Granular structure

  • 文章类型: Journal Article
    随着计算机科学和基于实验室的工程在日常生活中的广泛应用,数据的维度和规模正在迅速增长。由于模糊性的可用性,后来的不确定性,冗余,无关,和噪音,这在构建有效的学习模型方面提出了担忧。模糊粗糙集及其扩展已通过各种数据约简方法应用于处理这些问题。然而,构建一个能够同时应对所有这些问题的模型总是一项具有挑战性的任务。迄今为止,没有一项研究同时解决了所有这些问题。本文研究了一种基于直觉模糊(IF)和粗糙集概念的方法,通过提出一种有趣的数据约简技术来同时避免这些障碍。为了完成这项任务,首先,提出了一种新的IF相似关系。其次,在这种相似关系的基础上建立了IF粗糙集模型。第三,通过使用建立的相似关系和下近似,给出了IF颗粒结构。接下来,数学定理用于验证所提出的概念。然后,IF颗粒的重要性程度用于多余的尺寸消除。Further,讨论了重要度保留的降维。因此,可以同时执行大量高维数据集的实例和特征选择,以消除维度和大小上的冗余和不相关性,其中模糊性和后来的不确定性分别用粗糙集和IF集处理,而噪声是用中频颗粒结构解决的。此后,对基准数据集进行了全面的实验,以证明同时选择特征和数据点的方法的有效性。最后,我们提出的方法学辅助框架进行了讨论,以提高抗病毒肽的IC50的回归性能。
    The dimension and size of data is growing rapidly with the extensive applications of computer science and lab based engineering in daily life. Due to availability of vagueness, later uncertainty, redundancy, irrelevancy, and noise, which imposes concerns in building effective learning models. Fuzzy rough set and its extensions have been applied to deal with these issues by various data reduction approaches. However, construction of a model that can cope with all these issues simultaneously is always a challenging task. None of the studies till date has addressed all these issues simultaneously. This paper investigates a method based on the notions of intuitionistic fuzzy (IF) and rough sets to avoid these obstacles simultaneously by putting forward an interesting data reduction technique. To accomplish this task, firstly, a novel IF similarity relation is addressed. Secondly, we establish an IF rough set model on the basis of this similarity relation. Thirdly, an IF granular structure is presented by using the established similarity relation and the lower approximation. Next, the mathematical theorems are used to validate the proposed notions. Then, the importance-degree of the IF granules is employed for redundant size elimination. Further, significance-degree-preserved dimensionality reduction is discussed. Hence, simultaneous instance and feature selection for large volume of high-dimensional datasets can be performed to eliminate redundancy and irrelevancy in both dimension and size, where vagueness and later uncertainty are handled with rough and IF sets respectively, whilst noise is tackled with IF granular structure. Thereafter, a comprehensive experiment is carried out over the benchmark datasets to demonstrate the effectiveness of simultaneous feature and data point selection methods. Finally, our proposed methodology aided framework is discussed to enhance the regression performance for IC50 of Antiviral Peptides.
