Gryllidae

Gryllidae
  • 文章类型: Journal Article
    下一代测序技术现在可用于对自然历史收藏品中的历史标本进行测序,一种被称为博物馆组学的方法。博物馆组学允许从博物馆保存的旧标本中获得分子数据,尽管这些标本通常是命名类型的独特样本,对于解决科学问题至关重要,但生物分子的资源在很大程度上未得到充分利用。尽管最近的技术进步,板球有丝分裂基因组在数据库中仍然很少,每年从新鲜收集的材料中产生的新材料很少。
    在这项研究中,我们使用基因组撇脂方法对三个新的完整的有丝分裂基因组进行测序和组装,它们代表了板球亚科的两个部落:两个是从旧的,Xenogrylluslamottei(68岁)和X.maniema(80岁)的历史类型材料,第三个来自新收集的Nisitrusvittatus标本。我们比较了它们的基因组组织和碱基组成,并重建了Gryllidae家族的分子系统发育。
    我们的研究不仅证实了下一代测序使用的基因组撇脂方法使我们能够有效地从干钉的历史标本中获得整个有丝分裂基因组,但我们也证实了它是多么有希望的大规模比较研究的有丝分裂基因组利用资源从自然历史收集。在系统发育环境中使用的新有丝分裂基因组证明有丝分裂基因组数据包含有价值的信息,并且还强烈支持多个时间尺度的系统发育关系。
    UNASSIGNED: Next-generation sequencing technology can now be used to sequence historical specimens from natural history collections, an approach referred to as museomics. The museomics allows obtaining molecular data from old museum-preserved specimens, a resource of biomolecules largely underexploited despite the fact that these specimens are often unique samples of nomenclatural types that can be crucial for resolving scientific questions. Despite recent technical progress, cricket mitogenomes are still scarce in the databases, with only a handful of new ones generated each year from freshly collected material.
    UNASSIGNED: In this study, we used the genome skimming method to sequence and assemble three new complete mitogenomes representing two tribes of the cricket subfamily Eneopterinae: two were obtained from old, historical type material of Xenogryllus lamottei (68 years old) and X. maniema (80 years old), the third one from a freshly collected specimen of Nisitrus vittatus. We compared their genome organization and base composition, and reconstructed the molecular phylogeny of the family Gryllidae.
    UNASSIGNED: Our study not only confirmed that the genome skimming method used by next generation sequencing allows us to efficiently obtain the whole mitogenome from dry-pinned historical specimens, but we also confirmed how promising it is for large-scale comparative studies of mitogenomes using resources from natural history collections. Used in a phylogenetic context the new mitogenomes attest that the mitogenomic data contain valuable information and also strongly support phylogenetic relationships at multiple time scales.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    到2050年,全球人口预计将达到90亿,寻找替代蛋白质来源变得至关重要。这项研究评估了板球蛋白粉与乳清蛋白粉的消化率。与乳清蛋白粉相比,板球蛋白粉的蛋白质含量略低,但脂肪含量更高。虽然两者都含有所有必需氨基酸,他们的数量各不相同。两个样品中最丰富的必需氨基酸是亮氨酸。利用粗蛋白进行计算时,板球蛋白粉的必需氨基酸指数(EAAI)达到79%。当使用氨基酸总和计算方法时,增长了近13%。当基于粗蛋白计算时,乳清蛋白的EAAI为94%,使用氨基酸总和计算方法时观察到的略有增加。在肠道消化过程中,板球蛋白的消化率逐渐增加,达到近80%,而乳清蛋白消化率超过97%。尽管与乳清蛋白相比,板球蛋白的消化率较低,它仍然足够高,被认为是有价值的蛋白质来源。这项研究强调了板球蛋白的潜力,并强调了评估其蛋白质含量和消化率在评估其营养价值中的重要性。
    With the global population projected to reach nine billion by 2050, the search for alternative protein sources has become critical. This study evaluated the digestibility of cricket protein powder compared with that of whey protein powder. Cricket protein powder had a slightly lower protein content but higher fat content than whey protein powder. Although both contained all essential amino acids, their quantities varied. The most abundant essential amino acid was leucine in both samples. The essential amino acid index (EAAI) for cricket protein powder reached 79% when utilising crude protein for calculation. When using the amino acid sum calculation method, it increased by nearly 13%. The EAAI for whey protein was then 94% when calculated based on crude protein, with a slight increase observed when using the amino acid sum calculation method. Cricket protein exhibited a gradual increase in digestibility during intestinal digestion, reaching nearly 80%, whereas whey protein digestibility surpassed 97%. Despite the lower digestibility of cricket protein compared with whey protein, it remains sufficiently high for consideration as a valuable protein source. This study highlights the potential of cricket proteins and underscores the importance of assessing their protein content and digestibility in evaluating their nutritional value.