Glycogen Synthase

糖原合成酶
  • 文章类型: Journal Article
    糖原代谢是生物体的重要生物学过程。在秀丽隐杆线虫中,研究了6-PPD醌(6-PPDQ)对糖原积累的影响及其潜在机制。暴露于6-PPDQ(1和10μg/L)会增加糖原的积累。同时,暴露于6-PPDQ(1和10μg/L)会增加编码糖原合酶的gsy-1的表达,并降低编码糖原磷酸化酶的pygl-1的表达。在6-PPDQ暴露的动物中,gsy-1的RNAi抑制糖原含量和糖原积累,pygl-1的RNAi增强糖原含量和糖原积累。gsy-1的RNAi增加pygl-1表达,6-PPDQ暴露后,pygl-1的RNAi增加了gsy-1的表达。在6-PPDQ暴露线虫中,daf-16和aak-2的表达降低,糖原积累被daf-16和aak-2的RNAi抑制,表明daf-16和aak-2表达的改变并不介导糖原积累。此外,在gsy-1(RNAi)动物中观察到6-PPDQ对运动和育苗大小的毒性的抗性,在pygl-1(RNAi)动物中发现了对6-PPDQ毒性的易感性。因此,通过暴露于线虫中的6-PPDQ可以增强糖原的积累。此外,gsy-1和pygl-1表达的改变控制了糖原积累的这种增强,从而介导了6-PPDQ毒性的诱导。
    Glycogen metabolism is an important biological process for organisms. In Caenorhabditis elegans, effect of 6-PPD quinone (6-PPDQ) on glycogen accumulation and underlying mechanism were examined. Exposure to 6-PPDQ (1 and 10 μg/L) increased glycogen accumulation. Meanwhile, exposure to 6-PPDQ (1 and 10 μg/L) increased expression of gsy-1 encoding glycogen synthase and decreased expression of pygl-1 encoding glycogen phosphorylase. In 6-PPDQ exposed animals, glycogen content and glycogen accumulation were inhibited by RNAi of gsy-1 and enhanced by RNAi of pygl-1. RNAi of gsy-1 increased pygl-1 expression, and RNAi of pygl-1 increased gsy-1 expression after 6-PPDQ exposure. In 6-PPDQ exposed nematodes, daf-16 and aak-2 expressions were decreased and glycogen accumulation was suppressed by RNAi of daf-16 and aak-2, suggesting alteration in daf-16 and aak-2 expressions did not mediate glycogen accumulation. Moreover, resistance to 6-PPDQ toxicity on locomotion and brood size was observed in gsy-1(RNAi) animals, and susceptibility to 6-PPDQ toxicity was found in pygl-1(RNAi) animals. Therefore, glycogen accumulation could be enhanced by exposure to 6-PPDQ in nematodes. In addition, alteration in expressions of gsy-1 and pygl-1 governing this enhancement in glycogen accumulation mediated induction of 6-PPDQ toxicity.
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  • 文章类型: Journal Article
    糖原是葡萄糖在不同组织如肝脏和骨骼肌中的能量储存形式。糖原如何影响脂肪组织功能仍未完全了解。冷暴露会升高棕色脂肪组织(BAT)和腹股沟白色脂肪组织(iWAT)中编码糖原合酶1的Gys1的表达。使用小鼠模型分析Gysl的体内功能,其中Gysl在脂肪组织中特异性缺失。在正常的食物条件下,Gys1缺失对体重和葡萄糖代谢几乎没有变化。在长时间冷暴露或用b3-肾上腺素能受体激动剂CL-316,243治疗后,Gys1的缺失消除了iWAT中UCP1和其他产热相关基因的上调。在脂肪来源的基质细胞(SVF)中CL-316,243对UCP1的刺激也因Gys1缺失而减少。Gys1缺失降低了脂肪组织中的基础糖原含量和CL-316,243刺激的糖原积累。在Gys1缺失小鼠中,高脂饮食诱导的肥胖和胰岛素抵抗加重。CL-316,243治疗后的体重损失也因Gys1的损失而消除。总之,我们的研究结果强调了糖原合成在米色脂肪组织适应性产热中的关键作用及其对饮食诱导的小鼠肥胖的影响.
