Harmonisation

协调
  • 文章类型: Journal Article
    在Isfjorden的地表水中研究了微塑料污染,斯瓦尔巴群岛于2021年7月举行,作为国际区域协调行动的一部分。在Isfjorden的几个分支中,每个研究地点一式三份地对表面微塑料(0.5-5毫米)进行采样,覆盖人口稠密和无人居住的峡湾。在单个峡湾内观察到微塑料丰度的高空间变异性(0-32,700个项目/km2),这是由于通过表面水流的相互作用形成的流体动力学模式所致。淡水径流,和风况。最大微塑料丰度与距局部来源的距离无关,而是由局部小规模流体动力学定义。提出了正确评估河口环境中表面微塑料浓度的未来建议。
    Microplastic pollution was studied in surface waters of Isfjorden, Svalbard in July 2021 as a part of an international regional harmonisation exercise. Surface microplastics (0.5-5 mm) were sampled with a neuston net in triplicate per study site in several branches of Isfjorden, covering populated and unpopulated fjords. High spatial variability of microplastic abundance (0-32,700 items/km2) was observed within a single fjord resulting from the hydrodynamic pattern formed through the interaction of surface currents, freshwater runoff, and wind conditions. Maximum microplastic abundance was not correlated with the distance from the local source and was instead defined by local small-scale hydrodynamics. Future recommendations for correct assessment of surface microplastics concentration in estuarine environments are presented.
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  • 文章类型: Journal Article
    背景:汇集来自不同来源的数据将通过提供更大的样本量并允许交叉研究比较来促进心理健康研究;但是,研究中变量测量方式的异质性对这一过程提出了挑战。
    方法:这项研究探索了使用自然语言处理(NLP)通过根据语义内容匹配单个问题来协调不同心理健康问卷的潜力。使用句子-BERT模型,我们计算了5份问卷中741对问题的语义相似度(余弦指数)。利用英国代表性成年人样本的数据(N=2058),我们计算了同一对物品的Spearman等级相关性,然后估计余弦值与Spearman系数之间的相关性。我们还使用网络分析来探索模型在数据和元数据中发现结构的能力。
    结果:我们发现两个指数之间存在中等程度的总体相关性(r=.48,p<.001)。在保留样本中,余弦分数预测了真实世界的相关性,误差程度较小(MAE=0.05,MedAE=0.04,RMSE=0.064),表明NLP在识别跨研究数据汇集的相似项目方面具有实用性.我们的NLP模型可以检测数据中更复杂的模式,然而,它需要手动规则来决定哪些边包括在网络中。
    结论:这项研究表明,可以从其元数据中量化问卷项目对之间的语义相似性,这些相似性指数与参与者如何回答相同的两个项目相关。这凸显了NLP促进心理健康研究中跨研究数据汇集的潜力。然而,研究人员被告诫要验证匹配项目的心理测量等效性。
    BACKGROUND: Pooling data from different sources will advance mental health research by providing larger sample sizes and allowing cross-study comparisons; however, the heterogeneity in how variables are measured across studies poses a challenge to this process.
    METHODS: This study explored the potential of using natural language processing (NLP) to harmonise different mental health questionnaires by matching individual questions based on their semantic content. Using the Sentence-BERT model, we calculated the semantic similarity (cosine index) between 741 pairs of questions from five questionnaires. Drawing on data from a representative UK sample of adults (N = 2,058), we calculated a Spearman rank correlation for each of the same pairs of items, and then estimated the correlation between the cosine values and Spearman coefficients. We also used network analysis to explore the model\'s ability to uncover structures within the data and metadata.
    RESULTS: We found a moderate overall correlation (r = .48, p < .001) between the two indices. In a holdout sample, the cosine scores predicted the real-world correlations with a small degree of error (MAE = 0.05, MedAE = 0.04, RMSE = 0.064) suggesting the utility of NLP in identifying similar items for cross-study data pooling. Our NLP model could detect more complex patterns in our data, however it required manual rules to decide which edges to include in the network.