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    近几十年来,由于许多原因,在食品工业中利用昆虫作为蛋白质来源产生了巨大影响。这种现象的重点主要是可持续性以及所提供的营养价值。昆虫的性别,特别是Achetadomesticus,与它们的营养价值严格相关,因此,能够根据其性别计算昆虫农场中Acheta数量的自动系统的可用性将对农场本身的可持续性产生重大影响。本文介绍了一种非接触式测量系统,用于Achetadomesticus农场的性别计数和识别。设计并实现了一个特定的测试台,以迫使the在透明管道内行进,通过能够捕获产卵器的高分辨率相机对它们进行构图,男性和女性之间的区别元素。考虑了影响个体识别和计数的所有可能的不确定性来源,并介绍了减轻其影响的方法。所提出的方法,计数误差为2.6%,性别估计误差为8.6%,可以对可持续食品工业产生重大影响。
    The exploitation of insects as protein sources in the food industry has had a strong impact in recent decades for many reasons. The emphasis for this phenomenon has its primary basis on sustainability and also to the nutritional value provided. The gender of the insects, specifically Acheta domesticus, is strictly related to their nutritional value and therefore the availability of an automatic system capable of counting the number of Acheta in an insect farm based on their gender will have a strong impact on the sustainability of the farm itself. This paper presents a non-contact measurement system designed for gender counting and recognition in Acheta domesticus farms. A specific test bench was designed and realized to force the crickets to travel inside a transparent duct, across which they were framed by means of a high-resolution camera able to capture the ovipositor, the distinction element between male and female. All possible sources of uncertainty affecting the identification and counting of individuals were considered, and methods to mitigate their effect were described. The proposed method, which achieves 2.6 percent error in counting and 8.6 percent error in gender estimation, can be of significant impact in the sustainable food industry.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    昼夜节律系统包括多个时钟,包括中央和外围时钟。中央时钟通常控制外围时钟以同步整个动物身体的昼夜节律。然而,外围时钟是否影响中央时钟尚不清楚。这个问题可以通过包括板球Gryllusbimaculatus中的外围时钟(复眼时钟[CE时钟])和中央时钟(视瓣[OL]时钟)的系统来解决。我们先前发现复眼调节自由运行周期(τ)和由OL时钟驱动的运动节律的稳定性,通过在30°C下τ的日偏差测量。然而,CE时钟在这一规定中的作用仍未被探索。在这项研究中,我们使用定位于复眼的周期(每个)基因(perCE-RNAi)的RNA干扰(RNAi)研究了CE时钟在该调控中的重要性。perCE-RNAi消除了视网膜电图(ERG)振幅和时钟基因表达的复眼节律,但保持了由OL时钟驱动的运动节律。与用dsDsRed2处理的对照s相比,测试s的运动节律显示出明显更长的τ和更大的τ日变化。τ的变化与视神经切断的of的变化相当。τ长得多,但与视神经切断的the相当。这些结果表明CE时钟调节OL时钟以维持和稳定τ。
    The circadian system comprises multiple clocks, including central and peripheral clocks. The central clock generally governs peripheral clocks to synchronize circadian rhythms throughout the animal body. However, whether the peripheral clock influences the central clock is unclear. This issue can be addressed through a system comprising a peripheral clock (compound eye clock [CE clock]) and central clock (the optic lobe [OL] clock) in the cricket Gryllus bimaculatus. We previously found that the compound eye regulates the free-running period (τ) and the stability of locomotor rhythms driven by the OL clock, as measured by the daily deviation of τ at 30°C. However, the role of the CE clock in this regulation remains unexplored. In this study, we investigated the importance of the CE clock in this regulation using RNA interference (RNAi) of the period (per) gene localized to the compound eye (perCE-RNAi). The perCE-RNAi abolished the compound eye rhythms of the