Germline testing

种系试验
  • 文章类型: Journal Article
    胰腺癌,随着发病率的惊人上升,预计到2040年将成为第二致命的实体瘤,这凸显了对改进诊断和治疗策略的迫切需要。尽管医学上取得了进步,胰腺癌的5年生存率保持在14%左右,转移时进一步下降。这篇综述探讨了早期检测生物标志物的前景,个性化治疗,和疾病监测。基于基因突变的胰腺癌分子分型,基因表达,蛋白质标记指导治疗决策,有可能改善结果。目前正在进行大量研究不同策略的临床试验。靶向治疗,其中反对CLAUDIN18.2和抑制Claudin18.1的人表现出了希望。下一代测序(NGS)已成为胰腺肿瘤全面基因组分析的强大工具,揭示了驱动癌症进展的独特遗传改变。这使肿瘤学家能够针对特定的分子异常定制治疗方法。然而,挑战依然存在,包括对生物标志物指导疗法的认识和吸收有限。继续研究胰腺癌的分子机制对于开发更有效的治疗方法和提高患者生存率至关重要。
    Pancreatic cancer, with its alarming rising incidence, is predicted to become the second deadliest type of solid tumor by 2040, highlighting the urgent need for improved diagnostic and treatment strategies. Despite medical advancements, the five-year survival rate for pancreatic cancer remains about 14%, dropping further when metastasized. This review explores the promise of biomarkers for early detection, personalized treatment, and disease monitoring. Molecular classification of pancreatic cancer into subtypes based on genetic mutations, gene expression, and protein markers guides treatment decisions, potentially improving outcomes. A plethora of clinical trials investigating different strategies are currently ongoing. Targeted therapies, among which those against CLAUDIN 18.2 and inhibitors of Claudin 18.1, have shown promise. Next-generation sequencing (NGS) has emerged as a powerful tool for the comprehensive genomic analysis of pancreatic tumors, revealing unique genetic alterations that drive cancer progression. This allows oncologists to tailor therapies to target specific molecular abnormalities. However, challenges remain, including limited awareness and uptake of biomarker-guided therapies. Continued research into the molecular mechanisms of pancreatic cancer is essential for developing more effective treatments and improving patient survival rates.
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  • 文章类型: Journal Article
    药物遗传学研究影响药物反应的基因序列,实现个性化用药。这种方法减少了药物引起的不良反应,提高了临床疗效,使其成为个性化医疗的关键考虑因素。许多指导方针,由全球财团和科学组织绘制,编码基因型驱动的管理超过120种活性物质。正如科学界承认基因型定制疗法相对于传统的不可知药物管理的好处,推动其在意大利医疗保健系统中实施的势头正在增强。这种演变受到几个因素的影响,包括改善对患者基因型的获取,测序成本降低,大规模遗传研究的发展,直接面向消费者的药物遗传学测试越来越受欢迎,以及药物遗传学指南的不断完善。由于EMA(欧洲药品管理局)和AIFA(意大利药品管理局)在药物说明书上提供基因型信息,而没有明确的基因检测临床适应症,在意大利,药物遗传学测试的监管是一个紧迫的问题。在这份手稿中,我们回顾了如何克服在意大利医疗保健系统的临床实践中实施药物遗传学检测的障碍.我们特别强调的是种系测试,鉴于缺乏明确的国家指令,与体细胞药物遗传学相反。
    Pharmacogenetics investigates sequence of genes that affect drug response, enabling personalized medication. This approach reduces drug-induced adverse reactions and improves clinical effectiveness, making it a crucial consideration for personalized medical care. Numerous guidelines, drawn by global consortia and scientific organizations, codify genotype-driven administration for over 120 active substances. As the scientific community acknowledges the benefits of genotype-tailored therapy over traditionally agnostic drug administration, the push for its implementation into Italian healthcare system is gaining momentum. This evolution is influenced by several factors, including the improved access to patient genotypes, the sequencing costs decrease, the growing of large-scale genetic studies, the rising popularity of direct-to-consumer pharmacogenetic tests, and the continuous improvement of pharmacogenetic guidelines. Since EMA (European Medicines Agency) and AIFA (Italian Medicines Agency) provide genotype information on drug leaflet without clear and explicit clinical indications for gene testing, the regulation of pharmacogenetic testing is a pressing matter in Italy. In this manuscript, we have reviewed how to overcome the obstacles in implementing pharmacogenetic testing in the clinical practice of the Italian healthcare system. Our particular emphasis has been on germline testing, given the absence of well-defined national directives in contrast to somatic pharmacogenetics.