    CONCLUSIONS: This research shows that it is possible to quantify the semantic similarity between pairs of questionnaire items from their meta-data, and these similarity indices correlate with how participants would answer the same two items. This highlights the potential of NLP to facilitate cross-study data pooling in mental health research. Nevertheless, researchers are cautioned to verify the psychometric equivalence of matched items.
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  • 文章类型: Journal Article
    实验室生物标志物的协调对于确保跨不同临床环境的一致和可靠的诊断结果至关重要。本系统评价检查了C反应蛋白(CRP)和脑钠肽的N末端激素原(NT-proBNP)测量的协调,两者共同用于心血管疾病的诊断和管理。为了确定相关研究,我们使用特定的医学主题标题和关键字(如C-反应蛋白)搜索PubMed电子数据库,CRP,高敏C反应蛋白(hs-CRP),N末端B型利钠肽原,和NT-proBNP,专注于2021年6月1日至9月26日的出版物。该查询过滤了研究,仅包括涉及人类受试者的英语研究。从我们的搜索,97篇文章符合纳入标准,纳入进行深入分析。尽管它们广泛使用,由于缺乏标准化的预分析,CRP和NT-proBNP的测量仍然存在显著的变异性,分析,和分析后实践。这篇综述强调了这种变异性对临床决策和患者预后的影响,并强调需要国际标准和指南来实现更好的协调。我们的发现提倡建立通用协议,以增强这些生物标志物测量在不同临床环境中的可靠性。确保改善医疗保健服务。
    The harmonization of laboratory biomarkers is pivotal in ensuring consistent and reliable diagnostic outcomes across different clinical settings. This systematic review examines the harmonization of C-Reactive Protein (CRP) and N-Terminal Prohormone of Brain Natriuretic Peptide (NT-proBNP) measurements, both of which are jointly utilized in the diagnosis and management of cardiovascular diseases. To identify relevant studies, we searched the PubMed electronic database using specific medical subject headings and keywords such as C-Reactive Protein, CRP, high sensitivity C-Reactive Protein (hs-CRP), N-terminal pro B-type natriuretic peptide, and NT-proBNP, focusing on publications from June 1 to September 26, 2021. The query filtered studies to include only those in English involving human subjects. From our search, 97 articles met the inclusion criteria and were included for in-depth analysis. Despite their widespread use, significant variability remains in the measurements of CRP and NT-proBNP due to a lack of standardized pre-analytical, analytical, and post-analytical practices. This review highlights the consequences of this variability on clinical decision-making and patient outcomes and emphasizes the need for international standards and guidelines to achieve better harmonization. Our findings advocate for the establishment of universal protocols to enhance the reliability of these biomarker measurements across different clinical environments, ensuring improved healthcare delivery.
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  • 文章类型: Journal Article
    重组抗体(Ab)是用于治疗多种肿瘤恶性肿瘤的完整形式。自从美国食品和药物管理局(FDA)批准利妥昔单抗作为第一个用于癌症治疗的单克隆抗体(mAb)以来,几种基于单克隆抗体和抗体(Ab)的疗法已被批准用于治疗实体瘤恶性肿瘤和其他癌症。这些Abs通过阻断致癌途径或血管生成发挥功能,调节免疫反应,或通过递送共轭药物。在可以从治疗中受益的癌症患者中使用基于Ab的治疗,然而,仍然受到相关毒性谱的限制,这些毒性谱可能源于与靶标结合相关的生物学特征和过程,以及治疗性Ab的生化和/或生物物理特征。与基于Ab的治疗相关的显著免疫相关不良事件(irAE)是细胞因子释放综合征(CRS),以发烧为特征,皮疹,甚至标记,危及生命的低血压,和急性炎症,继发于全身不受控制的一系列促炎细胞因子的增加。这里,我们审查与特定类别的批准相关的IRAE,基于Ab的新型癌症免疫治疗剂,即免疫检查点(IC)靶向抗体,双特异性抗体(BsAb)和Ab-药物缀合物(ADC),强调协调在临床前试验开发中的重要性,用于基于Ab的生物治疗药物的安全性评估,作为支持和完善临床翻译的方法。
