Heterorhabditis

异型横纹炎
  • 文章类型: Journal Article
    尽管在先天免疫的广泛领域取得了令人印象深刻的进步,我们对控制宿主对线虫感染的免疫反应的分子和信号通路的理解仍然不完整.我们最近表明,果蝇果蝇中的转化生长因子-β(TGF-β)信号被线虫感染激活,某些TGF-β超家族成员调节D.melanogaster抗线虫免疫反应。这里,我们研究了昆虫病原线虫感染因子对宿主TGF-β通路调节和免疫功能的影响。我们发现细菌丝氨酸羧肽酶可以激活D.melanogaster成虫的活化素分支和活化素缺乏果蝇的免疫缺陷途径。它影响缺乏激活素信号的苍蝇的血细胞数量和存活率,并导致缺乏激活素的果蝇的肠道脂肪变性增加。因此,对与H.bacteriophora致病因子相互作用的D.melanogaster信号通路和代谢过程的见解将适用于重要农业害虫和病媒的昆虫病原线虫感染。
    Despite impressive advances in the broad field of innate immunity, our understanding of the molecules and signaling pathways that control the host immune response to nematode infection remains incomplete. We have shown recently that Transforming Growth Factor-β (TGF-β) signaling in the fruit fly Drosophila melanogaster is activated by nematode infection and certain TGF-β superfamily members regulate the D. melanogaster anti-nematode immune response. Here, we investigate the effect of an entomopathogenic nematode infection factor on host TGF-β pathway regulation and immune function. We find that Heterorhabditis bacteriophora serine carboxypeptidase activates the Activin branch in D. melanogaster adults and the immune deficiency pathway in Activin-deficient flies, it affects hemocyte numbers and survival in flies deficient for Activin signaling, and causes increased intestinal steatosis in Activin-deficient flies. Thus, insights into the D. melanogaster signaling pathways and metabolic processes interacting with H. bacteriophora pathogenicity factors will be applicable to entomopathogenic nematode infection of important agricultural insect pests and vectors of disease.
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  • 文章类型: Journal Article
    红棕榈象鼻虫(RPW)是对枣树的重大威胁。传统的害虫防治一直是无效的。这项研究旨在评估沙特阿拉伯土著的昆虫病原线虫(EPN)和针对RPW的商业。我们使用了从沙特阿拉伯四个地区收集的33个土壤样本。使用昆虫诱饵方法分离和培养土著EPN,以获得感染性少年。针对RPW的不同阶段进行了致病性生物测定,包括鸡蛋,幼虫,和成年人。使用所有分离物以1×106IJ/mL进行生物测定。蒸馏水用作对照。结果表明,只有9.09%的土壤样品含有阳性的EPN。通过DNA测序分析,阳性样本被鉴定为属于HeterorabditisandSteinernemacarpocapsaeEPN种的本地分离株。在致病性测试中,五天后观察到90%的RPW卵死亡率。在RPW幼虫和成虫中也看到了类似的死亡率趋势,所有EPN治疗10天后记录90%死亡率。死亡率随着EPN接种后暴露的持续时间而增加。1×106IJ/mL浓度的EPN有效地杀死了实验室中RPW的各个阶段。需要更多的研究来测试EPNs对RPW的影响。
    The red palm weevil (RPW) is a significant threat to date palms. Conventional pest control has been ineffective. This study aims to evaluate entomopathogenic nematodes (EPNs) indigenous to Saudi Arabia and commercial against RPW. We used 33 soil samples collected from four areas of Saudi Arabia. The indigenous EPNs were isolated and cultured using an insect baiting method to obtain infective juveniles. Pathogenicity bioassays were conducted against different stages of RPW, including eggs, larvae, and adults. The bioassay was performed using all the isolates at 1 × 106 IJ/mL. Distilled water was used as a control. The results revealed that only 9.09% of soil samples contained positive EPNs. Through DNA sequencing analysis, the positive samples were identified as indigenous isolates belonging to Heterorhabditis indica and Steinernema carpocapsae EPN species. In pathogenicity tests, 90% mortality of RPW eggs was observed after five days. Similar mortality trends were seen in RPW larvae and adults, with 90% mortality recorded after ten days for all the EPN treatments. Mortality increased with the duration of post-EPN inoculation exposure. The 1 × 106 IJ/mL concentrations of EPN effectively killed various stages of RPW in the laboratory. More research is needed to test EPNs against RPW in the field.