electroretinogram (ERG) amplitude and clock gene expression but the locomotor rhythm driven by the OL clock was maintained. The locomotor rhythm of the tested crickets showed a significantly longer τ and greater daily variation of τ than those of control crickets treated with dsDsRed2. The variation of τ was comparable with that of crickets with the optic nerve severed. The τ was considerably longer but was comparable with that of crickets with the optic nerve severed. These results suggest that the CE clock regulates the OL clock to maintain and stabilize τ.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    新兴的适应性变异如何相互作用是野生种群进化的重要因素,但是实证研究这种相互作用的机会很少。我们最近记录了夏威夷野外of(Teleogryllusoceanicus)种群中适应性表型“卷曲翼”的出现。卷曲的翅膀抑制男性的歌唱能力,保护它们免受偷听类寄生虫的苍蝇(Ormiaochracea)。令人惊讶的是,卷曲翼与多个种群中类似的保护性沉默“平翼”表型同时发生,两种表型都没有扩散到固定。这两种表型经常共表达,但是由于要么充分降低歌曲振幅来逃避飞行,他们的共同表达不会带来额外的健身益处。已知许多“脱靶”表型变化伴随着平翼,我们发现卷曲的翅膀,也是,在实验室条件下,对男性的求爱能力产生负面影响,并影响女性的质量和存活率。我们通过杂交,基因组和mRNA测序表明,卷曲的表达与单个常染色体的变异有关。在平翼的平行分析中,我们的结果加强了以前的X连锁单基因座遗传的发现.通过将对这些替代表型的遗传结构的见解与模拟和现场观察相结合,我们表明,这两种改编的共存阻碍了两者的修复,尽管有极端的健身益处,由于健身上位。在同一种群中相似的适应性形式的共同出现可能比通常认为的更为普遍,并且可能是抑制有性繁殖生物野生种群适应性进化的重要力量。
    How emerging adaptive variants interact is an important factor in the evolution of wild populations, but the opportunity to empirically study this interaction is rare. We recently documented the emergence of an adaptive phenotype \"curly-wing\" in Hawaiian populations of field crickets (Teleogryllus oceanicus). Curly-wing inhibits males\' ability to sing, protecting them from eavesdropping parasitoid flies (Ormia ochracea). Surprisingly, curly-wing co-occurs with similarly protective silent \"flatwing\" phenotypes in multiple populations, in which neither phenotype has spread to fixation. These two phenotypes are frequently coexpressed, but since either sufficiently reduces song amplitude to evade the fly, their coexpression confers no additional fitness benefit. Numerous \"off-target\" phenotypic changes are known to accompany flatwing, and we find that curly-wing, too, negatively impacts male courtship ability and affects mass and survival of females under lab conditions. We show through crosses and genomic and mRNA sequencing that curly-wing expression is associated with variation on a single autosome. In parallel analyses of flatwing, our results reinforce previous findings of X-linked single-locus inheritance. By combining insights into the genetic architecture of these alternative phenotypes with simulations and field observations, we show that the co-occurrence of these two adaptations impedes either from fixing, despite extreme fitness benefits, due to fitness epistasis. This co-occurrence of similar adaptive forms in the same populations might be more common than is generally considered and could be an important force inhibiting adaptive evolution in wild populations of sexually reproducing organisms.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    有机磷酸酯(OP)和氨基甲酸酯(CM)农药的广泛使用需要有效且具有成本效益的检测方法。这项研究介绍了一种使用the胆碱酯酶(ChE)检测OP和CM残留的微量电测量方法,提供了一个快速和经济的替代传统的色谱技术。方法的参数,包括底物浓度,孵育温度,和孵化时间,进行了优化。通过利用板球ChE对OP和CM抑制的敏感性,这种方法将酶抑制转化为电信号来量化农药水平,实现了令人印象深刻的检测限(LOD)从0.036到0.086ppm。该方法具有良好的重现性和稳定性,使其适用于各种环境矩阵的现场应用和现场测试。这项研究代表了农药残留分析的重大进展,在开发用于实时环境监测和公共卫生保护的便携式生物传感器设备方面具有潜在的应用。