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  • 文章类型: Journal Article
    目的:具有BRCA突变的转移性前列腺癌(mPCa)患者受益于靶向治疗(例如,奥拉帕利)。此外,受影响患者的家庭成员患遗传性癌症的风险增加,并从早期发现和预防中受益。国际指南建议在mPCa中进行基因检测,然而,mPCa患者检测和血液相关家庭成员级联检测的资金价值尚未评估.在这种情况下,我们评估了mPCa患者种系BRCA测试的成本效益,然后对突变携带者的一级亲属(FDR)进行级联测试。
    方法:我们使用两种情况进行了种系BRCA测试的成本效用分析:1)仅测试mPCa患者;2)测试mPCa患者和测试阳性患者的一级亲属(FDRs)。使用生命周期时间范围构建了半马尔可夫多健康状态转移模型。这些分析是从澳大利亚付款人的角度进行的。使用概率分析来表征决策不确定性。
    结果:与未测试相比,mPCa中的BRCA测试与3,731澳元的增量成本和0.014质量调整寿命年(QALYs)的收益相关,导致增量成本效益比(ICER)为265,942澳元/QALY。将测试扩展到变异阳性患者的FDR导致ICER为AU$16,392/QALY。在独立mPCa分析中,愿意支付$75,000/QALY的成本效益概率为0%,在级联测试分析中为100%。
    结论:BRCA检测在mPCa患者中作为独立策略进行时可能不具成本效益,但在纳入突变携带者FDRs级联检测后显示出显著的资金价值。
    OBJECTIVE: Metastatic prostate cancer (mPCa) patients with BRCA mutations benefit from targeted treatments (e.g., olaparib). Additionally, family members of affected patients have increased risk of hereditary cancers and benefit from early detection and prevention. International guidelines recommend genetic testing in mPCa, however, the value for money of testing mPCa patients and cascade testing of blood-related family members has not been assessed. In this context we evaluated the cost-effectiveness of germline BRCA testing in mPCa patients followed by cascade testing of first-degree relatives (FDRs) of mutation carriers.
    METHODS: We conducted a cost-utility analysis of germline BRCA testing using two scenarios: 1) testing mPCa patients only; 2) testing mPCa patients and first-degree relatives (FDRs) of those who test positive. A semi-Markov multi-health-state transition model was constructed using a lifetime time horizon. The analyses were performed from an Australian payer perspective. Decision uncertainty was characterized using probabilistic analyses.
    RESULTS: Compared with no testing, BRCA testing in mPCa was associated with an incremental cost of AU$3,731 and a gain of 0.014 quality-adjusted life years (QALYs), resulting in an incremental cost-effectiveness ratio (ICER) of AU$265,942/QALY. Extending testing to FDRs of variant positive patients resulted in an ICER of AU$16,392/QALY. Probability of cost-effectiveness at a willingness-to-pay of AU$75,000/QALY was 0% in the standalone mPCa analysis and 100% in the cascade testing analysis.
    CONCLUSIONS: BRCA testing when performed as a standalone strategy in patients with mPCa may not be cost-effective but demonstrates significant value for money after the inclusion of cascade testing of FDRs of mutation carriers.
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  • 文章类型: Journal Article
    前列腺癌(PCa)是高度遗传性的,非洲血统的男性面临最大的风险和相关的致命性。基因组数据中缺乏代表性意味着种系测试指南排除了非洲男性。确定结构变异(SVs)是人类疾病和前列腺肿瘤发生的主要贡献者,他们的作用在家庭和治疗性测试中被低估。利用临床方法匹配的非洲(n=113)和欧洲(n=57)深度测序的PCa资源,我们使用最适合的致病性预测工作流程查询了42,966个高质量的种系SV.我们确定了15个潜在的致病性SVs,分别代表12.4%的非洲和7.0%的欧洲患者。其中72%和86%符合种系检测标准的护理建议,分别。值得注意的非洲特异性功能丧失基因候选包括DNA损伤修复MLH1和BARD1以及肿瘤抑制因子FOXP1、WASF1和RB1。仅代表广大非洲侨民的一小部分,这项研究提出了关于千碱基至巨型碱基罕见变异体对PCa致病性和非洲相关差异的贡献的考虑。
    Prostate cancer (PCa) is highly heritable, with men of African ancestry at greatest risk and associated lethality. Lack of representation in genomic data means germline testing guidelines exclude for African men. Established that structural variations (SVs) are major contributors to human disease and prostate tumourigenesis, their role is under-appreciated in familial and therapeutic testing. Utilising a clinico-methodologically matched African (n = 113) versus European (n = 57) deep-sequenced PCa resource, we interrogated 42,966 high-quality germline SVs using a best-fit pathogenicity prediction workflow. We identified 15 potentially pathogenic SVs representing 12.4% African and 7.0% European patients, of which 72% and 86% met germline testing standard-of-care recommendations, respectively. Notable African-specific loss-of-function gene candidates include DNA damage repair MLH1 and BARD1 and tumour suppressors FOXP1, WASF1 and RB1. Representing only a fraction of the vast African diaspora, this study raises considerations with respect to the contribution of kilo-to-mega-base rare variants to PCa pathogenicity and African associated disparity.
