HCR

HCR
  • 文章类型: Journal Article
    级联扩增在许多疾病的分子诊断和预防中显示出检测痕量靶miRNA的有希望的潜力。在这项研究中,选择miRNA21作为靶标,基于滚环扩增(RCA)的DNA纳米支架与靶触发的RNA裂解DNA酶整合,以灵敏检测miRNA21。也就是说,H1探针与RCA的长链产物结合,自组装成DNA纳米支架。靶miRNA21触发了位于纳米支架上的杂交链反应(HCR),并导致在H2探针两端修饰的DNA酶片段快速接近,有效地实现了自猝灭底物探针的循环裂解,荧光信号恢复。结果表明,拟议的测定法是灵敏的,可以检测到0.76pM的miRNA21。所提出的方法是特异性的;只有一个碱基的错配miRNA21可以被有效地识别,其他核酸序列和血清基质没有造成任何干扰。拟议的测定法是准确的;加标的胎牛血清(FBS)的回收率为82.1%至115.0%。DNA纳米支架和DNA酶的灵活和可编程特性为更灵敏的核酸检测提供了一个自信和强大的策略,并且可以开发为检测仅需要对HCR中H1探针的相应序列进行修饰的其他miRNA的通用传感平台。
    Cascaded amplification showed promising potential for detection of trace target miRNAs in molecular diagnosis and prevention of many diseases. In this study, miRNA21 was chosen as the target, and rolling circle amplification (RCA)-based DNA nanoscaffold was integrated with target triggered RNA-cleaving DNAzyme for sensitive detection of miRNA21. That is, the H1 probe was bound with the long-chain product of RCA to self-assemble into DNA nanoscaffold. Target miRNA21 triggered the hybridization chain reaction (HCR) located on the nanoscaffold, and led to rapid proximity of DNAzyme fragments modified at both ends of the H2 probe, which realized the cyclic cleavage of self-quenching substrate probe efficiently, and the fluorescence signal was restored. The results demonstrated that the proposed assay was sensitive, 0.76 pM of miRNA21 can be detected. The proposed assay was specific; only one-base mismatched miRNA21 can be effectively recognized, other nucleic acid sequence and the serum matrix did not cause any interference. The proposed assay was accurate; recoveries from 82.1 to 115.0% can be obtained in the spiked fetal bovine serum (FBS). The flexible and programmable characteristics of DNA nanoscaffold and DNAzyme provide a confident and robust strategy for more sensitive nucleic acid detection, and can be developed to be a universal sensing platform for detecting other miRNAs just needing modification on the corresponding sequence of H1 probe in HCR.
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  • 文章类型: Journal Article
    毒液是整个动物王国发现的一项非凡的创新,然而,毒液系统在不同群体中的进化起源,包括蜘蛛,仍然神秘。这里,我们调查了普通家蜘蛛的毒液器官的发生,假单胞菌。毒液装置由一对分泌腺组成,每个都通过一条穿过龟头的管道连接到方头的开口。我们进行了大量RNA-seq以鉴定毒腺特异性标志物,并在整个时间序列上使用RNA原位杂交实验测定了它们的表达。这些揭示了腺体原基在胚胎期13在龟头出现,在胚胎发育结束时向近侧进展,并在卵裂后延伸到前瘤。晚期胚胎中重要毒素成分的表达开始标志着毒液分泌细胞的激活。我们选择的标记在成年毒腺中也表现出不同的表达模式:鼠尾草和毒素标记在分泌上皮中表达,叉头和sum-1在周围的肌肉层,而无远端主要在腺体末端表达。我们的研究首次全面分析了蜘蛛的毒腺形态发生,提供有关其演变和发展的关键见解。
    Venom is a remarkable innovation found across the animal kingdom, yet the evolutionary origins of venom systems in various groups, including spiders, remain enigmatic. Here, we investigated the organogenesis of the venom apparatus in the common house spider, Parasteatoda tepidariorum. The venom apparatus consists of a pair of secretory glands, each connected to an opening at the fang tip by a duct that runs through the chelicerae. We performed bulk RNA-seq to identify venom gland-specific markers and assayed their expression using RNA in situ hybridisation experiments on whole-mount time-series. These revealed that the gland primordium emerges during embryonic stage 13 at the chelicera tip, progresses proximally by the end of embryonic development and extends into the prosoma post-eclosion. The initiation of expression of an important toxin component in late postembryos marks the activation of venom-secreting cells. Our selected markers also exhibited distinct expression patterns in adult venom glands: sage and the toxin marker were expressed in the secretory epithelium, forkhead and sum-1 in the surrounding muscle layer, while Distal-less was predominantly expressed at the gland extremities. Our study provides the first comprehensive analysis of venom gland morphogenesis in spiders, offering key insights into their evolution and development.