    The widespread use of organophosphate (OP) and carbamate (CM) pesticides requires efficient and cost-effective detection methods. This study introduces a micro-electrometric method using cricket cholinesterase (ChE) to detect OP and CM residues, providing a rapid and economical alternative to conventional chromatographic techniques. The parameters of the method, including the substrate concentration, incubation temperature, and incubation time, were optimized. By leveraging the sensitivity of cricket ChE to OP and CM inhibition, this approach translates enzyme inhibition into an electrical signal to quantify pesticide levels, achieving an impressive limit of detection (LOD) from 0.036 to 0.086 parts per million (ppm). This method demonstrated reproducibility and stability, making it suitable for field applications and on-site testing across various environmental matrices. This research represents a significant advancement in pesticide residue analysis with potential applications in the development of portable biosensor devices for real-time environmental monitoring and public health protection.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    在最近的昆虫营养研究中,对the进行了广泛的研究,但它们如何平衡多种营养素的摄入,在很大程度上仍未被探索。这里,我们使用营养几何框架来检查二斑板球若虫的饮食蛋白质和碳水化合物的行为和生理调节,双叶燕尾草(直翅目:燕尾科)。增长,摄入量,利用效率,从接受食物对或蛋白质和碳水化合物含量不同的单一食物的八龄若虫中测量身体成分。当食物可供选择时,the优先选择1:1.74的碳水化合物偏向的蛋白质:碳水化合物(P:C)比率。在这个营养选择过程中,碳水化合物的摄入比蛋白质的摄入受到更严格的调节。当局限于营养不平衡的食物时,板球采用了营养平衡策略,无论营养失衡如何,都可以最大程度地增加营养摄入量,反映了他们杂食的习惯。当the被限制在最碳水化合物偏向的食物中(P:C=1:5)时,摄入量显着减少。当营养摄入超过需求时,这些营养素的摄入后利用效率下调,从而缓冲营养失衡对身体营养成分的影响。以碳水化合物偏向最多的食物(P:C=1:5)饲养的the子发育迟缓,生长减少。我们的数据提供了最准确的描述,并为这种杂食性昆虫的进一步营养研究奠定了基础。
    Crickets have been extensively studied in recent insect nutritional research, but it remains largely unexplored how they balance the intake of multiple nutrients. Here, we used the nutritional geometry framework to examine the behavioural and physiological regulation of dietary protein and carbohydrate in nymphs of the two-spotted cricket, Gryllus bimaculatus (Orthoptera: Gryllidae). Growth, intake, utilization efficiencies, and body composition were measured from the eighth instar nymphs that received either food pairs or single foods with differing protein and carbohydrate content. When food choices were available, crickets preferentially selected a carbohydrate-biased protein:carbohydrate (P:C) ratio of 1:1.74. During this nutrient selection, carbohydrate intake was more tightly regulated than protein intake. When confined to nutritionally imbalanced foods, crickets adopted a nutrient balancing strategy that maximized the nutrient intake regardless of the nutrient imbalance, reflecting their omnivorous feeding habit. Intake was significantly reduced when crickets were confined to the most carbohydrate-biased food (P:C = 1:5). When nutrients were ingested in excess of the requirements, the post-ingestive utilization efficiencies of these nutrients were down-regulated, thereby buffering the impacts of nutrient imbalances on body nutrient composition. Crickets reared on the most carbohydrate-biased food (P:C = 1:5) suffered delayed development and reduced growth. Our data provide the most accurate description of nutrient regulation in G. bimaculatus and lay the foundation for further nutritional research in this omnivorous insect.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    超过50%的尾矿面临灭绝的威胁,需要异地繁殖计划来支持保护工作和物种恢复。不幸的是,许多在人类护理下的sal种群会经历生殖失败,主要是由于缺少繁殖所必需的环境线索。辅助生殖技术(ART)是克服或绕过这些缺失的环境线索以促进育种的有用技术套件。外源激素用于刺激自然繁殖行为或配子表达,以进行体外受精或生物捕获,通常在昏迷状态下肌肉内施用。虽然有效,在身体较小的动物中进行肌肉注射是有风险的,导致健康和福利风险。这项研究使用虎sal(Ambystomatigrinum)作为模型物种,通过非侵入性口服生物包封途径研究了对激素给药的精子反应。雄性sal通过四种治疗(n=11雄性/治疗)随机旋转六周,其中动物接受了以下剂量的促性腺激素释放激素(GnRH):(1)仅Prime(0.0μg/g);(2)低(0.25μg/g);(3)中等(1.0μg/g);(4)高(2.0μg/g)。在解决剂量之前24小时给予所有雄性GnRH引发剂量(0.25μg/g)。外源性激素是在板球(Gryllodessigillatus)内部传递的,该板球通过镊子作为食物提供。在解析剂量后1、3、6、9、12和24小时收集精子样品并分析数量和质量。对于所有的治疗,随着时间的推移,精子浓度以偶发模式产生。与利用解决剂量的GnRH的处理相比,仅Prime处理具有较低(p<0.05)百分比的表现出正常形态的精子。总的来说,口服GnRH是在sal中诱导精子化的可行途径,产生足够数量和质量的精子,以进行体外受精和生物循环。