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  • 文章类型: Journal Article
    在模糊粗糙集理论的概念中建立模糊粗糙熵,该方法已有效且高效地应用于特征选择,以处理实值数据集中的不确定性。Further,通过将信息熵与模糊粗糙集相结合来度量特征的重要性,提出了模糊粗糙互信息。然而,到目前为止,没有一种方法可以处理噪音,由于判断和识别,同时存在不确定性和模糊性,随着混合值条件特征数量的增加,导致学习算法的整体性能下降。在目前的研究中,这些问题通过提出一种新的直觉模糊(IF)辅助互信息概念以及IF粒度结构来解决。最初,引入了混合中频相似关系。基于这种关系,引入了IF颗粒结构。然后,如果建立了粗糙的条件和联合熵。Further,讨论了基于这些概念的互信息。接下来,数学定理证明了给定概念的有效性。此后,通过使用这种互信息来计算特征子集的重要性,并建议相应的特征选择来删除无关和冗余的特征。当前方法有效地处理标称和混合数据(包括标称和类别变量)中的噪声和后续不确定性。此外,综合实验性能的评估在实际值的基准数据集,以证明该技术的实际验证和有效性。最后,所提出的方法的应用被证明可以改善对磷脂变性阳性分子的预测。根据我们提出的具有灵敏度的方法,RF(H2O)产生迄今为止最有效的结果,准确度,特异性,MCC,AUC为86.7%,90.1%,93.0%,分别为0.808和0.922。
    Fuzzy rough entropy established in the notion of fuzzy rough set theory, which has been effectively and efficiently applied for feature selection to handle the uncertainty in real-valued datasets. Further, Fuzzy rough mutual information has been presented by integrating information entropy with fuzzy rough set to measure the importance of features. However, none of the methods till date can handle noise, uncertainty and vagueness simultaneously due to both judgement and identification, which lead to degrade the overall performances of the learning algorithms with the increment in the number of mixed valued conditional features. In the current study, these issues are tackled by presenting a novel intuitionistic fuzzy (IF) assisted mutual information concept along with IF granular structure. Initially, a hybrid IF similarity relation is introduced. Based on this relation, an IF granular structure is introduced. Then, IF rough conditional and joint entropies are established. Further, mutual information based on these concepts are discussed. Next, mathematical theorems are proved to demonstrate the validity of the given notions. Thereafter, significance of the features subset is computed by using this mutual information, and corresponding feature selection is suggested to delete the irrelevant and redundant features. The current approach effectively handles noise and subsequent uncertainty in both nominal and mixed data (including both nominal and category variables). Moreover, comprehensive experimental performances are evaluated on real-valued benchmark datasets to demonstrate the practical validation and effectiveness of the addressed technique. Finally, an application of the proposed method is exhibited to improve the prediction of phospholipidosis positive molecules. RF(h2o) produces the most effective results till date based on our proposed methodology with sensitivity, accuracy, specificity, MCC, and AUC of 86.7%, 90.1%, 93.0% , 0.808, and 0.922 respectively.
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  • 文章类型: Journal Article
    颗粒尺寸是影响淀粉加工性能的关键参数。对两种粒径不同的淀粉(藜麦淀粉和玉米淀粉)进行长达22小时的超声处理。两种淀粉在受超声处理影响的结构和物理化学方面均显示出明显不同的趋势。对于小颗粒淀粉(体积加权平均粒径为1.79μm),短期超声处理导致肿胀能力增加。随着治疗时间的增加,其理化性质受支链淀粉外链降解的影响。X射线衍射结果表明,长期处理后,相对结晶度降低,峰面积发生变化。另一方面,对于大颗粒淀粉(体积加权平均粒径为18.3μm),看到了直链淀粉浸出和表面损伤之间的平衡。讨论了超声改性对不同分子结构和颗粒结构淀粉的影响。提出了超声效应的可能机制。
    Granule size is a critical parameter affecting starch processing properties. Ultrasound treatments of up to 22 h were applied on two starches differing in granule size (quinoa starch and maize starch). The two starches showed significantly different trends in both structural and physicochemical aspects affected by the ultrasound treatments. For the small granule starch (volume-weighted mean particle size of 1.79 μm), short-term ultrasonication caused an increase of swelling power. As the treatment time increased, the physicochemical properties were influenced by the degradation of amylopectin external chains. The X-ray diffraction results showed a decrease of relative crystallinity and changes of peak areas with long-term treatment. On the other hand, a balance between amylose leaching and surface damages was seen for the large granule starch (volume-weighted mean particle size of 18.3 μm). The effect of ultrasound modification on starches with different molecular and granular structures was discussed. A possible mechanism of the ultrasound effect was proposed.