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  • 文章类型: Journal Article
    目的:生殖系检测在儿科癌症中的应用带来了机遇和挑战。理解家庭观点,经验,和偏好将优化整合到日常护理。
    方法:遵循PRISMA指南,我们搜索了四个数据库,用于探索观点的研究,经验,以及父母/照顾者和/或患者对癌症儿童的种系测试的偏好。提取了定性和定量数据,有组织的,并按研究问题和主题进行总结。
    结果:我们确定了2286篇独特文章,其中包括24个。对测试的兴趣和吸收很高。家庭的动机是利他主义和对继承/因果关系信息的渴望。测试障碍包括心理问题,如果在诊断或高风险癌症环境中提供测试方法的时间和隐私/歧视。测试经验突出了挑战,但也产生了积极影响,结果提供了心理救济和为主动决策提供信息。时间偏好各不相同,然而,让时间适应新的诊断是一个共同的主题。大多数人希望获得尽可能多的种系测序相关结果。
    结论:研究结果强调了将种系分析整合到儿科癌症护理中的重要性,并为面临挑战的家庭提供灵活性和支持。在可能的情况下,应在适合每个家庭情况的时间提供同意,并获得符合他们需求和偏好的信息。
    CRD42023444890。
    OBJECTIVE: Germline testing in pediatric cancer presents opportunities and challenges. Understanding family perspectives, experiences, and preferences will optimize integration into routine care.
    METHODS: Following Preferred Reporting Items for Systematic Reviews and Meta-Analyses guidelines, we searched 4 databases for studies exploring perspectives, experiences, and preferences of parents/caregivers and/or patients regarding germline testing of children with cancer. Qualitative and quantitative data were extracted, organized, and summarized by research question and themes.
    RESULTS: We identified 2286 unique articles, of which 24 were included. Interest in and uptake of testing was high. Families were motivated by altruism and a desire for inheritance/causation information. Testing barriers included psychological concerns, timing of the testing approach if offered at diagnosis or in a high-risk cancer setting and privacy/discrimination. Testing experiences highlighted challenges yet also positive impacts, with results providing psychological relief and informing proactive decision making. Timing preferences varied; however, allowing time to adjust to a new diagnosis was a common theme. Most wanted to receive as many germline sequencing-related results as possible.
    CONCLUSIONS: Findings underscore the importance of integrating germline analyses into pediatric cancer care with flexibility and support for families facing challenges. Where possible, consent should be provided at a time that suits each family\'s situation with access to information aligning with their needs and preferences.
    UNASSIGNED: CRD42023444890.
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  • 文章类型: Journal Article
    背景:传统上对疑似遗传性癌症综合征的患者进行生殖系基因检测,以加强癌症监测和/或预防策略,但越来越多地用于治疗适应症。
    方法:我们对在我们中心接受种系基因检测的患者进行了回顾性研究,以确定可操作致病性种系变异(PGV)的患病率及其临床应用。
    结果:从2000年到2022年,1154名癌症患者接受了种系测试,大多数(945/1154)使用多基因面板进行了测试。41111名(35.6%)患者患有PGV,334名(81%)具有临床可行性。BRCA1/2占可操作突变的62.3%,其次是错配修复(18%),和其他同源重组修复(HRR)基因(19.7%)。一百五十二名种系阳性患者患有晚期癌症,79例接受了种系定向治疗(聚ADP核糖聚合酶抑制剂=75;免疫疗法=4).免疫治疗和多聚ADP核糖聚合酶的中位持续时间为20.5个月(范围5-40个月)和8个月(范围1-76个月),分别。在接受铂类化疗的BRCA/HRR突变携带者中,新辅助治疗组的病理完全缓解率为53%(n=17例乳腺癌),晚期治疗组的客观缓解率>80%(n=71).
