Functional aspects of cell biology

细胞生物学的功能方面
  • 文章类型: Journal Article
    杆状裂变酵母通过两极和隔膜的细胞壁扩张生长,由必需的葡聚糖合酶合成。Bgs1在胞质分裂时合成初级隔膜的线性β(1,3)葡聚糖。线性β(1,3)葡聚糖也存在于壁极中,提示Bgs1在生长极性中的额外作用。我们的研究揭示了Bgs1和Tea1-Tea4之间的重要合作,但没有其他极性因素,控制生长极性。同时缺乏Bgs1功能和Tea1-Tea4会导致生长极性完全丧失,其他葡聚糖合酶的传播,和球形细胞的形成,表明这种缺陷是由于缺乏线性β(1,3)葡聚糖。此外,线性β(1,3)葡聚糖缺失诱导肌动蛋白斑块离域和固醇扩散,在没有Tea1-Tea4的情况下,它们最终导致生长极性损失。这表明Bgs1在胞质分裂和极化生长过程中控制肌动蛋白结构的功能具有很强的相似性。总的来说,我们的发现揭示了细胞壁β(1,3)葡聚糖调节极化生长,像神经元细胞中相当的细胞外基质。
    Rod-shaped fission yeast grows through cell wall expansion at poles and septum, synthesized by essential glucan synthases. Bgs1 synthesizes the linear β(1,3)glucan of primary septum at cytokinesis. Linear β(1,3)glucan is also present in the wall poles, suggesting additional Bgs1 roles in growth polarity. Our study reveals an essential collaboration between Bgs1 and Tea1-Tea4, but not other polarity factors, in controlling growth polarity. Simultaneous absence of Bgs1 function and Tea1-Tea4 causes complete loss of growth polarity, spread of other glucan synthases, and spherical cell formation, indicating this defect is specifically due to linear β(1,3)glucan absence. Furthermore, linear β(1,3)glucan absence induces actin patches delocalization and sterols spread, which are ultimately responsible for the growth polarity loss without Tea1-Tea4. This suggests strong similarities in Bgs1 functions controlling actin structures during cytokinesis and polarized growth. Collectively, our findings unveil that cell wall β(1,3)glucan regulates polarized growth, like the equivalent extracellular matrix in neuronal cells.
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  • 文章类型: Journal Article
    超过80%的胰腺导管腺癌(PDAC)患者患有恶病质/消瘦综合征。恶病质与生存率降低有关,生活质量下降,和较高的转移率。这里,我们证明,脂肪减少是PDAC-exosome诱导的恶病质的最早特征。来自正常和癌症衍生的外泌体的外泌体成分的microRNA测序显示miR-16-5p的富集,miR-21-5p,miR-29a-3p,携带PDAC的小鼠和PDAC患者的血清外泌体中的miR-125b-5p。Further,miR-16-5p和miR-29a-3p通过降低Erlin2和Cmpk1表达来抑制脂肪生成,从而下调C/EBPβ和PPARγ。协同,miR-29a-3p通过抑制MCT1表达增加ATGL表达促进脂解。此外,缺乏miR-16-5p和miR-29a-3p的PDAC-外泌体不能诱导脂肪损失。因此,miR-16-5p和miR-29a-3p外泌体miR是PDAC诱导的脂肪损失所必需的。因此,我们揭示了PDAC通过外泌体miRs诱导脂肪萎缩。这些知识可能为PDAC引起的恶病质提供新的诊断和治疗策略。
    Over 80% of the patients with pancreatic ductal adenocarcinoma (PDAC) have cachexia/wasting syndrome. Cachexia is associated with reduced survival, decreased quality of life, and higher metastasis rates. Here, we demonstrate that fat loss is the earliest feature of PDAC-exosome-induced cachexia. MicroRNA sequencing of exosomal components from normal and cancer-derived exosomes revealed enrichment of miR-16-5p, miR-21-5p, miR-29a-3p, and miR-125b-5p in serum exosomes of mice harboring PDAC and patients with PDAC. Further, miR-16-5p and miR-29a-3p inhibited adipogenesis through decreasing Erlin2 and Cmpk1 expression which downregulates C/EBPβ and PPARγ. Synergistically, miR-29a-3p promotes lipolysis through increasing ATGL expression by suppressing MCT1 expression. Furthermore, PDAC-exosomes deprived of miR-16-5p and miR-29a-3p fail to induce fat loss. Hence, miR-16-5p and miR-29a-3p exosomal miRs are essential for PDAC-induced fat loss. Thus, we unravel that PDAC induces adipose atrophy via exosomal miRs. This knowledge may provide new diagnostic and therapeutic strategies for PDAC-induced cachexia.
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  • 文章类型: Journal Article
    造血老化与造血干细胞(HSC)自我更新能力降低和骨髓偏斜有关。我们报道,表皮生长因子(EGF)的老年小鼠骨髓(BM)HSC的培养抑制了骨髓偏斜,多能集落形成增加,在初次和二次移植试验中HSC再种群增加。老鼠移植,EGF处理的HSC在BMHSC内显示出增加的供体细胞植入,并且在初次和二次移植测定中,向老年小鼠全身施用EGF增加了HSC自我更新能力。Scl/Tal1+造血细胞中显性阴性EGFR的表达导致15月龄小鼠中长期HSC的髓样偏斜和耗竭增加。EGF处理减少了老年HSC的DNA损伤,并将老年HSC的转录组从调节细胞死亡的基因转移到参与HSC自我更新和DNA修复的基因,但对HSC衰老没有影响。这些数据表明EGFR信号传导调节老年HSC的再增殖能力。
    Hematopoietic aging is associated with decreased hematopoietic stem cell (HSC) self-renewal capacity and myeloid skewing. We report that culture of bone marrow (BM) HSCs from aged mice with epidermal growth factor (EGF) suppressed myeloid skewing, increased multipotent colony formation, and increased HSC repopulation in primary and secondary transplantation assays. Mice transplanted with aged, EGF-treated HSCs displayed increased donor cell engraftment within BM HSCs and systemic administration of EGF to aged mice increased HSC self-renewal capacity in primary and secondary transplantation assays. Expression of a dominant negative EGFR in Scl/Tal1+ hematopoietic cells caused increased myeloid skewing and depletion of long term-HSCs in 15-month-old mice. EGF treatment decreased DNA damage in aged HSCs and shifted the transcriptome of aged HSCs from genes regulating cell death to genes involved in HSC self-renewal and DNA repair but had no effect on HSC senescence. These data suggest that EGFR signaling regulates the repopulating capacity of aged HSCs.