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  • 文章类型: Journal Article
    溅射FePt(BN,Re,C)电影,这里的氮化硼(BN),与参考样品FePt(BN,Ag,C).本质上,这些薄膜显示了高各向异性场(Hk)和垂直磁晶各向异性(Ku),尽管参考样本显示出较高的值(Hk=69.5kOe,Ku=1.74×107erg/cm3)比FePt(BN,Re,C)胶卷(Hk=66.9kOe,Ku=1.46×107erg/cm3)。然而,各向异性常数(K2/K1)比率的微小差异在切换场的角度依赖性方面呈现接近的趋势。本质上,参考样品的平面外矫顽力为32kOe,也高于FePt(BN,Re,C)胶片(Hc=27kOe),两种薄膜均呈现较低的剩磁(Mr(平行)/Mr(垂直)=0.08~0.12),也就是说,垂直磁各向异性的指数。两种薄膜的垂直磁化强度较高是由于高度(001)纹理化的FePt薄膜,这也由(001)/(002)X射线衍射峰的4.1°/3.0°的紧密摇摆宽度证明,分别,和足够高的有序度。测量参考样品具有比FePt(BN,Re,C)(S=0.63)。因此,Ag偏析体显示出较强的促进FePt膜有序化的能力;然而,FePt(BN,Re,C)薄膜在没有Ag掺杂的情况下仍具有相当的磁性。从表面和元素组成分析,在FePt晶格中发现的金属Re原子导致过渡金属Fe(3d电子)和重金属(Re,Pt)(5d电子)与我们进行了高磁晶各向异性(Ku)。以上是低阶FePt(BN,Re,C)胶片仍具有足够高的Ku和平面外Hc。关于微观结构,参考样品和FePt(BN,Re,C)呈粒状结构和柱状晶粒,平均晶粒尺寸和分布分别为6.60nm(12.5%)和11.2nm(15.9%)。晶界的平均宽度和柱状晶粒高度的纵横比为2.05nm,1.00nm,2.35nm,和1.70nm,分别。
    A sputtered FePt(BN, Re, C) film, here boron nitride (BN), was compared to a reference sample FePt(BN, Ag, C). Intrinsically, these films illustrate a high anisotropy field (Hk) and perpendicular magnetocrystalline anisotropy (Ku),although the reference sample shows a higher value (Hk = 69.5 kOe, Ku = 1.74 × 107 erg/cm3) than the FePt(BN, Re, C) film (Hk = 66.9 kOe, Ku = 1.46 × 107 erg/cm3). However, the small difference in the anisotropy constant (K2/K1) ratio presents a close tendency in the angular dependence of the switching field. Extrinsically, the out-of-plane coercivity for the reference sample is 32 kOe, which is also higher than the FePt(BN, Re, C) film (Hc = 27 kOe), and both films present lower remanence (Mr(parallel)/Mr(perpendicular) = 0.08~0.12), that is, the index for perpendicular magnetic anisotropy. The higher perpendicular magnetization for both films was due to highly (001) textured FePt films, which was also evidenced by the tight rocking width of 4.1°/3.0° for (001)/(002) X-ray diffraction peaks, respectively, and high-enough ordering degree. The reference sample was measured to have a higher ordering degree (S = 0.84) than FePt(BN, Re, C) (S = 0.63). As a result, the Ag segregant shows stronger ability to promote the ordering of the FePt film; however, the FePt(BN, Re, C) film still has comparable magnetic properties without Ag doping. From the surface and elemental composition analysis, the metallic Re atoms found in the FePt lattice result in a strong spin-orbital coupling between transition metal Fe (3d electron) and heavy metals (Re, Pt) (5d electron) and we conducted high magnetocrystalline anisotropy (Ku). Above is the explanation that the lower-ordered FePt(BN, Re, C) film still has high-enough Ku and out-of-plane Hc. Regarding the microstructure, both the reference sample and FePt(BN, Re, C) show granular structure and columnar grains, and the respective average grain size and distributions are 6.60 nm (12.5%) and 11.2 nm (15.9%). The average widths of the grain boundaries and the aspect ratio of the columnar grain height are 2.05 nm, 1.00 nm, 2.35 nm, and 1.70 nm, respectively.