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  • 文章类型: Journal Article
    斑翼果蝇,果蝇(松村)(双翅目:果蝇科),是一种降低小水果生产力的害虫。昆虫病原线虫(EPN)和化学杀虫剂可以抑制这种害虫,但是两种方法的兼容性需要进一步检查。这项实验室研究评估了SteinernemabrazilenseIBCBn06,S.carpocapsaeIBCBn02,HeterorabditisamazonensisIBCBn24和H.bacteriophoraHB与十种注册管理的化学杀虫剂的相容性。在第一项研究中,大多数推荐剂量的杀虫剂并没有降低巴西链球菌和两种异型横纹肌的生存力(占感染少年(IJ)的百分比)。暴露于多叶草,降低了S.carpocapsae的生存能力,马拉硫磷,阿维菌素,azadirachin,溴氰菊酯,λ-氯氟氰菊酯,马拉硫磷,48小时后和多杀菌素。在传染性生物测定期间,phosmet与所有的EPN兼容,相对于仅使用EPN的对照组,在感染性(p死亡率%)和效率方面造成最小的变化,而高效氯氰菊酯通常最能降低EPNs对D.suzukiip的感染性,在H.bacteriophora中,感染效率降低了53、75、57和13%,H.amazonensis,S、Carpocapsae,和S.巴西,分别。第二项研究比较了两种最兼容的线虫物种和五种杀虫剂在各种组合中引起的p死亡率。单独使用时,两种异型横纹肌都会导致78-79%的死亡率。并与spinetoram结合进行了测试,马拉硫磷,azadirachin,phosmet,或诺瓦龙四分之一的比率。值得注意的是,单独使用时,H.bacteriophora对D.suzukiip造成79%的死亡率,与spinetoram结合时,死亡率为89%,表现出加性效应。当与亚马逊H.amazonensis和H.bacteriophora结合使用时,Novaluron会大大减少后代IJ的数量。218。从EPN杀虫剂处理过的p中出现的任何成年苍蝇的寿命都比未经处理的p短。杂种和相容的化学杀虫剂的联合使用是有希望的,除了诺瓦龙.
    The spotted-wing drosophila, Drosophila suzukii (Matsumura) (Diptera: Drosophilidae), is a pest that reduces the productivity of small fruits. Entomopathogenic nematodes (EPNs) and chemical insecticides can suppress this pest, but the compatibility of the two approaches together requires further examination. This laboratory study evaluated the compatibility of Steinernema brazilense IBCBn 06, S. carpocapsae IBCBn 02, Heterorhabditis amazonensis IBCBn 24, and H. bacteriophora HB with ten chemical insecticides registered for managing D. suzukii pupae. In the first study, most insecticides at the recommended rate did not reduce the viability (% of living infective juveniles (IJs)) of S. braziliense and both Heterorhabditis species. The viability of S. carpocapsae was lowered by exposure to spinetoram, malathion, abamectin, azadirachtin, deltamethrin, lambda-cyhalothrin, malathion, and spinetoram after 48 h. During infectivity bioassays, phosmet was compatible with all the EPNs, causing minimal changes in infectivity (% pupal mortality) and efficiency relative to EPN-only controls, whereas lambda-cyhalothrin generally reduced infectivity of EPNs on D. suzukii pupae the most, with a 53, 75, 57, and 13% reduction in infectivity efficiency among H. bacteriophora, H. amazonensis, S. carpocapsae, and S. brazilense, respectively. The second study compared pupal mortality caused by the two most compatible nematode species and five insecticides in various combinations. Both Heterorhabditis species caused 78-79% mortality among D. suzukii pupae when used alone, and were tested in combination with spinetoram, malathion, azadirachtin, phosmet, or novaluron at a one-quarter rate. Notably, H. bacteriophora caused 79% mortality on D. suzukii pupae when used alone, and 89% mortality when combined with spinetoram, showing an additive effect. Novaluron drastically reduced the number of progeny IJs when combined with H. amazonensis by 270 IJs and H. bacteriophora by 218. Any adult flies that emerged from EPN-insecticide-treated pupae had a shorter lifespan than from untreated pupae. The combined use of Heterorhabditis and compatible chemical insecticides was promising, except for novaluron.