    Recombinant antibodies (Abs) are an integral modality for the treatment of multiple tumour malignancies. Since the Food and Drug Administration (FDA) approval of rituximab as the first monoclonal antibody (mAb) for cancer treatment, several mAbs and antibody (Ab)-based therapies have been approved for the treatment of solid tumour malignancies and other cancers. These Abs function by either blocking oncogenic pathways or angiogenesis, modulating immune response, or by delivering a conjugated drug. The use of Ab-based therapy in cancer patients who could benefit from the treatment, however, is still limited by associated toxicity profiles which may stem from biological features and processes related to target binding, alongside biochemical and/or biophysical characteristics of the therapeutic Ab. A significant immune-related adverse event (irAE) associated with Ab-based therapies is cytokine release syndrome (CRS), characterized by the development of fever, rash and even marked, life-threatening hypotension, and acute inflammation with secondary to systemic uncontrolled increase in a range of pro-inflammatory cytokines. Here, we review irAEs associated with specific classes of approved, Ab-based novel cancer immunotherapeutics, namely immune checkpoint (IC)-targeting Abs, bispecific Abs (BsAbs) and Ab-drug-conjugates (ADCs), highlighting the significance of harmonization in preclinical assay development for safety assessment of Ab-based biotherapeutics as an approach to support and refine clinical translation.
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  • 文章类型: Journal Article
    为活性药物成分(API)设置了允许的每日暴露限值(PDE),以控制在共享设施中制造药品时的交叉污染。由于缺乏药品的官方PDE清单,PDE必须由每个公司单独设置。尽管存在设置PDE的一般规则和准则,PDE设置中的公司间变化会发生,并且在一定范围内被认为是可以接受的。为了评估不同制药公司之间PDE方法的稳健性,五种上市原料药的PDE设置数据(氨氯地平,氢氯噻嗪,二甲双胍,吗啡,和奥美拉唑)进行收集和比较。研究结果表明,对于所有化合物,PDE值之间的可变性在可接受的范围内(低于10倍),由于不同的偏离点(POD)和调整因子(AF),吗啡的差异最大。确定和进一步讨论的PDE变异性的因素是:(1)数据的可用性,(2)POD的选择,(3)AF的分配,(4)路线到路线外推,(5)专家判断和公司政策的差异。我们得出的结论是,所研究的PDE方法和计算是可靠的,并且在科学上是可以辩护的。此外,我们提供进一步的建议,以协调整个制药行业的PDE计算方法。
    Permitted Daily Exposure Limits (PDEs) are set for Active Pharmaceutical Ingredients (APIs) to control cross-contamination when manufacturing medicinal products in shared facilities. With the lack of official PDE lists for pharmaceuticals, PDEs have to be set by each company separately. Although general rules and guidelines for the setting of PDEs exist, inter-company variations in the setting of PDEs occur and are considered acceptable within a certain range. To evaluate the robustness of the PDE approach between different pharmaceutical companies, data on PDE setting of five marketed APIs (amlodipine, hydrochlorothiazide, metformin, morphine, and omeprazole) were collected and compared. Findings show that the variability between PDE values is within acceptable ranges (below 10-fold) for all compounds, with the highest difference for morphine due to different Point of Departures (PODs) and Adjustment Factors (AFs). Factors of PDE variability identified and further discussed are: (1) availability of data, (2) selection of POD, (3) assignment of AFs, (4) route-to-route extrapolation, and (5) expert judgement and differences in company policies. We conclude that the investigated PDE methods and calculations are robust and scientifically defensible. Additionally, we provide further recommendations to harmonize PDE calculation approaches across the pharmaceutical industry.
