di-meth-oxy-phen-yl)-N-{[1-(phenyl-sulfon-yl)-1H-indol-2-yl]meth-yl}benzene-sulfonamide, C29H26N2O6S2, (II), reveal a nearly orthogonal orientation of their indole ring systems and sulfonyl-bound phenyl rings. The sulfonyl moieties adopt the anti-periplanar conformation. For both compounds, the crystal packing is dominated by C-H⋯O bonding [C⋯O = 3.312 (4)-3.788 (8) Å], with the structure of II exhibiting a larger number, but weaker bonds of this type. Slipped π-π inter-actions of anti-parallel indole systems are specific for I, whereas the structure of II delivers two kinds of C-H⋯π inter-actions at both axial sides of the indole moiety. These findings agree with the results of Hirshfeld surface analysis. The primary contributions to the surface areas are associated with the contacts involving H atoms. Although II manifests a larger fraction of the O⋯H/H⋯O contacts (25.8 versus 22.4%), most of them are relatively distal and agree with the corresponding van der Waals separations.
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  • 文章类型: Journal Article
    标题2的晶体结构:2-(烯丙基-硫基)-吡啶与1,2,4,5-四氟-3,6-二-碘-苯之间的1摩尔分子配合物,C6F4I2·2C8H9NS,在100K时已确定在单斜空间群P21/c中。该配合物最值得注意的特征是碘和吡啶环之间的卤素键,具有短的N-I接触[2.8628(12)µ]。Hirshfeld表面分析表明,氢接触占晶体堆积的比例为32.1%。
    The crystal structure of the title 2:1 mol-ecular complex between 2-(allyl-thio)-pyridine and 1,2,4,5-tetra-fluoro-3,6-di-iodo-benzene, C6F4I2·2C8H9NS, at 100 K has been determined in the monoclinic space group P21/c. The most noteworthy characteristic of the complex is the halogen bond between iodine and the pyridine ring with a short N⋯I contact [2.8628 (12) Å]. The Hirshfeld surface analysis shows that the hydrogen⋯hydrogen contacts dominate the crystal packing with a contribution of 32.1%.
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  • 文章类型: Journal Article
    在标题化合物中,C14H14O4,香豆素环系(r.m.s偏差=0.016µ)与五指环之间的二面角为36.26(8)°。观察到分子内C-H-O的短接触为2.40µ。Hirshfeld表面分析表明,分子间的相互作用的46.1%来自H接触,28.6%来自H→O/O→H触点,14.7%来自H→C/C→H。
    In the title compound, C14H14O4, the dihedral angle between the coumarin ring system (r.m.s deviation = 0.016 Å) and the penta-noate ring is 36.26 (8)°. A short intra-molecular C-H⋯O contact of 2.40 Å is observed. Hirshfeld surface analysis reveals that 46.1% of the inter-molecular inter-actions are from H⋯H contacts, 28.6% are from H⋯O/O⋯H contacts and 14.7% are from H⋯C/C⋯H.
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  • 文章类型: Journal Article
    这项研究提出了综合,有机铵盐的表征和Hirshfeld表面分析,C2H7BrN+·Br-。像标题化合物中的小阳离子被认为是混合钙钛矿的有希望的成分,对于光电和光伏应用至关重要。虽然已经探索了将这种有机阳离子掺入各种杂化钙钛矿结构中,其卤化物盐的对应物在很大程度上仍未被研究。获得的结构结果对杂化钙钛矿的合成和相分析具有重要意义。标题化合物以无溶剂形式结晶,呈中心对称单斜空间群P21/c,在其不对称单元中具有一个有机阳离子和一个溴阴离子,铵基和溴取代基之间的扭转角为-64.8(2)°,定位在纱布构造中。晶体堆积主要由Br_H相互作用控制,占整体紧密原子接触的62.6%。
    This study presents the synthesis, characterization and Hirshfeld surface analysis of a small organic ammonium salt, C2H7BrN+·Br-. Small cations like the one in the title compound are considered promising components of hybrid perovskites, crucial for optoelectronic and photovoltaic applications. While the incorporation of this organic cation into various hybrid perovskite structures has been explored, its halide salt counterpart remains largely uninvestigated. The obtained structural results are valuable for the synthesis and phase analysis of hybrid perovskites. The title compound crystallizes in the solvent-free form in the centrosymmetric monoclinic space group P21/c, featuring one organic cation and one bromide anion in its asymmetric unit, with a torsion angle of -64.8 (2)° between the ammonium group and the bromine substituent, positioned in a gauche conformation. The crystal packing is predominantly governed by Br⋯H inter-actions, which constitute 62.6% of the overall close atom contacts.
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