    Glycogen is a form of energy storage for glucose in different tissues such as liver and skeletal muscle. It remains incompletely understood how glycogen impacts on adipose tissue functionality. Cold exposure elevated the expression of Gys1 that encodes glycogen synthase 1 in brown adipose tissue (BAT) and inguinal white adipose tissue (iWAT). The in vivo function of Gys1 was analyzed using a mouse model in which Gys1 was deleted specifically in adipose tissues. Under normal chow conditions, Gys1 deletion caused little changes to body weight and glucose metabolism. Deletion of Gys1 abrogated upregulation of UCP1 and other thermogenesis-related genes in iWAT upon prolonged cold exposure or treatment with β3-adrenergic receptor agonist CL-316,243. Stimulation of UCP1 by CL-316,243 in adipose-derived stromal cells (stromal vascular fractions, SVFs) was also reduced by Gys1 deletion. Both the basal glycogen content and CL-316,243-stimulated glycogen accumulation in adipose tissues were reduced by Gys1 deletion. High-fat diet-induced obesity and insulin resistance were aggravated in Gys1-deleted mice. The loss of body weight upon CL-316,243 treatment was also abrogated by the loss of Gys1. In conclusion, our results underscore the pivotal role of glycogen synthesis in adaptive thermogenesis in beige adipose tissue and its impact on diet-induced obesity in mice.NEW & NOTEWORTHY Glycogen is one of major types of fuel reserve in the body and its classical function is to maintain blood glucose level. This study uncovers that glycogen synthesis is required for beige fat tissue to generate heat upon cold exposure. Such a function of glycogen is linked to development of high-fat diet-induced obesity, thus extending our understanding about the physiological functions of glycogen.
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  • 文章类型: Journal Article
    他汀类药物治疗可能会增加糖尿病的风险;关于他汀类药物如何影响葡萄糖调节和血糖控制的数据不足,他汀类药物对与碳水化合物代谢相关的肝酶的影响尚未得到充分研究。因此,我们的目的是比较他汀类药物衍生物的作用,普伐他汀,和瑞舒伐他汀,关于实验性糖尿病大鼠模型中碳水化合物代谢的研究。使用雌性Wistar白化病大鼠,并通过腹膜内注射链脲佐菌素诱导糖尿病。此后,通过口服管饲法向糖尿病大鼠施用10和20mgkg-1天-1剂量的普伐他汀和瑞舒伐他汀。实验结束时,身体肿块,空腹血糖水平,血清胰岛素,胰岛素抵抗(HOMA-IR),肝糖原,并测定与碳水化合物代谢相关的肝酶。两种剂量的普伐他汀都显着增加了糖尿病大鼠的体重,然而,瑞舒伐他汀,特别是在20mgkg-1day-1的剂量下,体重显着降低。普伐他汀,特别是在20mgkg-1day-1的剂量下,导致肝糖原合酶和葡萄糖6-磷酸脱氢酶水平显着增加,但糖原磷酸化酶水平显着降低,乳酸脱氢酶,和葡萄糖-6-磷酸酶。因此,普伐他汀部分改善了糖尿病引起的肝酶的不良变化,特别是在20mgkg-1day-1的剂量下,降低了空腹血糖水平并增加了肝糖原含量。然而,瑞舒伐他汀,特别是在20mgkg-1day-1的剂量下,显着降低了肝糖原合成酶和丙酮酸激酶的水平,但是增加了糖尿病大鼠的糖原磷酸化酶水平。瑞舒伐他汀,20mgkg-1天-1剂量,导致糖尿病大鼠的体重和肝糖原含量显着下降。可以得出结论普伐他汀,特别是在20mgkg-1day-1的剂量下,通过调节碳水化合物代谢更有效地改善糖尿病的负面影响。
    Statin treatment may increase the risk of diabetes; there is insufficient data on how statins affect glucose regulation and glycemic control and the effects of statins on liver enzymes related to carbohydrate metabolism have not been fully studied. Therefore, we aimed to compare the effects of the statin derivatives, pravastatin, and rosuvastatin, on carbohydrate metabolism in an experimental diabetic rat model. Female Wistar albino rats were used and diabetes was induced by intraperitoneal injection of streptozotocin. Thereafter, 10 and 20 mg kg-1 day-1 doses of both pravastatin and rosuvastatin were administered by oral gavage to the diabetic rats for 8 weeks. At the end of the experiment, body masses, the levels of fasting blood glucose, serum insulin, insulin resistance (HOMA-IR), liver glycogen, and liver enzymes related to carbohydrate metabolism were measured. Both doses of pravastatin significantly in creased the body mass in diabetic rats, however, rosuvastatin, especially at the dose of 20 mg kg-1 day-1 reduced the body mass signi ficantly. Pravastatin, especially at a dose of 20 mg kg-1 day-1, caused significant increases in liver glycogen synthase and glucose 6-phosphate dehydrogenase levels but significant decreases in the levels of glycogen phosphorylase, lactate dehydrogenase, and glucose-6-phosphatase. Hence, pravastatin partially ameliorated the adverse changes in liver enzymes caused by diabetes and, especially at the dose of 20 mg kg-1 day-1, reduced the fasting blood glucose level and increased the liver glycogen content. However, rosuvastatin, especially at the dose of 20 mg kg-1 day-1, significantly reduced the liver glycogen synthase and pyruvate kinase levels, but increased the glycogen phosphorylase level in diabetic rats. Rosuvastatin, 20 mg kg-1 day-1 dose, caused significant decreases in the body mass and the liver glycogen content of diabetic rats. It can be concluded that pravastatin, especially at the dose of 20 mg kg-1 day-1 is more effective in ameliorating the negative effects of diabetes by modulating carbohydrate metabolism.