    More than 50% of caudates are threatened with extinction and are in need of ex-situ breeding programs to support conservation efforts and species recovery. Unfortunately, many salamander populations under human care can experience reproductive failure, primarily due to missing environmental cues necessary for breeding. Assisted reproductive technologies (ARTs) are a useful suite of techniques for overcoming or bypassing these missing environmental cues to promote breeding. Exogenous hormones are used to stimulate natural breeding behaviors or gamete expression for in-vitro fertilization or biobanking and are typically administered intramuscularly in caudates. While effective, intramuscular injection is risky to perform in smaller-bodied animals, resulting in health and welfare risks. This research investigated the spermiation response to hormone administration through a non-invasive oral bioencapsulation route using the tiger salamander (Ambystoma tigrinum) as a model species. Male salamanders were randomly rotated six weeks apart through four treatments (n = 11 males/treatment) in which animals received a resolving dose of gonadotropin-releasing hormone (GnRH) as follows: (1) Prime-Only (0.0 μg/g); (2) Low (0.25 μg/g); (3) Medium (1.0 μg/g); and (4) High (2.0 μg/g). All males were given a GnRH priming dose (0.25 μg/g) 24 hours prior to the resolving dose. Exogenous hormone was delivered inside of a cricket (Gryllodes sigillatus) that was presented as a food item by tweezers. Sperm samples were collected at 1, 3, 6, 9, 12, and 24 hours after the resolving dose and analyzed for quantity and quality. For all treatments, sperm concentration was produced in an episodic pattern over time. The Prime-Only treatment had a lower (p < 0.05) percent of sperm exhibiting normal morphology compared to treatments utilizing a resolving dose of GnRH. Overall, oral administration of GnRH is a feasible route of inducing spermiation in salamanders, yielding sperm of sufficient quantity and quality for in-vitro fertilization and biobanking efforts.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    富含昆虫的食物可以预防几种健康障碍,包括心血管疾病,通过减少炎症和改善抗氧化状态。在这项研究中,选择黄粉虫和同花草来确定对ApoE/LDLR-/-小鼠动脉粥样硬化发展的影响。给动物饲喂以AIN-93G为基础的饮食(对照),其中含有10%黄粉虫(TM)和10%燕尾草(GA),持续8周。确定了所选昆虫的营养价值和抗氧化活性。血脂谱,肝酶活性,评价模型小鼠肝脏和脂肪组织的脂肪酸组成。使用面法对整个主动脉的动脉粥样硬化病变进行定量分析,对于主动脉根部,采用横截面法。与TM幼虫相比,GA板球的抗氧化状态明显更高。结果表明,两组之间的动脉粥样硬化面积(正面法)没有显着差异。饮食GA减少主动脉根部的斑块形成;此外,与其他组相比,在200和300µm的切片中观察到显着差异。此外,与对照组相比,昆虫喂养组的肝酶ALT活性较低。该发现表明,含有可食用昆虫GA的饮食可能会阻止主动脉根部动脉粥样硬化斑块的发展。由于其高抗氧化活性。
    Foods enriched with insects can potentially prevent several health disorders, including cardiovascular diseases, by reducing inflammation and improving antioxidant status. In this study, Tenebrio molitor and Gryllus assimilis were selected to determine the effect on the development of atherosclerosis in ApoE/LDLR-/- mice. Animals were fed AIN-93G-based diets (control) with 10% Tenebrio molitor (TM) and 10% Gryllus assimilis (GA) for 8 weeks. The nutritional value as well as antioxidant activity of selected insects were determined. The lipid profile, liver enzyme activity, and the fatty acid composition of liver and adipose tissue of model mice were evaluated. Quantitative analysis of atherosclerotic lesions in the entire aorta was performed using the en face method, and for aortic roots, the cross-section method was used. The antioxidant status of the GA cricket was significantly higher compared to the TM larvae. The results showed that the area of atherosclerosis (en face method) was not significantly different between groups. Dietary GA reduced plaque formation in the aortic root; additionally, significant differences were observed in sections at 200 and 300 µm compared to other groups. Furthermore, liver enzyme ALT activity was lower in insect-fed groups compared to the control group. The finding suggests that a diet containing edible insect GA potentially prevents atherosclerotic plaque development in the aortic root, due to its high antioxidant activity.