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  • 文章类型: Journal Article
    卷心菜芯(CC)被视为蔬菜的废物部分,尽管可食用并含有各种营养和功能化合物。我们研究了粒径<1mm的CC粉末作为一种新的食品材料的性质。CC粉末比叶源粉末更能抵抗结构变形,特别是颗粒尺寸≥0.3mm的CC粉末。研究CC粉末在3D打印食品中的应用,我们调查了“纳塔泥”的影响,“用罗望子树胶(NPTG)制成的分解的那塔可可,在用CC粉末制成的糊状物上。NPTG促进了使用CC粉末制成的糊状物的稳定粘合,其使用注射器成功地挤出以形成具有粒状结构的棒。因此,CC粉末具有独特的质地/结构特性,可用于下一代食品。
    Cabbage core (CC) is regarded as a waste part of the vegetable, despite being edible and containing various nutritional and functional compounds. We investigated the properties of CC powder with particle sizes < 1 mm as a new food material. CC powder was more resistant to structural deformation than leaf-derived powder, particularly CC powder with particles ≥ 0.3 mm in size. To examine the application of CC powder in 3D printed foods, we investigated the effects of \"nata puree,\" a disintegrated nata de coco made with tamarind seed gum (NPTG), on paste made with CC powder. NPTG promoted stable binding of paste made using CC powder, which was successfully extruded using a syringe to form a bar with a granular structure. Thus, CC powder possesses unique textural/structural properties for its application in next-generation foods.
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  • 文章类型: Journal Article
    TAP是一种通用的mRNA输出受体,在真核生物中高度保守。线虫秀丽隐杆线虫有另一种类似TAP的蛋白,NXF-2,但对其功能知之甚少。在这项研究中,我们表明NXF-2在生殖细胞中特异性表达,并形成与P颗粒不同的新型颗粒结构,并且NXF-2颗粒锚定在雌雄同体性腺有丝分裂区域的核外周。相比之下,NXF-2颗粒在减数分裂区域的整个细胞质内释放,女性化基因tra-2开始起作用。XPO-1(输出受体CRM1的直系同源物)的抑制和NXF-2的核输出信号的突变均导致NXF-2颗粒从核外周释放,表明NXF-2颗粒的锚定取决于XPO-1的功能。此外,NXF-2的抑制导致携带tra-23UTR的报告mRNA的大量核积累。这些结果表明,与XPO-1一起,NXF-2将tra-2mRNA输出并锚定到核外围,以避免早熟翻译,直到生殖细胞到达减数分裂区域,从而有助于调节tra-2mRNA的表达。
    TAP is a general mRNA export receptor and is highly conserved among eukaryotes. The nematode Caenorhabditis elegans has another TAP-like protein, NXF-2, but little is known about its function. In this study, we show that NXF-2 is specifically expressed in germ cells and forms a novel granular structure that is different from that of P granules and that NXF-2 granules are anchored to the nuclear periphery in the mitotic region of the hermaphrodite gonad. In contrast, NXF-2 granules are released within the whole cytoplasm in the meiotic region, where the feminization gene tra-2 starts to function. Both inhibition of XPO-1 (an ortholog of the export receptor CRM1) and mutation of the nuclear export signal of NXF-2 caused the release of NXF-2 granules from the nuclear periphery, indicating that anchoring of NXF-2 granules depends on XPO-1 function. Moreover, inhibition of NXF-2 resulted in a substantial nuclear accumulation of the reporter mRNA carrying the tra-2 3\'UTR. These results suggest that, together with XPO-1, NXF-2 exports and anchors tra-2 mRNA to the nuclear periphery to avoid precocious translation until the germ cells reach the meiotic region, thereby contributing to the regulation of tra-2 mRNA expression.
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  • 文章类型: Journal Article
    通过多种方法研究了受壬基琥珀酸酐(NSA)取代影响的藜麦淀粉颗粒结构,包括散射,光谱学,和微观技术。改性对淀粉颗粒的形貌影响不大。NSA取代主要在无定形薄片和无定形生长环中发现。NSA改性增加了无定形薄片的厚度。颗粒中有序结构的均匀性得到改善,可能是因为NSA修饰减少了半结晶生长环中的缺陷量。与其他化学修饰如酰化相比,琥珀酰化在修饰淀粉层状结构方面更有效。提出了NSA改性藜麦淀粉的可能反应模式,其中NSA修饰可能遵循无定形生长环的顺序,小块之间的无定形矩阵,半结晶生长环中的无定形和结晶薄片。本研究在超分子水平上为琥珀酰化诱导淀粉颗粒的结构变化提供了新的见解。
    Quinoa starch granular structure as affected by nonenyl succinic anhydride (NSA) substitution was investigated by multiple approaches, including scattering, spectroscopic, and microscopic techniques. The modification had little impact on the morphology of starch granules. The NSA substitution was found mainly in the amorphous lamellae and amorphous growth rings. The NSA modification increased the thickness of the amorphous lamellae. The homogeneity of the ordered structure in the granules was improved, probably because the NSA modification reduced the amount of defects in the semi-crystalline growth ring. Compared to other chemical modifications such as acylation, succinylation was more effective in modifying the starch lamellar structure. A possible reaction pattern of NSA modification on quinoa starch is proposed, in which the NSA modification may follow the sequence of amorphous growth rings, the amorphous matrices among blocklets, amorphous and crystalline lamellae in semi-crystalline growth rings. This study provides new insights on the structural changes of starch granules induced by succinylation on the supramolecular level.