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  • 文章类型: Journal Article
    真菌疾病,如镰刀菌枯萎病(FHB)是重要的生物应激源,对小麦产量和品质产生负面影响。这项研究探讨了昆虫病原线虫(EPN)的细菌共生体产生的代谢物对引起FHB的镰刀菌的抗真菌活性。镰刀菌。为了实现这一点,来自农业研究理事会-小谷物(ARC-SG)EPN集合的9个EPN分离株的共生细菌是从感染EPN后的海绵状夜蛾(鳞翅目:Pyralidae)幼虫的尸体中分离出来的.每种细菌分离物的肉汤培养物(粗)及其上清液(过滤和高压灭菌)用作细菌代谢物处理,以测试其对F.graminearum菌丝体生长和孢子萌发的抑制作用。菌丝生长抑制率在细菌分离株和治疗方法之间有所不同。粗代谢物处理被证明比过滤和高压灭菌的代谢物处理更有效,总体抑制率为75.25%,而23.93%和13.32%,分别。从粗代谢物治疗中,从SteinernemabeitlecemiSGI197中分离的XenorhabduskhoisanaeSGI197细菌具有最高的平均抑制率96.25%,其次是从异型横纹肌杆菌SGI170中分离出的光纹肌SGI170细菌,平均抑制率为95.79%。测试了所有细菌分离株的过滤代谢物处理对镰刀菌孢子萌发的抑制活性。Xenorhandusspp的平均孢子萌发抑制率。细菌分离株高于光纹丝属的细菌分离株(83.91%至96.29%)。(6.05至14.74%)。从这项研究获得的结果表明,EPN共生细菌代谢产物具有作为FHB生物防治剂的潜在用途。虽然对FHB的现场疗效没有研究,菌丝体生长和孢子萌发的显着抑制表明,在开花期施用这些代谢物可能会保护植物免受F.的感染或传播。这些代谢物有可能被用作病虫害综合治理(IPM)的一部分,以抑制/延迟分生孢子萌发,直到小麦幼苗花期(开花期)过去。
    Fungal diseases such as Fusarium head blight (FHB) are significant biotic stressors, negatively affecting wheat production and quality. This study explored the antifungal activity of the metabolites produced by the bacterial symbionts of entomopathogenic nematodes (EPNs) against FHB-causing Fusarium sp. Fusarium graminearum. To achieve this, the symbiotic bacteria of nine EPN isolates from the EPN collection at the Agricultural Research Council-Small Grains (ARC-SG) were isolated from the cadavers of Galleria mellonella (Lepidoptera: Pyralidae) larvae after infection with EPNs. Broth cultures (crude) and their supernatants (filtered and autoclaved) of each bacterial isolate were used as bacterial metabolite treatments to test their inhibitory effect on the mycelial growth and spore germination of F. graminearum. Mycelial growth inhibition rates varied among both bacterial isolates and treatments. Crude metabolite treatments proved to be more effective than filtered and autoclaved metabolite treatments, with an overall inhibition rate of 75.25% compared to 23.93% and 13.32%, respectively. From the crude metabolite treatments, the Xenorhabdus khoisanae SGI 197 bacterial isolate from Steinernema beitlechemi SGI 197 had the highest mean inhibition rate of 96.25%, followed by Photorhabdus luminescens SGI 170 bacteria isolated from Heterorhabditis bacteriophora SGI 170 with a 95.79% mean inhibition rate. The filtered metabolite treatments of all bacterial isolates were tested for their inhibitory activity against Fusarium graminearum spore germination. Mean spore germination inhibition rates from Xenorhabdus spp. bacterial isolates were higher (83.91 to 96.29%) than those from Photorhabdus spp. (6.05 to 14.74%). The results obtained from this study suggest that EPN symbiotic bacterial metabolites have potential use as biological control agents of FHB. Although field efficacy against FHB was not studied, the significant inhibition of mycelial growth and spore germination suggest that the application of these metabolites at the flowering stage may provide protection to plants against infection with or spread of F. graminearum. These metabolites have the potential to be employed as part of integrated pest management (IPM) to inhibit/delay conidia germination until the anthesis (flowering stage) of wheat seedlings has passed.