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  • 文章类型: Journal Article
    基于Co3O4/MoS2/Au纳米复合材料和杂化链式反应(HCR)的组合,使用电化学传感器快速,灵敏地检测玉米赤霉烯酮(ZEN)。玻碳电极用Co3O4/MoS2/Au纳米材料包被,以固定通过碱基互补配对原理与ZEN-Apt结合的ZEN-cDNA。如果没有禅宗,HCR不能被触发,因为ZEN-cDNA不能被暴露.将ZEN添加到电极表面后,通过ZEN和ZEN-Apt的组合在修饰电极上产生了复杂的结构。因此,ZEN-cDNA可以提高HCR以产生长链dsDNA结构。由于dsDNA的形成,亚甲基蓝(MB)可以插入到分支DNA的超结构中,并且MB氧化还原信号的峰值电流急剧增加。因此,可以通过信号强度的变化来检测ZEN的浓度。在优化条件下,所开发的电化学生物传感策略显示出优异的线性检测范围为1.0×10-10mol/L至1.0×10-6mol/L,低检测限(LOD)为8.5×10-11mol/L,具有理想的选择性和稳定性。因此,该装配式平台在食品安全领域具有巨大的应用潜力,医疗检测,和药物分析。
    An electrochemical aptasensor was used for the fast and sensitive detection of zearalenone (ZEN) based on the combination of Co3O4/MoS2/Au nanocomposites and the hybrid chain reaction (HCR). The glassy carbon electrode was coated with Co3O4/MoS2/Au nanomaterials to immobilize the ZEN-cDNA that had been bound with ZEN-Apt by the principle of base complementary pairing. In the absence of ZEN, the HCR could not be triggered because the ZEN-cDNA could not be exposed. After ZEN was added to the surface of the electrode, a complex structure was produced on the modified electrode by the combination of ZEN and ZEN-Apt. Therefore, the ZEN-cDNA can raise the HCR to produce the long-strand dsDNA structure. Due to the formation of dsDNA, the methylene blue (MB) could be inserted into the superstructure of branched DNA and the peak currents of the MB redox signal dramatically increased. So the concentration of ZEN could be detected by the change of signal intensity. Under optimized conditions, the developed electrochemical biosensing strategy showed an outstanding linear detection range of 1.0×10-10 mol/L to 1.0×10-6 mol/L, a low detection limit (LOD) of 8.5×10-11 mol/L with desirable selectivity and stability. Therefore, the fabricated platform possessed a great application potential in fields of food safety, medical detection, and drug analysis.