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  • 文章类型: Journal Article
    分析食品的维生素含量,以支持对合规性的验证或生成食品成分数据。许多用于分析食品中维生素的国际参考方法起源于1990年代。营养科学和分析技术的进步以及法律法规的不断发展,需要新的或补充的监管标准。我们评估了这些领域的最新发展,并得出结论,大多数当前的国际参考方法不再适合准确确定食品和食品补充剂中的维生素含量。我们已提出建议,以考虑新的和/或更新的参考方法和监管标准来分析维生素A,D,E,K,食物和食品补充剂中的B1,B2,B3,B5,B6,B7,B9,B12,C和类胡萝卜素。这一领域的营养素可能会受益于全球统一的定义,这些定义规定了要包括或排除哪些化合物进行分析。和适用的生物活性因子。
    Foods are analysed for their vitamin content to support the verification of regulatory compliance or to generate food composition data. Many international reference methods for the analysis of vitamins in foods originate from the 1990s. Advances in nutrition science and analytical technology and the continuing evolution of statutory regulations necessitate the need of new or supplementary regulatory standards. We have evaluated recent developments in these areas and conclude that most current international reference methods are no longer fit-for-purpose to accurately determine vitamin content in foods and food supplements. We have made recommendations to consider new and/or updated reference methods and regulatory standards for the analysis of vitamins A, D, E, K, B1, B2, B3, B5, B6, B7, B9, B12, C and carotenoids in foods and food supplements. This area of nutrients may benefit from globally harmonised definitions specifying what compounds to include or exclude for analysis, and applicable bioactivity factors.
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  • 文章类型: Journal Article
    电子医疗记录(EHR)是健康研究的重要资源,可用于改善慢性呼吸系统疾病患者的预后。然而,在分析这些数据集时需要一致的方法来进行连贯的消息传递,在进行不同人群的比较研究时。
    我们开发了一种协调的策展方法,以产生可比较的哮喘患者队列,慢性阻塞性肺疾病(COPD)和间质性肺病(ILD)使用来自临床实践研究数据链(CPRD;英格兰)的数据集,通过在数据集之间一致定义通常得出的变量,确保匿名信息链接(SAIL;对于威尔士)和DataLoch(对于苏格兰)。通过并行研究用于CPRD的策展方法,SAIL和DataLoch治疗哮喘,COPD和ILD,我们能够突出数据库之间编码和记录的关键差异,并确定解决方案,以实现有效的比较。
    已提供代码列表和生成的元数据,以帮助重新创建哮喘,CPRD中的COPD和ILD队列,不同时间段的SAIL和DataLoch,并为其他EHR数据库中的呼吸数据集的管理提供起点,加快进一步的可比呼吸研究。
    UNASSIGNED: Electronic healthcare records (EHRs) are an important resource for health research that can be used to improve patient outcomes in chronic respiratory diseases. However, consistent approaches in the analysis of these datasets are needed for coherent messaging, and when undertaking comparative studies across different populations.
    UNASSIGNED: We developed a harmonised curation approach to generate comparable patient cohorts for asthma, chronic obstructive pulmonary disease (COPD) and interstitial lung disease (ILD) using datasets from within Clinical Practice Research Datalink (CPRD; for England), Secure Anonymised Information Linkage (SAIL; for Wales) and DataLoch (for Scotland) by defining commonly derived variables consistently between the datasets. By working in parallel on the curation methodology used for CPRD, SAIL and DataLoch for asthma, COPD and ILD, we were able to highlight key differences in coding and recording between the databases and identify solutions to enable valid comparisons.
    UNASSIGNED: Codelists and metadata generated have been made available to help re-create the asthma, COPD and ILD cohorts in CPRD, SAIL and DataLoch for different time periods, and provide a starting point for the curation of respiratory datasets in other EHR databases, expediting further comparable respiratory research.
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  • 文章类型: Journal Article
    背景:有人提出,精神分裂症涉及脑功能区域之间的连接障碍以及白质结构紊乱。因此,弥散张量成像(DTI)已广泛应用于精神分裂症的研究。然而,以前的大多数研究都使用基于感兴趣区域(ROI)的方法。我们,因此,在这项研究中进行了概率纤维束成像方法,以揭示精神分裂症大脑中白质束的改变。
    方法:共四个不同的数据集,包括189名精神分裂症患者和213名健康对照。我们通过dMRI协调对原始扩散MRI数据进行了回顾性协调,并使用FMRIB软件库(FSL)进行了概率示踪成像。然后在患者和对照组之间比较不同ROI之间的连通性。此外,我们评估了精神分裂症患者的连接概率与症状和认知指标之间的关系.