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  • 文章类型: Journal Article
    昆虫病原线虫(EPN)是借助共生细菌寄生昆虫的round虫。这些线虫已被用作模式生物和害虫的生物防治。EPN的专门第三阶段,被称为感染性少年(IJ)必须觅食才能找到宿主(巡航,埋伏,和中间),策略因物种而异。一些IJ比其他人移动更多的寻找主机,尽管捕食和干燥的风险增加。这暗示了潜在的潜在好处(例如,入侵增加)对于移动更多的EPN。我们评估了与保持在其起点或附近的线虫相比,沿着土壤柱向下移动的EPN是否也表现出更高的入侵水平。我们发现,游轮和中间物种的移动者:Steinernemariobrave,细菌异型横纹炎,和H.indica的入侵率高于不动的同行。S、Carpocapsae,埋伏者,移动的EPN与未移动的EPN之间没有表现出入侵差异。对于我们测试的三艘巡洋舰/中间EPN,我们的结果支持我们的假设,即倾向于移动更多的EPN享有相关的益处,例如增加的入侵潜力.需要进一步的研究来探索可能与运动相互作用的其他参数。这项研究的结果可以潜在地用于开发移动和侵入更多的EPN菌株,因此可能是更有效的生物防治剂。
    Entomopathogenic nematodes (EPNs) are roundworms that parasitize insects with the aid of symbiotic bacteria. These nematodes have been used both as model organisms and for biological control of pests. The specialized third stage of an EPN, known as an infective juvenile (IJ) must forage to find a host with strategies varying from species to species (cruising, ambushing, and intermediate). Some IJs move more than others to find a host, despite an increased risk of predation and desiccation. This hints at potential underlying benefits (e.g., increased invasion) for EPNs that move more. We assessed whether EPNs that moved farther down a soil column also exhibit higher levels of invasion when compared to nematodes that remained at or near their point of origin. We found that movers in the cruisier and intermediate species: Steinernema riobrave, Heterorhabditis bacteriophora, and H. indica had higher invasion rates compared to their counterparts that did not move. S. carpocapsae, an ambusher, did not exhibit invasion differences between EPNs that moved versus those that did not. For the three cruiser/intermediate EPNs we tested, our results support our hypothesis that EPNs that tend to move more enjoy related benefits such as increased invasion potential. Further studies are required to explore other parameters that may interact with movement. The results of this study can potentially be used to develop EPN strains that move more and invade more, and thus can potentially be more effective biological control agents.