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  • 文章类型: Journal Article
    N6-甲基腺苷(6mA)在多种生物过程中起着关键作用,包括癌症,细菌毒素分泌,和细菌耐药性。然而,到目前为止,还没有一个选择性的,敏感,和简单的方法定量检测6mA在单碱基分辨率。在这里,我们提出了一种基于转录激活因子样效应子(TALE)的特异性识别的系列压电石英晶体(SPQC)传感器,用于6mA的基因座特异性检测。通过结合银染使用杂交链式反应(HCR)来增强检测灵敏度。该传感器的检测限(LOD)为0.63pM,可以区分单碱基错配。我们通过在生物基质中的特定位点定量6mADNA来证明传感器平台的适用性。本文提出的SPQC传感器为深入研究癌症提供了一个有前途的平台,细菌毒素分泌,和细菌耐药性。
    N6-methyladenosine (6mA) plays a pivotal role in diverse biological processes, including cancer, bacterial toxin secretion, and bacterial drug resistance. However, to date there has not been a selective, sensitive, and simple method for quantitative detection of 6mA at single base resolution. Herein, we present a series piezoelectric quartz crystal (SPQC) sensor based on the specific recognition of transcription-activator-like effectors (TALEs) for locus-specific detection of 6mA. Detection sensitivity is enhanced through the use of a hybridization chain reaction (HCR) in conjunction with silver staining. The limit of detection (LOD) of the sensor was 0.63 pM and can distinguish single base mismatches. We demonstrate the applicability of the sensor platform by quantitating 6mA DNA at a specific site in biological matrix. The SPQC sensor presented herein offers a promising platform for in-depth study of cancer, bacterial toxin secretion, and bacterial drug resistance.
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  • 文章类型: Journal Article
    这篇文章详细介绍了一个用于检测microRNAs(miRNAs)的突破性平台,参与基因调控并与各种疾病相关的关键生物分子。该创新平台将CRISPR-Cas13a系统特异性靶向和切割RNA分子的精确能力与杂交链式反应(HCR)的扩增能力相结合。HCR通过创建分支DNA结构来帮助信号增强。此外,该平台采用电化学发光(ECL)进行检测,以其高灵敏度和低背景噪声而著称,使其特别有效。这项技术的关键应用是检测miR-17,一种与多种癌症类型相关的生物标志物。它具有卓越的检测能力,具有低检测限(14.38aM)和高特异性。此外,该平台能够区分相似的miRNA序列并准确定量细胞裂解物中的miR-17,这凸显了其在临床和生物医学领域的巨大潜力。这种精确瞄准的组合,信号放大,和灵敏检测将平台定位为医学诊断和研究中miRNA分析的强大工具。
    The article details a groundbreaking platform for detecting microRNAs (miRNAs), crucial biomolecules involved in gene regulation and linked to various diseases. This innovative platform combines the CRISPR-Cas13a system\'s precise ability to specifically target and cleave RNA molecules with the amplification capabilities of the hybridization chain reaction (HCR). HCR aids in signal enhancement by creating branched DNA structures. Additionally, the platform employs electrochemiluminescence (ECL) for detection, noted for its high sensitivity and low background noise, making it particularly effective. A key application of this technology is in the detection of miR-17, a biomarker associated with multiple cancer types. It exhibits remarkable detection capabilities, characterized by low detection limits (14.38 aM) and high specificity. Furthermore, the platform\'s ability to distinguish between similar miRNA sequences and accurately quantify miR-17 in cell lysates underscores its significant potential in clinical and biomedical fields. This combination of precise targeting, signal amplification, and sensitive detection positions the platform as a powerful tool for miRNA analysis in medical diagnostics and research.