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  • 文章类型: Journal Article
    乙酰羟酸合酶(AHAS)是生物合成支链氨基酸的关键酶之一。它也是筛选除草剂和抗生素的有效目标。在这项研究中,我们提出了一种制备大肠杆菌AHASI全酶(EcAHASI)的方法,具有出色的稳定性,这为我们重新研究蛋白质的体外催化特性提供了坚实的基础。结果表明,以这种方式合成的EcAHASI在丙酮酸和2-酮丁酸(2-KB)作为双底物的催化方面表现出与枯草芽孢杆菌乙酰乳酸合酶相似的功能,产生四种2-羟基-3-酮酸,包括(S)-2-乙酰乳酸,(S)-2-乙酰-2-羟基丁酸酯,(S)-2-丙酰乳酸,和(S)-2-丙酰基-2-羟基丁酸酯。反应的定量表明两种底物几乎完全消耗,和化合物(S)-2-乙酰-2-羟基丁酸酯以四种主要产物中最高的产率形成。此外,该蛋白质还缩合两个2-KB分子以提供(S)-2-丙酰基-2-羟基丁酸酯。进一步的探索表明,EcAHASI将丙酮酸盐/2-KB和亚硝基苯连接成两种芳基异羟胺酸N-羟基-N-苯基乙酰胺和N-羟基-N-苯基丙酰胺。这些发现增强了我们对EcAHASI催化特性的理解。此外,该酶作为催化剂在C-N键构建中的应用显示出广阔的潜力。
    Acetohydroxyacid synthase (AHAS) is one of the key enzymes of the biosynthesis of branched-chain amino acids, it is also an effective target for the screening of herbicides and antibiotics. In this study we present a method for preparing Escherichia coli AHAS I holoenzyme (EcAHAS I) with exceptional stability, which provides a solid ground for us to re-investigate the in vitro catalytic properties of the protein. The results show EcAHAS I synthesized in this way exhibits similar function to Bacillus subtilis acetolactate synthase in its catalysis with pyruvate and 2-ketobutyrate (2-KB) as dual-substrate, producing four 2-hydroxy-3-ketoacids including (S)-2-acetolactate, (S)-2-aceto-2-hydroxybutyrate, (S)-2-propionyllactate, and (S)-2-propionyl-2-hydroxybutyrate. Quantification of the reaction indicates that the two substrates almost totally consume, and compound (S)-2-aceto-2- hydroxybutyrate forms in the highest yield among the four major products. Moreover, the protein also condenses two molecules of 2-KB to furnish (S)-2-propionyl-2-hydroxybutyrate. Further exploration manifests that EcAHAS I ligates pyruvate/2-KB and nitrosobenzene to generate two arylhydroxamic acids N-hydroxy-N-phenylacetamide and N-hydroxy-N-phenyl- propionamide. These findings enhance our comprehension of the catalytic characteristics of EcAHAS I. Furthermore, the application of this enzyme as a catalyst in construction of C-N bonds displays promising potential.