    结果:在应用Bonferroni校正进行多重比较后,11个不同的领域在精神分裂症患者和健康对照组之间显示出显着差异。这些束中的许多与基底神经节或皮质纹状体结构有关,这与目前强调纹状体功能障碍的文献一致。此外,我们发现这些片段表现出统计学上显著的关系,与语言相关的认知测量很少,执行功能,或处理速度。
    结论:我们使用大型,扩散磁共振成像数据的统一数据集,这增强了我们研究的统计能力。重要的是要注意,本研究中确定的大多数区域,特别是call骨和皮质纹状体流线,在目前的文献中,以前曾与精神分裂症有牵连。可以推荐使用专门针对这些大脑区域的协调数据进行进一步研究。
    BACKGROUND: It has been suggested that schizophrenia involves dysconnectivity between functional brain regions and also the white matter structural disorganisation. Thus, diffusion tensor imaging (DTI) has widely been used for studying schizophrenia. However, most previous studies have used the region of interest (ROI) based approach. We, therefore, performed the probabilistic tractography method in this study to reveal the alterations of white matter tracts in the schizophrenia brain.
    METHODS: A total of four different datasets consisted of 189 patients with schizophrenia and 213 healthy controls were investigated. We performed retrospective harmonisation of raw diffusion MRI data by dMRIharmonisation and used the FMRIB Software Library (FSL) for probabilistic tractography. The connectivities between different ROIs were then compared between patients and controls. Furthermore, we evaluated the relationship between the connection probabilities and the symptoms and cognitive measures in patients with schizophrenia.
    RESULTS: After applying Bonferroni correction for multiple comparisons, 11 different tracts showed significant differences between patients with schizophrenia and healthy controls. Many of these tracts were associated with the basal ganglia or cortico-striatal structures, which aligns with the current literature highlighting striatal dysfunction. Moreover, we found that these tracts demonstrated statistically significant relationships with few cognitive measures related to language, executive function, or processing speed.
    CONCLUSIONS: We performed probabilistic tractography using a large, harmonised dataset of diffusion MRI data, which enhanced the statistical power of our study. It is important to note that most of the tracts identified in this study, particularly callosal and cortico-striatal streamlines, have been previously implicated in schizophrenia within the current literature. Further research with harmonised data focusing specifically on these brain regions could be recommended.
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  • 文章类型: Journal Article
    促甲状腺激素(TSH)是甲状腺疾病诊断和治疗的重要临床指标。TSH测量以毫国际单位/升(mIU/L)为单位报告,可追溯到世界卫生组织(WHO)参考材料。有各种各样的商业免疫测定TSH测量可用,由于世卫组织参考材料与患者样本缺乏可交换性,历史上一直不协调。这导致了基于血清的TSH参考小组的最新发展,可追溯到世卫组织参考材料,可通过国际临床化学和实验室医学联合会(IFCC)获得,旨在统一TSH免疫测定。本报告描述了TSH参考系统的最新发展,包括建立第四个世界卫生组织TSH国际标准,并旨在阐明现有参考资料与其预期用途之间的关系。第四个世卫组织是广泛可用的,并定义了TSH活动的单位,因此,它的持续存在至关重要,然而,在许多TSH免疫测定中,它仍然显示缺乏与患者的可交换性.这使得C-STFTTSH面板,尽管数量有限,确保更好的TSH测定协调的关键资源。
    Thyroid-stimulating hormone (TSH) is an important clinical marker in the diagnosis and management of thyroid disease. TSH measurements are reported in milli-International Units per Litre (mIU/L), traceable to a World Health Organisation (WHO) reference material. There is a wide variety of commercial immunoassays for TSH measurements available, which have historically been poorly harmonised due to a lack of commutability of the WHO reference materials with patient samples. This led to the recent development of a serum-based reference panel for TSH, traceable to the WHO reference material, available via the International Federation for Clinical Chemistry and Laboratory Medicine (IFCC), aimed at harmonisation of TSH immunoassays. This report describes recent developments in the TSH reference system, including establishment of the 4th WHO International Standard for TSH, and aims to clarify the relationship between the available reference materials and their intended uses. This 4th WHO IS is widely available and defines the unit of TSH activity, therefore its continued existence is of paramount importance, however it continues to show a lack of commutability with patient in many TSH immunoassays. This makes the C-STFT TSH panel, albeit available in restricted numbers, a critical resource to ensure better TSH assay harmonisation.