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    转座因子(TE)是可以在基因组中移动或复制的DNA序列,他们的研究在理解基因组进化和功能方面变得越来越重要。Tridactylidae家族,包括Xyariparia(侏儒痣板球),藏有各种未得到充分研究的转座因子(TE)。需要进一步研究以充分了解它们的多样性和进化特征。因此,我们使用染色体水平的组装基因组对X.riparia物种进行了全面的重复性分析.这项研究旨在全面分析丰度,分布,和基因组中转座因子(TE)的年龄。结果表明,基因组为1.67Gb,具有731.63Mb的重复序列,占II类(443.25Mb)的27%,I类的16%(268.45Mb),和1%的未知TEs(19.92Mb)。研究发现DNA转座子在基因组中占主导地位,约占总重复大小的60%,逆转录转座子和未知元素占基因组的37%和3%,分别。吉普赛超家族的成员是反转录转座子中最丰富的,占其中的63%。转座超家族(LTR/吉普赛,DNA/nMITE,DNA/hAT,和DNA/Helitron)共同构成了所有六个染色体总重复大小的近70%。该研究进一步揭示了染色体大小与重复序列之间的显着线性相关(皮尔逊相关:r=0.99,p值=0.00003)。DNA转座子和反转录转座子插入的平均年龄从25My(百万年)到5My。卫星组分析发现了13个卫星DNA家族,约占整个基因组的0.15%。此外,TEs的转录分析发现,DNA转座子比逆转录转座子更具转录活性。总的来说,这项研究表明,里帕里亚的基因组很复杂,以相当大一部分的重复元素为特征。这些发现不仅增强了我们对Tridactylidae家族中TE进化的理解,而且为未来对相关物种基因组复杂性的研究奠定了基础。
    Transposable elements (TEs) are DNA sequences that can move or replicate within a genome, and their study has become increasingly important in understanding genome evolution and function. The Tridactylidae family, including Xya riparia (pygmy mole cricket), harbors a variety of transposable elements (TEs) that have been insufficiently investigated. Further research is required to fully understand their diversity and evolutionary characteristics. Hence, we conducted a comprehensive repeatome analysis of X. riparia species using the chromosome-level assembled genome. The study aimed to comprehensively analyze the abundance, distribution, and age of transposable elements (TEs) in the genome. The results indicated that the genome was 1.67 Gb, with 731.63 Mb of repetitive sequences, comprising 27% of Class II (443.25 Mb), 16% of Class I (268.45 Mb), and 1% of unknown TEs (19.92 Mb). The study found that DNA transposons dominate the genome, accounting for approximately 60% of the total repeat size, with retrotransposons and unknown elements accounting for 37% and 3% of the genome, respectively. The members of the Gypsy superfamily were the most abundant amongst retrotransposons, accounting for 63% of them. The transposable superfamilies (LTR/Gypsy, DNA/nMITE, DNA/hAT, and DNA/Helitron) collectively constituted almost 70% of the total repeat size of all six chromosomes. The study further unveiled a significant linear correlation (Pearson correlation: r = 0.99, p-value = 0.00003) between the size of the chromosomes and the repetitive sequences. The average age of DNA transposon and retrotransposon insertions ranges from 25 My (million years) to 5 My. The satellitome analysis discovered 13 satellite DNA families that comprise about 0.15% of the entire genome. In addition, the transcriptional analysis of TEs found that DNA transposons were more transcriptionally active than retrotransposons. Overall, the study suggests that the genome of X. riparia is complex, characterized by a substantial portion of repetitive elements. These findings not only enhance our understanding of TE evolution within the Tridactylidae family but also provide a foundation for future investigations into the genomic intricacies of related species.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

公众号