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  • 文章类型: Journal Article
    根据DNA编程的特点,大产量的级联核酸扩增技术可以克服单核酸扩增技术灵敏度不足的问题,同时结合了两种甚至多种核酸扩增技术的优点。在这项工作中,提出了一种新的链置换扩增(SDA)和级联杂交链反应(HCR)的级联信号扩增策略,用于痕量检测hAAG和VEGF165。HAAG诱导的SDA在聚苯乙烯(PS)纳米球上产生大量的S2打开H2,从而触发级联HCR以形成具有丰富荧光(FL)信号探针(565nm)的DNA树突状纳米结构。它可以实现FL信号的放大,用于hAAG的检测。此外,许多阿霉素(Dox)被加载到DNA树突状纳米结构的GC碱基中,其FL信号被有效屏蔽。VEGF165特异性结合其适体以形成G-四链体结构,其释放Dox以产生用于检测VEGF165的高FL信号(590nm)。这项工作开发了一种独特的多功能DNA树突状纳米结构荧光探针,并巧妙地设计了一种新的“开-关”开关策略,用于对癌症标志物进行灵敏的痕量检测。
    According to the characteristics of DNA programming, the cascaded nucleic acid amplification technology with larger output can overcome the problem of insufficient sensitivity of single nucleic acid amplification technology, and it combines the advantages of two or even multiple nucleic acid amplification technologies at the same time. In this work, a novel cascade signal amplification strategy with strand displacement amplification (SDA) and cascade hybridization chain reaction (HCR) was proposed for trace detection of hAAG and VEGF165. HAAG-induced SDA produced a large amount of S2 to open H2 on Polystyrene (PS) nanospheres, thereby triggering cascade HCR to form DNA dendritic nanostructures with rich fluorescence (FL) signal probes (565 nm). It could realize the amplification of FL signals for the detection of hAAG. Moreover, many doxorubicin (Dox) were loaded into the GC bases of DNA dendritic nanostructures, and its FL signal was effectively shielded. VEGF165 specifically bound to its aptamer to form G-quadruplex structures, which released Dox to produce a high FL signal (590 nm) for detection of VEGF165. This work developed a unique multifunctional DNA dendritic nanostructure fluorescence probe, and cleverly designed a new \"On-off\" switch strategy for sensitive trace detection of cancer markers.
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  • 文章类型: Journal Article
    由细菌引起的食源性疾病威胁着人类健康。在这里,我们通过结合DNA行走和杂交链反应(HCR)提出了一种新的荧光传感器,以方便和灵敏地定量细菌。金黄色葡萄球菌(S。选择金黄色葡萄球菌)作为目标。当系统中有目标时,金黄色葡萄球菌与其适体的结合导致适体/DNAwalker在AuNPs表面崩解并释放DNAwalker。在Nt的帮助下。Bsmai,DNA行走器沿着AuNP的表面移动,触发探针从AuNP上脱离。触发探针可以启动杂交链反应(HCR)并打开H1@AuNPs探针和H2@AuNPs探针的茎。添加切口核酸内切酶后,相邻的上转换纳米粒子(UCNPs,NaYF4:Yb3+,Er3)远离H1和H2的猝灭剂(AuNP)。因此,UCNPs的荧光强度可以通过荧光共振能量转移(FRET)恢复。因此,通过记录UCNP的荧光强度来检测细菌。此方法简单,快速和敏感。它可以在低背景信号中直接检测细菌。检测限(LOD)为10CFU/mL,检测时间小于3小时。模拟牛奶中的回收率,蜂蜜和人血清样本范围为93.6%至105.8%。该战略为疾病的早期诊断和食品监测开辟了新的途径。
    Food-borne diseases caused by bacteria threaten human health. Herein, we presented a new fluorescent aptasensor by coupling DNA walking and hybridization chain reaction (HCR) for convenient and sensitive quantification of bacteria. Staphylococcus aureus (S. aureus) was selected as target. When there was target in the system, the binding of S. aureus with its aptamer caused the disintegration of aptamer/DNA walker on the surface of AuNPs and released DNA walker. With the help of Nt.BsmAI, DNA walker moved along the surface of AuNPs and trigger probe was detached from AuNPs. The trigger probe could initiate hybridization chain reaction (HCR) and opened the stems of H1@AuNPs probe and H2@AuNPs probe. After the addition of nicking endonuclease, the adjacent upconversion nanoparticles (UCNPs, NaYF4:Yb3+, Er3+) were further away from the quenchers (AuNPs) of H1 and H2. Therefore, the fluorescence intensity of UCNPs could be restored via fluorescence resonance energy transfer (FRET). Bacteria were thus detected by recording the fluorescence intensity of UCNPs. This method is simple, rapid and sensitive. It can directly detect bacteria in a low background signal. The limit of detection (LOD) was 10 CFU/mL, detection time was less than 3 h. Recovery rates in simulated milk, honey and human serum samples ranged from 93.6 % to 105.8 %. The strategy opens up new paths for early diagnosis of diseases and food monitoring.
