HSQC, Heteronuclear single quantum coherence spectroscopy

  • 文章类型: Journal Article
    计算机辅助方法的使用继续推动各种疾病模型加速药物发现,有趣的是,允许特异性抑制致病靶标。氯化物细胞内通道蛋白4(CLIC4)是一类与肿瘤和血管生物学密切相关的新型细胞内离子通道。它调节细胞增殖,细胞凋亡和血管生成;并参与多种病理信号通路。然而,缺乏特异性抑制剂阻碍了其向转化研究的发展。这里,我们整合了结构生物信息学和实验研究方法,以发现和验证CLIC4的小分子抑制剂.通过高性能计算驱动的盲对接方法,从1615个食品和药物管理局(FDA)批准的药物库中鉴定出高亲和力变构结合剂,导致选择两性霉素B和雷帕霉素。NMR测定证实了两种药物的结合和构象破坏作用,同时它们还逆转了应激诱导的CLIC4的膜易位并抑制了内皮细胞迁移。结构和动力学模拟研究进一步表明,这些化合物的抑制机制取决于催化谷胱甘肽(GSH)样位点环和延伸的催化β环的变构调节,这可能引起对CLIC4催化活性的干扰。来自本研究的基于结构的见解为CLIC4的选择性靶向治疗相关病理提供了基础。
    The use of computer-aided methods have continued to propel accelerated drug discovery across various disease models, interestingly allowing the specific inhibition of pathogenic targets. Chloride Intracellular Channel Protein 4 (CLIC4) is a novel class of intracellular ion channel highly implicated in tumor and vascular biology. It regulates cell proliferation, apoptosis and angiogenesis; and is involved in multiple pathologic signaling pathways. Absence of specific inhibitors however impedes its advancement to translational research. Here, we integrate structural bioinformatics and experimental research approaches for the discovery and validation of small-molecule inhibitors of CLIC4. High-affinity allosteric binders were identified from a library of 1615 Food and Drug Administration (FDA)-approved drugs via a high-performance computing-powered blind-docking approach, resulting in the selection of amphotericin B and rapamycin. NMR assays confirmed the binding and conformational disruptive effects of both drugs while they also reversed stress-induced membrane translocation of CLIC4 and inhibited endothelial cell migration. Structural and dynamics simulation studies further revealed that the inhibitory mechanisms of these compounds were hinged on the allosteric modulation of the catalytic glutathione (GSH)-like site loop and the extended catalytic β loop which may elicit interference with the catalytic activities of CLIC4. Structure-based insights from this study provide the basis for the selective targeting of CLIC4 to treat the associated pathologies.
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  • 文章类型: Journal Article
    一品红的抗菌和细胞毒活性,馏分和纯化合物进行了评估。HCT116,HePG2和MCF7的细胞毒性测定显示出显着的IC50:分别针对HCT116和HePG2的非极性部分“正己烷”54.7和76.2µg/mL。抗菌结果表明,与总提取物(其中正丁醇和乙酸乙酯部分对测试的细菌菌株显示出显著的抗菌活性(P<0.05))相比,植物部分对测试的病原体显示出显著的潜力。从正己烷和正丁醇馏分中进行化合物的分离和结构测定。从正己烷馏分中,29-nor-环artan醇(1),lanost-8-en-3-ol(2a),环artan醇(2b)和kampferol-3,4'-二甲醚(3)被分离和结构鉴定,GC-MS初步鉴定了24个化合物。从极性正丁醇馏分中,4-O-β-D-吡喃葡萄糖基-2-羟基-6-甲氧基苯乙酮(4),4-O-α-L-鼠李糖基-(1→6)-β-D-吡喃葡萄糖基-2-羟基-6甲氧基-苯乙酮(5),分配槲皮素-3-O-吡喃葡萄糖苷(6)和异奥林(7)。通过核磁共振(NMR)谱和质谱确定所得化合物的结构。除化合物1和5外,所有报道的化合物均具有抗菌效率。化合物2对粪肠球菌(22±0.13mm)显示出选择性最高的活性,同时,4-O-β-D-吡喃葡萄糖基-2-羟基-6-甲氧基苯乙酮(4)对测试革兰氏阳性和革兰氏阴性细菌的MIC为1.15-1.88mg/mL。细胞毒性分析表明,kampferol-3,4'-二甲醚(3)表现出最高的活性,IC50值与阿霉素相匹配;对HCT116,HePG2和MCF7分别为111.46、42.67和44.90µM,然而,它对视网膜正常细胞系RPE1有毒。
    Antibacterial and cytotoxic activities of Euphorbia balsamifera, fractions and pure compounds were evaluated. The cytotoxic assays for HCT116, HePG2 and MCF7 showed a significant IC50: 54.7 and 76.2 µg/mL of non-polar fraction \"n-hexane\" against HCT116 and HePG2, respectively. Antibacterial results revealed that plant fractions exhibited significant potential against the tested pathogens than the total extract where n-butanol and ethyl acetate fractions showed significant antibacterial activity (P < 0.05) against tested bacterial strains. Isolation and structure determination of compounds from n-hexane and n-butanol fractions were performed. From n-hexane fraction, 29-nor-cycloartanol (1), lanost-8-en-3-ol (2a), cycloartanol (2b) and kampferol-3,4\'-dimethyl ether (3) were isolated and structurally identified, along with 24 compounds were tentatively identified by GC-MS. From the polar