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  • 文章类型: Journal Article
    目的:作者试图了解73名老年男性和女性肌肉代谢的性别差异。
    方法:身体成分,VO2最大值,通过3小时高胰岛素-正常血糖钳夹和股外侧肌活检测量胰岛素敏感性(M)。
    结果:女性体重较低,VO2最大值,和无脂肪的质量比男人。男人有较低的M,肌肉糖原合酶(GS)活性的变化较低(胰岛素减去基础),AKT蛋白表达变化低于女性。M与GS活性的变化(基础胰岛素)和AKT蛋白表达的变化有关。通过6个月的体重减轻或3倍/周的有氧运动训练测试了性别差异(n=60)。干预后减去干预前GS活动的变化(基础胰岛素)(取决于)(分数,独立,总)在减肥组中,男性高于女性,而在有氧运动组中,女性的GS分数活动要高于男性。在所有参与者中,GS分数和独立活性与AKT表达和糖原含量相关。
    结论:胰岛素敏感性的性别差异可以在细胞肌肉水平解释,改善老年人骨骼肌胰岛素的作用,可能有必要根据个人的性别推荐不同的行为策略。
    The authors sought to understand sex differences in muscle metabolism in 73 older men and women.
    Body composition, VO2max, and insulin sensitivity (M) by 3-hour hyperinsulinemic-euglycemic clamp with vastus lateralis muscle biopsies were measured.
    Women had lower body weight, VO2max, and fat-free mass than men. Men had lower M, lower change (insulin minus basal) in muscle glycogen synthase (GS) activity, and lower change in AKT protein expression than women. M was associated with the change (insulin-basal) in GS activity and the change in AKT protein expression. Sex differences (n = 60) were tested with 6-month weight loss or 3×/week aerobic exercise training. The postintervention minus preintervention change (insulin-basal) (∆∆) in GS activity (fractional, independent, total) was higher in men than women in the weight loss group and ∆∆ in GS fractional activity was higher in women than men in the aerobic exercise group. In all participants, ∆∆ in GS fractional and independent activities was related to ∆∆ in AKT expression and glycogen content.
    Sex differences in insulin sensitivity may be explained at the cellular muscle level, and to improve skeletal muscle insulin action in older adults, it may be necessary to recommend different behavioral strategies depending on the individual\'s sex.
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  • 文章类型: Journal Article
    葡萄糖平衡的长期破坏可导致代谢紊乱。肾脏在调节血糖水平中起重要作用。然而,当暴露于慢性高血糖时,肾脏处理葡萄糖代谢的能力可能受损,导致糖原的积累.早期的研究表明,在糖尿病的肾脏中,糖原形式的葡萄糖储存可能显着增加。足细胞在维持过滤屏障的完整性方面起着至关重要的作用。在糖尿病中,暴露于升高的葡萄糖水平可以导致足细胞的显着代谢和结构变化,导致肾脏损害和糖尿病肾病的发展。足细胞中糖原的积累不是一个公认的现象。然而,最近的一项研究表明,足细胞中存在糖原颗粒。这篇综述深入研究了肾脏背景下高血糖和糖原代谢之间的复杂联系。特别强调足细胞。糖原的异常储存有可能不利地影响足细胞的功能并扰乱其结构完整性。这篇综述提供了对细胞信号传导途径的改变的全面分析,这些改变可能导致足细胞糖原过度产生。
    Prolonged disruption in the balance of glucose can result in metabolic disorders. The kidneys play a significant role in regulating blood glucose levels. However, when exposed to chronic hyperglycemia, the kidneys\' ability to handle glucose metabolism may be impaired, leading to an accumulation of glycogen. Earlier studies have shown that there can be a significant increase in glucose storage in the form of glycogen in the kidneys in diabetes. Podocytes play a crucial role in maintaining the integrity of filtration barrier. In diabetes, exposure to elevated glucose levels can lead to significant metabolic and structural changes in podocytes, contributing to kidney damage and the development of diabetic kidney disease. The accumulation of glycogen in podocytes is not a well-established phenomenon. However, a recent study has demonstrated the presence of glycogen granules in podocytes. This review delves into the intricate connections between hyperglycemia and glycogen metabolism within the context of the kidney, with special emphasis on podocytes. The aberrant storage of glycogen has the potential to detrimentally impact podocyte functionality and perturb their structural integrity. This review provides a comprehensive analysis of the alterations in cellular signaling pathways that may potentially lead to glycogen overproduction in podocytes.