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  • 文章类型: Journal Article
    评估了湿热处理的马铃薯淀粉(HPS)中的直链淀粉-硬脂酸钠(SS)复合物(2、5和8%)的理化性质。根据DSC热谱图,成功地形成了具有高热稳定性的直链淀粉-SS复合物,I型的熔融温度(T峰)≥112°C,II型络合物的熔融温度≥125°C。添加2%SS导致复合物的单个吸热峰,而5%和8%导致形成具有更高焓(ΔH)值的I型和II型络合物。XRD曲线证实复合物成功形成。糊化温度从天然的66°C增加到具有5%SS的HPS145复合淀粉的91°C。此外,膨胀力可以大大降低,并保留了粒状结构。此外,在(HPS)上与SS的包合络合成功地提高了烹饪稳定性。
    Amylose‑sodium stearate (SS) complexes (2, 5 and 8%) in heat-moisture treated potato starch (HPS) were evaluated for their physicochemical properties. Based on the DSC thermograms, the amylose - SS complexes were successfully formed with high thermal stability, indicated by a melt temperature (Tpeak) of ≥ 112 °C for type I and ≥125 °C for type II complexes. Addition of 2% SS resulted in a single endothermal peak of the complexes, while 5 and 8% led to the formation of type I and II complexes with much higher enthalpy (ΔH) values. The XRD curve confirmed that the complexes were successfully formed. The pasting temperature increased from 66 °C for native to 91 °C for HPS145 complexed starch with 5% SS. Furthermore, the swelling power could be largely decreased, and the granular structure preserved. In addition, the inclusion complexation with SS on (HPS) succesfully improved the cook stabiliy.
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  • 文章类型: Journal Article
    Aerobic sludge granulation was rapidly obtained in the erlenmeyer bottle and sequencing batch reactor (SBR) using piggery wastewater. Aerobic granulation occurred on day 3 and granules with mean diameter of 0.2mm and SVI30 of 20.3mL/g formed in SBR on day 18. High concentrations of Ca and Fe in the raw piggery wastewater and operating mode accelerated aerobic granulation, even though the seed sludge was from a municipal wastewater treatment plant (WWTP). Alpha diversity analysis revealed Operational Taxonomic Units, Shannon, ACE and Chao 1 indexes in aerobic granules were 2013, 5.51, 4665.5 and 3734.5, which were obviously lower compared to seed sludge. The percentages of major microbial communities, such as Proteobacteria, Bacteroidetes and Firmicutes were obviously higher in aerobic granules than seed sludge. Chloroflexi, Planctomycetes, Actinobacteria, TM7 and Acidobacteria showed much higher abundances in the inoculum. The main reasons might be the characteristics of raw piggery wastewater and granule structure.
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  • 文章类型: Journal Article
    This work aimed to characterize the molecular structure and functional properties of starches isolated from wild Dioscorea yams grown at the Amazons, using conventional and up-to-date methodologies. Among the high purity starches isolated (≥99%), the chain lengths were similar, whereas variations in gelatinization profile were observed. Starches have shown varied-shaped granules with monomodal distribution, and B-type crystallinity. Variations in amylose contents found by three analyses were hypothesized being related to intermediate material. Linear chain lengths were similar, and their amylopectins showed a dense, spherical conformation and similar molecular characteristics. The average molar mass and the radius of gyration of the chromatograms of the yam amylopectin, M¯W and R¯G were ranging between 174×10(6) g mol(-1) and 237×10(6) g mol(-1), and 201 nm and 233 nm, respectively. The white yams starches were more sensible to enzymes than the other two. All starches have shown a wide range of functional and nutritional properties.
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