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  • 文章类型: Journal Article
    在叙利亚沿海地区,昆虫病原线虫(EPN)的发生和分布仍然相对未知。为了解决我们知识的差距,对这些生态系统进行广泛的调查至关重要。这项研究旨在从沿海地区的不同生态系统中分离和识别EPN。根据生境分析了EPNs在栽培和自然环境中的分布,高度,和采样季节因素。在2017年至2020年之间,从821个土壤样本中的27个(3.28%)中回收了EPN,并从375个采样点中的24个(6.4%)中收集了EPN。基于形态学,形态计量学,和分子(ITS)特性,确定了四个EPN物种:印度杂种(51.85%),代表其在沿海地区发生的第一份报告,H.细菌(33.33%),H.巴基斯坦(7.4%),这也是叙利亚首次报道,和Steinernema仿射(7.4%)。在每种类型的生境中,EPN的丰度和恢复频率存在统计学差异。此外,海拔高度和采样季节恢复频率存在统计学差异。协同惯性分析揭示了植被生境中EPNs的分布和发生之间的相关性,高度,和采样季节,以及一些土壤特性。H.indica和H.baciophora与柑橘园有关,低空范围,中等有机质,酸性土壤更具体地说,H.indea分离株与橄榄园相关,菜地,秋天的季节,和粘土,sandy,和沙质壤土。同时,H.细菌分离株与烟草田相关,草原,碱性pH,春天的季节,粉质壤土,和粘土壤土。H.巴基斯坦与梨园有联系,葡萄园,中等pH值,和低有机物质。S、仿射发生在核桃果园,粉土,海拔较高,和冬季。三种天然EPN分离株的毒力水平(S.仿射,H.indea和H.bacteriophora)针对三龄和四龄幼虫(地雷外和内)和T.absoruta的p进行了评估,叙利亚的一种破坏性害虫。所有三个本地EPN物种都表现出感染和杀死昆虫的能力,观察到它们的毒力存在显著差异。这项研究提供了对EPN发生的理解,分布,以及它们在叙利亚可持续虫害控制策略中的应用潜力。
    The occurrence and distribution of entomopathogenic nematodes (EPNs) in the Syrian coast regions remain relatively uncharted. To address this gap in our knowledge, an extensive survey of these ecosystems was essential. This study aims to isolate and identify EPNs from diverse ecosystems within the coastal regions. The distribution of EPNs in cultivated and natural environments was analyzed according to habitat, altitude, and sampling season factors. Between 2017 and 2020, EPNs were recovered from 27 out of 821 soil samples (3.28%) and collected from 24 out of 375 sampling sites (6.4%). Based on morphological, morphometric, and molecular (ITS) characteristics, four EPN species were identified: Heterorhabditis indica (51.85%), representing the first report of its occurrence in the coastal regions, H. bacteriophora (33.33%), H. pakistanense (7.4%), which is also reported for the first time in Syria, and Steinernema affine (7.4%). There were statistical differences in the abundance and recovery frequency of EPNs in each type of habitat. Additionally, there were statistical differences in the altitude and sampling season recovery frequency. Co-inertia analysis revealed correlation between the distribution and occurrence of EPNs in vegetation habitats, altitude, and sampling seasons, as well as some soil characteristics. H. indica and H. bacteriophora were associated with citrus orchards, low-altitude ranges, moderate organic matter, and acidic soil. More specifically, H. indica isolates were correlated with olive orchards, vegetable fields, autumn season, and clay, sandy, and sandy loam soils. Meanwhile, H. bacteriophora isolates were correlated with tobacco fields, grasslands, alkaline pH, spring season, silty loam, and clay loam soils. H. pakistanense was linked to pear orchards, vineyards, moderate pH, and low organic matter. S. affine occurred in walnut orchards, silty soil, higher altitudes, and winter season. The virulence levels of three native EPN isolates (S. affine, H. indica and H. bacteriophora) were evaluated against 3rd and 4th instar larvae (outside and inside mines) and pupae of T. absoluta, a destructive pest in Syria. All three native EPN species exhibited ability to infect and kill the insect, with observed significant differences in their virulence. This study provides an understanding of EPN occurrence, distribution, and their potential for application in sustainable pest control strategies in Syria.