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  • 文章类型: Journal Article
    通过β-酮脂酰-ACP合酶III将乙酰辅酶A与丙二酰-酰基载体蛋白(ACP)缩合(KASIII,FabH)和丙二酰-ACP脱羧酶对丙二酰-ACP的脱羧是在大肠杆菌中启动细菌脂肪酸合成(FAS)的两种途径。除了这两条路线,我们报道了恶臭假单胞菌F1β-酮脂酰-ACP合酶I(FabB),除了在脂肪酸伸长中起关键作用之外,还在体内启动FAS。我们报告说,虽然两个P.putidaF1fabH基因(PpfabH1和PpfabH2)都编码功能性KASIII酶,两者都不是增长所必需的。PpFabH1是类似于大肠杆菌FabH的典型KASIII,而PpFabH2催化丙二酰-ACP与短链和中链长度的酰基-CoA的缩合。由于这两种KASIII酶对于P.putidaF1中的FAS不是必需的,因此我们寻找P.putida起始酶并意外地发现它是FabB,不依赖氧的不饱和脂肪酸途径的延伸酶。P.putidaFabB使丙二酰-ACP脱羧并将乙酰基-ACP产物与丙二酰-ACP缩合以引发FAS。这些数据显示P.putidaFabB,与范例大肠杆菌FabB不同,可以催化FAS中的引发反应。
    The condensation of acetyl-CoA with malonyl-acyl carrier protein (ACP) by β-ketoacyl-ACP synthase III (KAS III, FabH) and decarboxylation of malonyl-ACP by malonyl-ACP decarboxylase are the two pathways that initiate bacterial fatty acid synthesis (FAS) in Escherichia coli. In addition to these two routes, we report that Pseudomonas putida F1 β-ketoacyl-ACP synthase I (FabB), in addition to playing a key role in fatty acid elongation, also initiates FAS in vivo. We report that although two P. putida F1 fabH genes (PpfabH1 and PpfabH2) both encode functional KAS III enzymes, neither is essential for growth. PpFabH1 is a canonical KAS III similar to E. coli FabH whereas PpFabH2 catalyzes condensation of malonyl-ACP with short- and medium-chain length acyl-CoAs. Since these two KAS III enzymes are not essential for FAS in P. putida F1, we sought the P. putida initiation enzyme and unexpectedly found that it was FabB, the elongation enzyme of the oxygen-independent unsaturated fatty acid pathway. P. putida FabB decarboxylates malonyl-ACP and condenses the acetyl-ACP product with malonyl-ACP for initiation of FAS. These data show that P. putida FabB, unlike the paradigm E. coli FabB, can catalyze the initiation reaction in FAS.
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  • 文章类型: Journal Article
    为了回应一顿饭,胰岛素驱动肝糖原合成,以帮助调节全身葡萄糖稳态。雷帕霉素复合物1(mTORC1)的机制靶标是公认的胰岛素靶标,有助于餐后控制肝脏脂质代谢,自噬,和蛋白质合成。然而,其在肝脏葡萄糖代谢中的作用尚不清楚。这里,我们使用了代谢组学,同位素示踪,和小鼠遗传学来定义肝脏mTORC1信号传导在餐后糖酵解中间体和糖原沉积控制中的作用。我们表明mTORC1是糖原合酶活性和糖原生成所必需的。机械上,肝mTORC1活性促进Ppp1r3b的摄食依赖性诱导,编码对糖原合成酶活性重要的磷酸酶的基因,其多态性与人类糖尿病有关。缺乏mTORC1信号传导的肝脏中Ppp1r3b的再表达增强糖原合酶活性并恢复餐后糖原含量。Ppp1r3b的mTORC1依赖性转录控制由FOXO1促进,FOXO1是一种特征良好的转录调节因子,参与肝脏对营养摄入的反应。总的来说,我们确定了mTORC1信号传导在Ppp1r3b的转录调节和随后诱导餐后肝糖原合成中的作用。
    In response to a meal, insulin drives hepatic glycogen synthesis to help regulate systemic glucose homeostasis. The mechanistic target of rapamycin complex 1 (mTORC1) is a well-established insulin target and contributes to the postprandial control of liver lipid metabolism, autophagy, and protein synthesis. However, its role in hepatic glucose metabolism is less understood. Here, we used metabolomics, isotope tracing, and mouse genetics to define a role for liver mTORC1 signaling in the control of postprandial glycolytic intermediates and glycogen deposition. We show that mTORC1 is required for glycogen synthase activity and glycogenesis. Mechanistically, hepatic mTORC1 activity promotes the feeding-dependent induction of Ppp1r3b, a gene encoding a phosphatase important for glycogen synthase activity whose polymorphisms are linked to human diabetes. Reexpression of Ppp1r3b in livers lacking mTORC1 signaling enhances glycogen synthase activity and restores postprandial glycogen content. mTORC1-dependent transcriptional control of Ppp1r3b is facilitated by FOXO1, a well characterized transcriptional regulator involved in the hepatic response to nutrient intake. Collectively, we identify a role for mTORC1 signaling in the transcriptional regulation of Ppp1r3b and the subsequent induction of postprandial hepatic glycogen synthesis.