n-butanol fraction, 4-O-β-D-glucopyranosyl-2-hydroxy-6-methoxyacetophenone (4), 4-O-α-L-rhamnosyl-(1 → 6)-β-D-glucopyranosyl-2-hydroxy-6methoxy-acetophenone (5), quercetin-3-O-glucopyranoside (6) and isoorientin (7) were assigned. Structures of the obtained compounds were determined by nuclear magnetic resonance (NMR) spectroscopy and mass spectrometry. Except compounds 1 and 5, all reported compounds announced antibacterial efficiency. Compound 2 showed selectively the highest activity against Enterococcus faecalis (22 ± 0.13 mm), meanwhile 4-O-β-D-glucopyranosyl-2-hydroxy-6-methoxyacetophenone (4) showed broadly the highest antibacterial activity with MIC of 1.15-1.88 mg/mL against the test Gram-positive and Gram-negative bacteria. Cytotoxic assays indicated that kampferol-3,4\'-dimethyl ether (3) exhibited the highest activity with matching IC50 values to doxorubicin; 111.46, 42.67 and 44.90 µM against HCT116, HePG2 and MCF7, respectively, however, it is toxic on retina normal cell line RPE1.
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  • 文章类型: Journal Article
    角膜营养不良是一组遗传遗传性疾病,其TGFBI基因突变会影响Bowman膜和角膜基质。突变型TGFBIp高度易于聚集并沉积在角膜中。根据突变的类型,蛋白质沉积物可能会有所不同(淀粉样蛋白,无定形粉状骨料或两者的混合形式),使角膜不透明,从而降低视敏度。发现突变蛋白的聚集是特异性的,具有不同于角膜的独特聚集机制。据报道,与WT蛋白相比,突变蛋白的蛋白水解加工不同。突变蛋白的蛋白水解加工产生高度淀粉样多肽片段。目前的治疗选择,可供患者使用,与高复发率相关的组织置换手术。对于角膜营养不良患者的简单治疗选择的临床需要已经变得非常必要,以防止蛋白质聚集或溶解预先形成的聚集体。这里,我们报告了使用弱亲和色谱(WAC)从MaybridgeRO3片段库中筛选2500种化合物。通过15N-HSQCNMR测定验证来自WAC的初级命中,并鉴定结合的特定区域。重组突变蛋白(R555W和H572R的第4个FAS-1结构域)与通过NMR测定鉴定的先导化合物一起通过胰蛋白酶进行有限的蛋白水解。铅化合物(MO07617,RJF00203和,BTB05094)可有效延迟/防止R555W突变体中淀粉样肽的产生,化合物(RJF00203和BTB05094)可有效延迟/防止H572R突变体中淀粉样肽的产生。因此,本文报道的先导化合物在进一步验证和/或修饰后,可能被建议作为潜在的治疗选择,通过抑制TGFBI-角膜营养不良中淀粉样肽的形成来预防/延迟聚集。
    Corneal dystrophies are a group of genetically inherited disorders with mutations in the TGFBI gene affecting the Bowman\'s membrane and the corneal stroma. The mutant TGFBIp is highly aggregation-prone and is deposited in the cornea. Depending on the type of mutation the protein deposits may vary (amyloid, amorphous powdery aggregate or a mixed form of both), making the cornea opaque and thereby decreases visual acuity. The aggregation of the mutant protein is found to be specific with a unique aggregation mechanism distinct to the cornea. The proteolytic processing of the mutant protein is reported to be different compared to the WT protein. The proteolytic processing of mutant protein gives rise to highly amyloidogenic peptide fragments. The current treatment option, available for patients, is tissue replacement surgery that is associated with high recurrence rates. The clinical need for a simple treatment option for corneal dystrophy patients has become highly essential either to prevent the protein aggregation or to dissolve the preformed aggregates. Here, we report the screening of 2500 compounds from the Maybridge RO3 fragment library using weak affinity chromatography (WAC). The primary hits from WAC were validated by 15N-HSQC NMR assays and specific regions of binding were identified. The recombinant mutant proteins (4th FAS-1 domain of R555W and H572R) were subjected to limited proteolysis by trypsin together with the lead compounds identified by NMR assays. The lead compounds (MO07617, RJF00203 and, BTB05094) were effective to delay/prevent the generation of amyloidogenic peptides in the R555W mutant and compounds (RJF00203 and BTB05094) were effective to delay/prevent the generation of amyloidogenic peptides in the H572R mutant. Thus the lead compounds reported here upon further validation and/or modification might be proposed as a potential treatment option to prevent/delay aggregation by inhibiting the formation of amyloidogenic peptides in TGFBI-corneal dystrophy.
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