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  • 文章类型: Journal Article
    近年来在探索免疫代谢方面取得了重大进展,一个整合了维持组织和机体稳态所必需的两个过程的领域,免疫力和新陈代谢。线虫寄生虫杂种gerrardi,它的共生细菌不对称光带,果蝇果蝇构成了一个独特的系统,可以研究宿主对线虫-细菌复合物的免疫代谢反应的分子基础。在这项研究中,我们探索了两个主要的免疫信号通路的贡献,Toll和Imd,黑腹D.melanogaster幼虫在感染H.gerrardi线虫期间的糖代谢。我们用H.gerrardi线虫感染了Toll或Imd信号功能丧失突变幼虫,并评估了幼虫的生存能力,喂食率,和糖代谢。我们发现,当对H.gerrardi感染作出反应时,任何突变幼虫的存活能力或糖代谢产物水平都没有显着差异。然而,我们发现,在感染的早期阶段,Imd突变幼虫的摄食率高于对照。此外,随着感染的进行,相对于对照幼虫,Imd突变体的摄食率较低。我们进一步表明,与感染早期对照相比,Imd突变体中Dilp2和Dilp3基因表达增加,但它们的表达水平在以后降低。这些发现表明,Imd信号传导活性调节感染了H.gerrardi的黑腹D.幼虫的摄食率以及Dilp2和Dilp3的表达。这项研究的结果有助于我们了解寄生线虫引起的传染病中宿主先天免疫与糖代谢之间的联系。
    Significant progress has been made in recent years on exploring immunometabolism, a field that integrates two processes essential for maintaining tissue and organismal homeostasis, immunity and metabolism. The nematode parasite Heterorhabditis gerrardi, its mutualistic bacteria Photorhabdus asymbiotica, and the fruit fly Drosophila melanogaster constitute a unique system to investigate the molecular basis of host immunometabolic response to nematode-bacterial complexes. In this study, we explored the contribution of the two major immune signaling pathways, Toll and Imd, to sugar metabolism in D. melanogaster larvae during infection with H. gerrardi nematodes. We infected Toll or Imd signaling loss-of-function mutant larvae with H. gerrardi nematodes and assessed larval survival ability, feeding rate, and sugar metabolism. We found no significant differences in the survival ability or levels of sugar metabolites in any of the mutant larvae when responding to H. gerrardi infection. However, we found that the Imd mutant larvae have higher feeding rate than controls during the early stages of infection. In addition, feeding rates are lower in Imd mutants relative to the control larvae as the infection progresses. We further showed that Dilp2 and Dilp3 gene expression increases in Imd mutants compared to controls early in the infection, but their expression levels decrease at later times. These findings indicate that Imd signaling activity regulates the feeding rate and Dilp2 and Dilp3 expression in D. melanogaster larvae infected with H. gerrardi. Results from this study facilitate our understanding of the link between host innate immunity and sugar metabolism in the context of infectious diseases caused by parasitic nematodes.