    结论:接受测试的癌症患者中有三分之一携带PGV,约80%具有临床可行性。在现实世界中,四分之三的种系阳性晚期癌症患者接受了种系指导的治疗,强调种系测试在指导癌症治疗方面的实用性。
    BACKGROUND: Germline genetic testing is traditionally carried out in patients suspected with hereditary cancer syndrome for enhanced cancer surveillance and/or preventive strategies, but is increasingly carried out for therapeutic indications.
    METHODS: We conducted a retrospective review of patients who underwent germline genetic testing at our centre to determine the prevalence of actionable pathogenic germline variants (PGV) and their clinical utility.
    RESULTS: From 2000 to 2022, 1154 cancer patients underwent germline testing, with the majority (945/1154) tested with multi-gene panels. Four hundred and eleven (35.6%) patients harboured a PGV and 334 (81%) were clinically actionable. BRCA1/2 accounted for 62.3% of actionable mutations, followed by mismatch repair (18%), and other homologous recombination repair (HRR) genes (19.7%). One hundred and fifty-two germline-positive patients have advanced cancers, and 79 received germline-directed therapies (poly ADP ribose polymerase inhibitors = 75; immunotherapy = 4). Median duration of immunotherapy and poly ADP ribose polymerase were 20.5 months (range 5-40 months) and 8 months (range 1-76 months), respectively. Among BRCA/HRR mutation carriers who received platinum-based chemotherapy, pathological complete response rate in the neoadjuvant setting was 53% (n = 17 breast cancers) and objective response rate was >80% in the advanced setting (n = 71).
    CONCLUSIONS: One-third of cancer patients tested carried a PGV and ∼80% were clinically actionable. Three-quarters of germline-positive advanced cancer patients received germline-directed therapies in the real world, underscoring the practical utility of germline testing to guide cancer therapeutics.
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  • 文章类型: Case Reports
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  • 文章类型: Journal Article
    背景:精准医学在临床实践中的应用意味着对可操作的基因组改变进行全面评估,以简化治疗决策。通过下一代测序(NGS)对肿瘤进行全面的基因组分析代表了一个巨大的机会,但也存在一些挑战。在2023年圣拉斐尔撤退期间,我们旨在为NGS在尿路上皮癌(UC)中的最佳应用提供专家建议.
    方法:采用改进的德尔菲法,由来自欧洲和美国中心的12名UC专家组成的小组参与,包括肿瘤学家,泌尿科医师,病理学家,翻译科学家。初步调查,在会议之前进行的,向专家组发表了15份声明。当每个陈述达成≥70%的一致意见时,就定义了共识。会议期间讨论了未达到共识门槛的声明。
    结果:涉及患者选择的15项声明中有9项,癌症特征,和NGS检测的类型,在调查中达成共识。其余六项陈述解决了NGS使用的最佳时机,NGS检测的理想肿瘤生物样本来源,会议期间讨论了评估某些基因组发现的种系性质的后续需求,导致会议结束时达成一致意见。
    结论:这项建立共识的努力解决了关于在UC中使用NGS的多个未解决的问题。专家的意见是赞成更广泛地使用NGS。在建议/指南可能受到限制的情况下,这些见解可能有助于临床医生提供知情咨询,并提高精确和个性化治疗的标准.
    BACKGROUND: The application of precision medicine in clinical practice implies a thorough evaluation of actionable genomic alterations to streamline therapeutic decision making. Comprehensive genomic profiling of tumor via next-generation sequencing (NGS) represents a great opportunity but also several challenges. During the 2023 San Raffaele Retreat, we aimed to provide expert recommendations for the optimal use of NGS in urothelial carcinoma (UC).
    METHODS: A modified Delphi method was utilized, involving a panel of 12 experts in UC from European and United States centers, including oncologists, urologists, pathologists, and translational scientists. An initial survey, conducted before the meeting, delivered 15 statements to the panel. A consensus was defined when ≥70% agreement was reached for each statement. Statements not meeting the consensus threshold were discussed during the meeting.
    RESULTS: Nine of the 15 statements covering patient selection, cancer characteristics, and type of NGS assay, achieved a consensus during the survey. The remaining six statements addressing the optimal timing of NGS use, the ideal source of tumor biospecimen for NGS testing, and the subsequent need to evaluate the germline nature of certain genomic findings were discussed during the meeting, leading to unanimous agreement at the end of the conference.