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  • 文章类型: Journal Article
    微创心脏手术似乎是未来。心脏病专家越来越需要它,并且感知优越性的患者也要求它。全世界越来越多地采用最小通路冠状动脉血运重建术。这里,我们回顾了微创冠状动脉血运重建的历史,发现它几乎与心脏手术史一样古老.现代微创冠状动脉血运重建有多种形式,即微创直接冠状动脉旁路移植术(MIDCAB)。混合冠状动脉血运重建术(HCR),全内镜冠状动脉旁路移植术(TECAB)。值得注意的是,最小通道冠状动脉手术的命名和方法存在显着差异,这确实为比较不同的方法提出了挑战。然而,这些方法的频率越来越高,和支持者为他们的患者展示了明显的优势。仍然存在的挑战,至于所有手术领域,证明了这些技术优于经过试验和测试的开放技术,这是非常困难的。很少有随机对照试验来帮助回答这个问题,以及微创冠状动脉血运重建的未来,在某种程度上,依赖于这样的试验。谢天谢地,有些正在进行中,结果令人热切期待。
    Minimal-access cardiac surgery appears to be the future. It is increasingly desired by cardiologists and demanded by patients who perceive superiority. Minimal-access coronary artery revascularisation has been increasingly adopted throughout the world. Here, we review the history of minimal-access coronary revascularization and see that it is almost as old as the history of cardiac surgery. Modern minimal-access coronary revascularization takes a variety of forms-namely minimal-access direct coronary artery bypass grafting (MIDCAB), hybrid coronary revascularisation (HCR), and totally endoscopic coronary artery bypass grafting (TECAB). It is noteworthy that there is significant variation in the nomenclature and approaches for minimal-access coronary surgery, and this truly presents a challenge for comparing the different methods. However, these approaches are increasing in frequency, and proponents demonstrate clear advantages for their patients. The challenge that remains, as for all areas of surgery, is demonstrating the superiority of these techniques over tried and tested open techniques, which is very difficult. There is a paucity of randomised controlled trials to help answer this question, and the future of minimal-access coronary revascularisation, to some extent, is dependent on such trials. Thankfully, some are underway, and the results are eagerly anticipated.
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  • 文章类型: Journal Article
    棕榈酰化在调节蛋白质运输中起重要作用,稳定性,和活动。蛋白质棕榈酰化研究的主要困境是缺乏特异性和灵敏的工具来可视化蛋白质特异性棕榈酰化。尽管通过代谢标记的棕榈酸和抗体识别的靶蛋白探索了FRET方法。由于供体和受体位于膜的不同侧,跨膜策略遭受低FRET效率。在这里,我们提出了一种顺膜多荧光共振能量转移(多FRET),用于通过代谢标记和靶向识别来放大特定棕榈酰化蛋白的可视化。叠氮-棕榈酸(叠氮-PA)代谢掺入细胞棕榈酰化蛋白,然后通过无铜点击化学与二苄基环辛炔修饰的Cy5(DBCO-Cy5)反应。蛋白质探针通过特异性肽识别与目标蛋白质连接,其启动杂交链式反应(HCR)扩增过程。顺式膜标记方法能够实现有效的分子内供体-受体距离并允许增加FRET效率。同时,HCR扩增触发了多FRET现象,具有显著提高的FRET效率。有了优势,该策略实现了棕榈酰化PD-L1的增强FRET成像,并显示了药物治疗下PD-L1的棕榈酰化变化.此外,所建立的方法成功地扩增了PD-L1棕榈酰化在体内和小鼠肿瘤切片的可视化。我们设想该方法将提供一个有用的平台来研究棕榈酰化对蛋白质结构和功能的影响。
    Palmitoylation plays an important role in modulating protein trafficking, stability, and activity. The major predicament in protein palmitoylation study is the lack of specific and sensitive tools to visualize protein-specific palmitoylation. Although FRET approach was explored by metabolically labeled palmitic acid and antibody recognized target protein. The trans-membrane strategy suffers from low FRET efficiency due to the donor and acceptor located at different sides of membrane. Herein, we proposed a cis-membrane multi-fluorescence resonance energy transfer (multi-FRET) for amplified visualization