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  • 文章类型: Journal Article
    Steinernema和异型横纹肌炎属的昆虫病原线虫(EPN)被认为是几种昆虫的有效生物防治剂。在这项研究中,我们从泰国北部农业区的土壤样本中分离并鉴定了EPN,并评估了其控制三种蚊媒幼虫的功效,埃及伊蚊,Ae.白纹伊蚊和库蚊。在1,000个土壤样本中,共有51个为EPN阳性(患病率为5.1%),通过对37个Steinernema分离株(3.7%)和14个异型横纹肌炎分离株(1.4%)的rDNA和ITS进行测序鉴定。对于生物测定,蚊子的幼虫暴露于Steinernemasurkhetense(eALN6.3_TH),Steinernemalamjungense(eALN11.5_TH),紫斑异位炎(eACM14.2_TH)和紫斑异位炎(eALN18.2_TH)。异型横纹肌对Ae的疗效最高。埃及伊蚊和CX。Quinquefasciatus.暴露后96小时,死亡率分别为60.0%和91.7%,分别。在死蚊子幼虫中观察到EPN,主要出现在胸部,其次是头部和腹部。一些EPN死于黑色素化,有些能够在蚊子幼虫的空腔中存活。我们的结果表明,泰国农业地区的EPN患病率较低。此外,H.Bacteriophora可以被认为是管理和控制这些媒介蚊子的替代生物控制剂。
    Entomopathogenic nematodes (EPNs) of the genera Steinernema and Heterorhabditis have been considered to be effective biological control agents for several insects. In this study, we isolated and identified EPNs from soil samples in agricultural areas of northern Thailand and evaluated their efficacy for controlling larvae of three mosquito vector species, Aedes aegypti, Ae. albopictus and Culex quinquefasciatus. A total of 51 of 1,000 soil samples were positive (5.1% prevalence) for EPNs, which were identified through sequencing of the rDNA and ITS to 37 Steinernema isolates (3.7%) and 14 Heterorhabditis isolates (1.4%). For the bioassay, the larvae of mosquitoes were exposed to Steinernema surkhetense (eALN6.3_TH), Steinernema lamjungense (eALN11.5_TH), Heterorhabditis indica (eACM14.2_TH) and Heterorhabditis bacteriophora (eALN18.2_TH). Heterorhabditis bacteriophora showed the highest efficacy against Ae. aegypti and Cx. quinquefasciatus. At 96 h after exposure, the mortality rates were 60.0 and 91.7%, respectively. The EPNs were observed in the dead mosquito larvae, which were mostly found in the thorax followed by the head and abdomen. Some EPNs were dead with melanization, and some were able to survive in the cavity of mosquito larvae. Our results show the low prevalence of EPN in agricultural areas of Thailand. Moreover, H. bacteriophora may be considered an alternative biocontrol agent for managing and controlling these vector mosquitoes.
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  • 文章类型: Journal Article
    背景:线虫是一种主要的土壤生物。异型横纹肌线虫是昆虫病原线虫,与光纹肌细菌紧密共生。异型横纹肌-光纹肌对为研究动物-微生物共生提供了一个强大且遗传上易于处理的模型。在异型横纹肌炎中可能产生不含共生体细菌(无菌)的阶段。这里,我们比较了共生早期-成虫阶段的异型横纹肌线虫和轴性早期-成虫线虫的转录组,以确定与光纹肌细菌共生的线虫基因和途径.
    结果:通过使用所有读段为H.bacteriophora创建95.7Mb的从头参考转录组组装。该组件包含46,599个转录物,N50值为2,681bp,平均转录物长度为2,054bp。通过将来自共生和无菌线虫的读段映射到参考装配体来鉴定差异表达的转录本。与轴系线虫相比,在共生线虫中总共鉴定出754种差异表达的转录本。在差异表达的转录物中,核糖体途径被认为是受影响最大的。此外,12,151个转录本是共生线虫特有的。胞吞作用,cAMP信号和粘着斑是共生线虫中的三大富集途径,虽然大量转录本编码针对细菌的各种反应,如细菌识别,规范的免疫信号通路,和抗菌效应物也可以被识别。
    结论:共生异型横纹肌线虫通过表达参与多层免疫反应的各种转录本对共生细菌的存在做出反应,这些转录本可能代表非系统性和进化的局部反应,以将共生细菌维持在非威胁水平。经过鉴定的转录本的进一步功能验证,我们的研究结果表明,异型横纹肌线虫免疫系统在维持光纹肌细菌共生中起着至关重要的作用。
    BACKGROUND: Nematodes are a major group of soil inhabiting organisms. Heterorhabditis nematodes are insect-pathogenic nematodes and live in a close symbiotic association with Photorhabdus bacteria. Heterorhabditis-Photorhabdus pair offers a powerful and genetically tractable model to study animal-microbe symbiosis. It is possible to generate symbiont bacteria free (axenic) stages in Heterorhabditis. Here, we compared the transcriptome of symbiotic early-adult stage Heterorhabditis nematodes with axenic early-adult nematodes to determine the nematode genes and pathways involved in symbiosis with Photorhabdus bacteria.