    CONCLUSIONS: This consensus-building effort addressed multiple unanswered questions regarding the use of NGS in UC. The opinion of experts was in favor of broader use of NGS. In a setting where recommendations/guidelines may be limited, these insights may aid clinicians to provide informed counselling and raise the bar of precision and personalized therapy.
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  • 文章类型: Journal Article
    基因检测是转移性前列腺癌治疗中不可或缺的一部分,在某种程度上,因为结果会对这种疾病的后续管理产生深远的影响。现在有几种食品和药物管理局(FDA)批准的治疗方法可用于前列腺癌和某些遗传异常的患者-最值得注意的是,DNA损伤修复(DDR)途径中的突变,如错配修复(MMR)和同源重组修复(HRR)。在对当前文献的回顾中,我们讨论体细胞和种系测试的适应症,具有特殊临床相关性的遗传变化,相关的治疗选择,以及支持其使用的临床数据。我们还重点介绍了该领域正在进行的部分试验和未来方向。
    Genetic testing is an integral part of the workup of metastatic prostate cancer, in part, because the results can have a profound impact on the subsequent management of this disease. There are now several Food & Drug Administration (FDA) approved therapeutics available for patients with prostate cancer and certain genetic abnormalities - most notably, mutations in DNA damage repair (DDR) pathways such mismatch repair (MMR) and homologous recombination repair (HRR). In this review of the current literature, we discuss the indications for somatic and germline testing, the genetic changes of particular clinical relevance, the associated therapeutic options, and the clinical data supporting their use. We also highlight select trials-in-progress and future directions for the field.
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  • 文章类型: Journal Article
    目的:确定新诊断卵巢癌患者转诊和完成种系基因检测的预测因素,关注地理社会剥夺,肿瘤学家级别的实践,以及诊断和完成测试之间的时间。
    方法:从2014年至2019年北卡罗来纳大学卫生系统新诊断卵巢癌患者的病历中提取临床和社会人口统计学数据。与遗传咨询转诊相关的因素,完成种系测试,使用多变量回归确定诊断和检测结果之间的时间.
    结果:307/459(67%)名患者接受遗传咨询,285/459(62%)完成检测。转诊的患者完成测试的预测概率为0.83(95%CI:0.77-0.88),而未转诊的患者为0.27(95%CI:0.18-0.35)。ZIP代码水平社会剥夺指数(SDI)第25百分位的患者的预测转诊概率为0.75(95%CI:0.69-0.82),而SDI第75百分位的患者的预测转诊概率为0.67(0.60-0.74)。转诊因肿瘤学家而异,肿瘤学家的预测概率范围为0.47(95%CI:0.32-0.62)至0.93(95%CI:0.85-1.00)。诊断和测试结果之间的中位时间为137天(IQR:55-248天)。该间隔减少了预测的每年24.46天(95%CI:37.75-11.16)。
    结论:我们报告了相对较高的种系检测和从诊断到结果的及时趋势,随着肿瘤学家和患者因素的变化。自动转诊,远程遗传咨询和样本收集,降低了自付成本,应该探索教育干预措施。
    To identify predictors of referral and completion of germline genetic testing among newly diagnosed ovarian cancer patients, with a focus on geographic social deprivation, oncologist-level practices, and time between diagnosis and completion of testing.
    Clinical and sociodemographic data were abstracted from medical records of patients newly diagnosed with ovarian cancer between 2014 and 2019 in the University of North Carolina Health System. Factors associated with referral for genetic counseling, completion of germline testing, and time between diagnosis and test results were identified using multivariable regression.
    307/459 (67%) patients were referred for genetic counseling and 285/459 (62%) completed testing. The predicted probability of test completion was 0.83 (95% CI: 0.77-0.88) for patients with a referral compared to 0.27 (95% CI: 0.18-0.35) for patients without a referral. The predicted probability of referral was 0.75 (95% CI: 0.69-0.82) for patients at the 25th percentile of ZIP code-level Social Deprivation Index (SDI) and 0.67 (0.60-0.74) for patients at the 75th percentile of SDI. Referral varied by oncologist, with predicted probabilities ranging from 0.47 (95% CI: 0.32-0.62) to 0.93 (95% CI: 0.85-1.00) across oncologists. The median time between diagnosis and test results was 137 days (IQR: 55-248 days). This interval decreased by a predicted 24.46 days per year (95% CI: 37.75-11.16).
    We report relatively high germline testing and a promising trend in time from diagnosis to results, with variation by oncologist and patient factors. Automated referral, remote genetic counseling and sample collection, reduced out-of-pocket costs, and educational interventions should be explored.
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