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  • 文章类型: Journal Article
    目的:全球饮食数据库(GDD)扩展了其先前的方法,以协调和公开传播来自全球营养调查的个人水平饮食数据。
    方法:横截面数据分析。
    方法:全局。
    方法:一般人群。
    方法:简化初级、制定了全球个人24小时召回和食品记录数据。为了标准化不同的食物描述,使用了FoodEx2,EFSA开发并调整为国际使用的高度详细的食品分类和描述系统。制定了标准化程序,以:确定合格的调查;联系数据所有者;筛选调查以纳入;协调数据结构,变量定义和单位,和食品特征;进行数据检查;并公开传播统一的数据集。GDD与粮农组织和EFSA联手,考虑到全球统一个人水平饮食数据的共同目标。
    结果:在确定的1,500项饮食调查中,600符合资格标准,和156项被优先排序和联系;55项调查被纳入协调范围,最终,52是统一的。纳入的调查主要具有全国代表性(59%);包括高(39%),中上(21%),中下层(27%),和低收入(13%)国家;通常收集多次召回/记录(64%);并在很大程度上记录了两性,所有年龄,农村和城市地区。低收入和中低收入国家与高收入和中高收入国家的调查报告的营养素较少(中位数为17vs.30),很少包括与饮食相关的慢性疾病相关的营养素,如ω-3脂肪酸和钠。
    结论:可以协调不同的24小时召回/记录,以提供高度细粒度的,标准化数据,支持营养规划,研究,和全球能力发展。
    OBJECTIVE: The Global Dietary Database (GDD) expanded its previous methods to harmonise and publicly disseminate individual-level dietary data from nutrition surveys worldwide.
    METHODS: Analysis of cross-sectional data.
    METHODS: Global.
    METHODS: General population.
    METHODS: Comprehensive methods to streamline the harmonisation of primary, individual-level 24-h recall and food record data worldwide were developed. To standardise the varying food descriptions, FoodEx2 was used, a highly detailed food classification and description system developed and adapted for international use by European Food Safety Authority (EFSA). Standardised processes were developed to: identify eligible surveys; contact data owners; screen surveys for inclusion; harmonise data structure, variable definition and unit and food characterisation; perform data checks and publicly disseminate the harmonised datasets. The GDD joined forces with FAO and EFSA, given the shared goal of harmonising individual-level dietary data worldwide.
    RESULTS: Of 1500 dietary surveys identified, 600 met the eligibility criteria, and 156 were prioritised and contacted; fifty-five surveys were included for harmonisation and, ultimately, fifty two were harmonised. The included surveys were primarily nationally representative (59 %); included high- (39 %), upper-middle (21 %), lower-middle (27 %) and low- (13 %) income countries; usually collected multiple recalls/ records (64 %) and largely captured both sexes, all ages and both rural and urban areas. Surveys from low- and lower-middle v. high- and upper-middle income countries reported fewer nutrients (median 17 v. 30) and rarely included nutrients relevant to diet-related chronic diseases, such as n-3 fatty acids and Na.
    CONCLUSIONS: Diverse 24-h recalls/records can be harmonised to provide highly granular, standardised data, supporting nutrition programming, research and capacity development worldwide.
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