    RESULTS: A de-novo reference transcriptome assembly of 95.7 Mb was created for H. bacteriophora by using all the reads. The assembly contained 46,599 transcripts with N50 value of 2,681 bp and the average transcript length was 2,054 bp. The differentially expressed transcripts were identified by mapping reads from symbiotic and axenic nematodes to the reference assembly. A total of 754 differentially expressed transcripts were identified in symbiotic nematodes as compared to the axenic nematodes. The ribosomal pathway was identified as the most affected among the differentially expressed transcripts. Additionally, 12,151 transcripts were unique to symbiotic nematodes. Endocytosis, cAMP signalling and focal adhesion were the top three enriched pathways in symbiotic nematodes, while a large number of transcripts coding for various responses against bacteria, such as bacterial recognition, canonical immune signalling pathways, and antimicrobial effectors could also be identified.
    CONCLUSIONS: The symbiotic Heterorhabditis nematodes respond to the presence of symbiotic bacteria by expressing various transcripts involved in a multi-layered immune response which might represent non-systemic and evolved localized responses to maintain mutualistic bacteria at non-threatening levels. Subject to further functional validation of the identified transcripts, our findings suggest that Heterorhabditis nematode immune system plays a critical role in maintenance of symbiosis with Photorhabdus bacteria.
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  • 文章类型: Journal Article
    一个运动,革兰氏阴性,非孢子形成和杆状共生细菌,菌株UCH-936T,是从杂种线虫中分离出来的。生化结果,生理,分子和基因组分析表明,它代表了一个新物种,我们建议将其命名为阿塔马普斯。11月。数字DNA-DNA杂交表明,菌株UCH-936T与光致克列氏DSM23513T的亲缘关系更密切,但只有50.5%的相似性,低于划定细菌物种边界的70%的临界值。使用全基因组序列的系统发育重建表明,菌株UCH-936T形成了一个独特的进化枝,再次表明了它新颖而独特的分类学地位。同样,比较基因组分析表明,毒力因子鞭毛相关基因fleR,IV型菌毛相关基因pilL和弧菌素相关基因vibE存在于菌株UCH-936T的基因组中,但在其近亲的基因组中不存在。生物化学和生理学,UCH-936T也不同于所有密切相关的光纹针种类。因此,凹凸棒石。11月。建议使用UCH-936T型菌株作为新物种(CCCT21.06T=CCM9188T=CCOS1991T)。
    One motile, Gram-negative, non-spore-forming and rod-shaped symbiotic bacterium, strain UCH-936T, was isolated from Heterorhabditis atacamensis nematodes. Results of biochemical, physiological, molecular and genomic analyses suggest that it represents a new species, which we propose to name Photorhabdus antumapuensis sp. nov. Digital DNA-DNA hybridization shows that strain UCH-936T is more closely related to Photorhabdus kleinii DSM 23513T, but shares solely 50.5 % similarity, which is below the 70% cut-off value that delimits species boundaries in bacteria. Phylogenetic reconstructions using whole-genome sequences show that strain UCH-936T forms a unique clade, suggesting its novel and distinct taxonomic status again. Similarly, comparative genomic analyses shows that the virulence factor flagella-related gene fleR, the type IV pili-related gene pilL and the vibriobactin-related gene vibE are present in the genome of strain UCH-936T but absent in the genomes of its closest relatives. Biochemically and physiologically, UCH-936T differs also from all closely related Photorhabdus species. Therefore, Photorhabdus antumapuensis sp. nov. is proposed as a new species with the type strain UCH-936T (CCCT 21.06T=CCM 9188T=CCOS 1991T).
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