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  • 文章类型: Journal Article
    糖原合成酶1(GYS1),肌肉糖原合成中的限速酶,在能量稳态中起着核心作用,并已被提议作为多种糖原贮积疾病的治疗靶标。尽管经过了几十年的调查,没有已知的强效,这种酶的选择性小分子抑制剂。这里,我们报道了MZ-101的临床前特征,MZ-101是一种小分子,可在体外和体内有效抑制GYS1而不抑制GYS2,GYS2是合成肝糖原所必需的相关同工型。用MZ-101耗竭的肌糖原的慢性治疗在小鼠中耐受性良好。庞贝氏症,由酸性α葡萄糖苷酶(GAA)突变引起的糖原贮积病,导致糖原的病理积累和随后的自噬溶酶体异常,代谢失调,肌肉萎缩.使用重组GAA的酶替代疗法(ERT)是唯一批准的针对庞贝氏病的治疗方法,但它需要频繁的输液,并且功效受到骨骼肌分布欠佳的限制。在庞贝病的小鼠模型中,单独长期口服MZ-101可减少骨骼肌中糖原的积累,效果与ERT相当.此外,MZ-101联合ERT治疗具有累加效应,可使肌糖原浓度正常化.生物化学,代谢组学,和肌肉组织的转录组学分析表明,MZ-101单独或与ERT联合使用可降低糖原浓度,纠正了该小鼠模型中的细胞病理学。这些数据表明,抑制GYS1的底物减少疗法可能是一种有希望的治疗庞贝氏病和其他糖原贮积病的方法。
    Glycogen synthase 1 (GYS1), the rate-limiting enzyme in muscle glycogen synthesis, plays a central role in energy homeostasis and has been proposed as a therapeutic target in multiple glycogen storage diseases. Despite decades of investigation, there are no known potent, selective small-molecule inhibitors of this enzyme. Here, we report the preclinical characterization of MZ-101, a small molecule that potently inhibits GYS1 in vitro and in vivo without inhibiting GYS2, a related isoform essential for synthesizing liver glycogen. Chronic treatment with MZ-101 depleted muscle glycogen and was well tolerated in mice. Pompe disease, a glycogen storage disease caused by mutations in acid α glucosidase (GAA), results in pathological accumulation of glycogen and consequent autophagolysosomal abnormalities, metabolic dysregulation, and muscle atrophy. Enzyme replacement therapy (ERT) with recombinant GAA is the only approved treatment for Pompe disease, but it requires frequent infusions, and efficacy is limited by suboptimal skeletal muscle distribution. In a mouse model of Pompe disease, chronic oral administration of MZ-101 alone reduced glycogen buildup in skeletal muscle with comparable efficacy to ERT. In addition, treatment with MZ-101 in combination with ERT had an additive effect and could normalize muscle glycogen concentrations. Biochemical, metabolomic, and transcriptomic analyses of muscle tissue demonstrated that lowering of glycogen concentrations with MZ-101, alone or in combination with ERT, corrected the cellular pathology in this mouse model. These data suggest that substrate reduction therapy with GYS1 inhibition may be a promising therapeutic approach for Pompe disease and other glycogen storage diseases.