of specific palmitoylated proteins through metabolic labeling and targeted recognition. The azido-palmitic acid (azido-PA) was metabolically incorporated into cellular palmitoylated proteins, followed by reacting with dibenzylcylooctyne-modified Cy5 (DBCO-Cy5) through copper-free click chemistry. The protein probe was attached to targeted protein by specific peptide recognition, which initiates a hybridization chain reaction (HCR) amplification process. The cis-membrane labeling method enables effective intramolecular donor-acceptor distance and allow to increase FRET efficiency. Simultaneously, HCR amplification triggered multi-FRET phenomenon with significantly improved FRET efficiency. With the superiority, this strategy has achieved the enhanced FRET imaging of palmitoylated PD-L1 and visualizing the palmitoylation changes of on PD-L1 under drug treatment. Furthermore, the established method successfully amplified visualization of PD-L1 palmitoylation in vivo and mice tumor slice. We envision the approach would provide a useful platform to investigate the effects of palmitoylation on the protein structure and function.
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  • 文章类型: Journal Article
    合成了一种新型的三维(3D)多孔氮-硫共掺杂碳(N-S-C)网格,并首次将其用作猝灭材料,构建了用于曲霉毒素A(OTA)检测的荧光传感器。通过使用cDNA作为启动子触发杂交链反应(HCR),开发了具有无酶信号扩增策略的荧光aptasensor,这有效地提高了这种aptasensor的灵敏度。在没有OTA的情况下,3D多孔N-S-C网可以吸附羧基荧光素FAM标记的发夹DNA1(H1-FAM)和发夹DNA2(H2),并猝灭FAM的荧光。在OTA面前,OTA特异性结合适体链并且DNA双链体经历解离。释放的cDNA又充当HCR的启动子,H1-FAM和H2的链组装由启动子触发,通过HCR产生长链DNA聚合物,导致荧光信号增加。在最优条件下,lgCOTA与荧光强度差异在0.01-500ng/mL范围内呈良好的线性关系(R2=0.993),检出限为2.7pg/mL。所设计的传感器平台用于测定花生中的加标OTA,小麦粉,玉米粉,红茶,和葡萄酒的回收率在94.4-119.6%之间。
    A novel three-dimensional (3D) porous nitrogen-sulfur co-doped carbon (N-S-C) mesh was synthesized and used for the first time as the quenching material to construct a fluorescent aptasensor for ochratoxin A (OTA) detection. The fluorescent aptasensor with enzyme-free signal amplification strategy was developed by using cDNA as a promoter to trigger hybridization chain reaction (HCR), which effectively improved the sensitivity of this aptasensor. In the absence of OTA, 3D porous N-S-C mesh can adsorb carboxyfluorescein FAM-labeled hairpin DNA1 (H1-FAM) and hairpin DNA2 (H2) and quench the fluorescence of FAM. In the presence of the OTA, the OTA specifically binds to the aptamer strand and the DNA duplex undergoes dissociation. The released cDNA in turn serves as a promoter for HCR, and the strand assembly of H1-FAM and H2 is triggered by the promoter to generate long-strand DNA polymers via HCR, resulting in an increasing fluorescent signal. Under optimal conditions, there was a good linear relationship between lgCOTA and fluorescence intensity difference in the range 0.01-500 ng/mL (R2 = 0.993), and the detection limit was 2.7 pg/mL. The designed sensor platform was applied to determine spiked OTA in peanut, wheat flour, corn flour, black tea, and wine with recoveries in the range of 94.4-119.6%.
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