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  • 文章类型: Journal Article
    生物钟系统调控的关键基因的鉴定和功能分析将提供对生物钟破坏损害生物体健康的潜在机制的全面理解。初始阶段涉及生物信息学分析,从来自野生型小鼠肝脏组织的三个RNA-seq数据集(GSE184303,GSE114400和GSE199061)中汲取见解,涵盖了一天中的六个不同的时间点。不出所料,鉴定了536个表现出节律表达模式的重叠基因。通过在两个代表性时间点(昼夜节律时间,CT:CT2和CT14)在全局Bmal1基因敲除小鼠(Bmal1-/-)中,肝细胞特异性Bmal1基因敲除小鼠(L-Bmal1-/-),和他们相应的对照组,80个可能由BMAL1调节的基因(称为BMAL1调节基因,BRGs)被识别。这些基因在糖脂代谢中显著富集,免疫反应,和肿瘤发生途径。选择八个BRGs(Nr1d1,Cry1,Gys2,Homer2,Serpina6,Slc2a2,Nmrk1和Upp2)以验证它们在24小时内在对照和L-Bmal1-/-小鼠肝脏中的表达模式。与对照小鼠肝脏中观察到的明显节律模式相反。此外,这些选择的BRGs的表达水平显着降低,不包括Cry1,也在L-Bmal1-/-小鼠肝脏中观察到。染色质免疫沉淀(ChIP)-seq(GSE13505和GSE39860)和JASPAR分析验证了BMAL1与这些基因的启动子和内含子区域的节律结合。此外,条件的发展,从基础脂肪变性到非酒精性脂肪性肝病,和最终的恶性肿瘤,显示人肝脏中Bmal1转录本的持续逐渐下降。将上述BRG与源自人类肝癌数据集的DEGs组合,将Gys2和Upp2鉴定为桥接昼夜节律系统和肝细胞癌(HCC)的潜在节点基因。此外,CCK8和伤口愈合实验表明,人GYS2和UPP2蛋白的过表达抑制了HepG2细胞的增殖和迁移,伴随着肿瘤抑制蛋白p53的表达升高。总之,这项研究系统地鉴定了小鼠肝脏中的节律基因,和可能受BMAL1调控的昼夜节律基因的子集。两个昼夜节律基因,Gys2和Upp2已被提出并验证为推进HCC预防和治疗的潜在候选人。
    Identification and functional analysis of key genes regulated by the circadian clock system will provide a comprehensive understanding of the underlying mechanisms through which circadian clock disruption impairs the health of living organisms. The initial phase involved bioinformatics analysis, drawing insights from three RNA-seq datasets (GSE184303, GSE114400, and GSE199061) derived from wild-type mouse liver tissues, which encompassed six distinct time points across a day. As expected, 536 overlapping genes exhibiting rhythmic expression patterns were identified. By intersecting these genes with differentially expressed genes (DEGs) originating from liver RNA-seq data at two representative time points (circadian time, CT: CT2 and CT14) in global Bmal1 knockout mice (Bmal1-/-), hepatocyte-specific Bmal1 knockout mice (L-Bmal1-/-), and their corresponding control groups, 80 genes potentially regulated by BMAL1 (referred to as BMAL1-regulated genes, BRGs) were identified. These genes were significantly enriched in glycolipid metabolism, immune response, and tumorigenesis pathways. Eight BRGs (Nr1d1, Cry1, Gys2, Homer2, Serpina6, Slc2a2, Nmrk1, and Upp2) were selected to validate their expression patterns in both control and L-Bmal1-/- mice livers over 24 h. Real-time quantitative polymerase chain reaction results demonstrated a comprehensive loss of rhythmic expression patterns in the eight selected BRGs in L-Bmal1-/- mice, in contrast to the discernible rhythmic patterns observed in the livers of control mice. Additionally, significant reductions in the expression levels of these selected BRGs, excluding Cry1, were also observed in L-Bmal1-/- mice livers. Chromatin immunoprecipitation (ChIP)-seq (GSE13505 and GSE39860) and JASPAR analyses validated the rhythmic binding of BMAL1 to the promoter and intron regions of these genes. Moreover, the progression of conditions, from basic steatosis to non-alcoholic fatty liver disease, and eventual malignancy, demonstrated a continuous gradual decline in Bmal1 transcripts in the human liver. Combining the aforementioned BRGs with DEGs derived from human liver cancer datasets identified Gys2 and Upp2 as potential node genes bridging the circadian clock system and hepatocellular carcinoma (HCC). In addition, CCK8 and wound healing assays demonstrated that the overexpression of human GYS2 and UPP2 proteins inhibited the proliferation and migration of HepG2 cells, accompanied by elevated expression of p53, a tumor suppressor protein. In summary, this study systematically identified rhythmic genes in the mouse liver, and a subset of circadian genes potentially regulated by BMAL1. Two circadian genes, Gys2 and Upp2, have been proposed and validated as potential candidates for advancing the prevention and treatment of HCC.
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