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  • 文章类型: Journal Article
    应激颗粒(SGs)是无膜细胞区室,当真核细胞遇到环境压力时,它们通过生物分子缩合机制动态组装。SGs重要用于基因表达和细胞命运调控。SG稳态的失调与人类神经退行性疾病有关,包括肌萎缩侧索硬化症(ALS)和额颞叶痴呆(FTD)。在这里,我们报告了HRD1-SEL1L泛素连接酶复合物通过泛素-蛋白酶体系统(UPS)和UPS相关的ATPasep97特异性调节热休克诱导的SGs的稳态。机械上,HRD1-SEL1L复合物通过内质网(ER)应激的BiP偶联PERK-eIF2α信号轴介导SG稳态,从而协调未折叠蛋白反应(UPR)与SG动力学。此外,我们表明,ER应激的独特分支在SG稳态中起着不同的作用。我们的研究表明,UPS和UPR通过HRD1-SEL1L泛素连接酶共同以应激源依赖的方式维持SG稳态。
    Stress granules (SGs) are membrane-less cellular compartments which are dynamically assembled via biomolecular condensation mechanism when eukaryotic cells encounter environmental stresses. SGs are important for gene expression and cell fate regulation. Dysregulation of SG homeostasis has been linked to human neurodegenerative disorders, including amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD). Here we report that the HRD1-SEL1L ubiquitin ligase complex specifically regulates the homeostasis of heat shock-induced SGs through the ubiquitin-proteasome system (UPS) and the UPS-associated ATPase p97. Mechanistically, the HRD1-SEL1L complex mediates SG homeostasis through the BiP-coupled PERK-eIF2α signaling axis of endoplasmic reticulum (ER) stress, thereby coordinating the unfolded protein response (UPR) with SG dynamics. Furthermore, we show that the distinctive branches of ER stress play differential roles in SG homeostasis. Our study indicates that the UPS and the UPR together via the HRD1-SEL1L ubiquitin ligase to maintain SG homeostasis in a stressor-dependent manner.
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  • 文章类型: Journal Article
    我们的工作旨在探讨转化生长因子β1(TGF-β1)的相互作用作用,泛素特异性加工蛋白酶7(USP7),和Yes相关蛋白(YAP)在脓毒症继发性急性肺损伤(ALI)期间铁凋亡中的作用。我们的研究表明,在急性肺损伤的细胞和动物模型中,TGF-β1加重了铁死亡。此外,YAP通过调节TEAD4与GPX4/SLC7A11启动子的结合来上调谷胱甘肽过氧化物酶4(GPX4)和SLC7A11。此外,大肿瘤抑制激酶1(LATS1)敲低导致YAP表达刺激,而USP7通过去泛素化和稳定LATS1/2下调YAP。YAP过表达或USP7/LATS1沉默减少铁凋亡过程,通过反馈回路调节YAP。然而,TGF-β1通过YAP过表达或LATS1/USP7敲低消除铁死亡的抑制。通过阐明TGF-β1,USP7,LATS1/2和YAP之间的分子相互作用,我们在脓毒症继发性ALI中发现了一个新的铁凋亡调节轴.我们的研究揭示了铁死亡的病理生理学,并提出了脓毒症诱导的ALI的潜在治疗方法。
    Our work aimed to investigate the interactive roles of transforming growth factor β1 (TGF-β1), ubiquitin-specific-processing protease 7 (USP7), and Yes-associated protein (YAP) in ferroptosis during sepsis-secondary acute lung injury (ALI). Our study demonstrated that ferroptosis was aggravated by TGF-β1 in both cellular and animal models of acute lung injury. Additionally, YAP upregulated glutathione peroxidase 4 (GPX4) and SLC7A11 by regulating the binding of TEAD4 to GPX4/SLC7A11 promoters. Furthermore, large tumor suppressor kinase 1 (LATS1) knockdown resulted in YAP expression stimulation, while USP7 downregulated YAP via deubiquitinating and stabilizing LATS1/2. YAP overexpression or USP7/LATS1 silencing reduced ferroptosis process, which regulated YAP through a feedback loop. However, TGF-β1 annulled the repression of ferroptosis by YAP overexpression or LATS1/USP7 knockdown. By elucidating the molecular interactions between TGF-β1, USP7, LATS1/2, and YAP, we identified a new regulatory axis of ferroptosis in sepsis-secondary ALI. Our study sheds light on the pathophysiology of ferroptosis and proposes a potential therapeutic approach for sepsis-induced ALI.
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  • 文章类型: Journal Article
    T细胞疗法在治疗实体瘤中的功效受到体内持久性差的限制。扩散,和细胞毒性,这可以归因于有限和可变的离体激活。在这里,我们提供了体外流体剪切应力(FSS)作用下的T细胞的10天动力学曲线,使用珠缀合的抗CD3/CD28抗体进行和不进行刺激。我们证明了通过FSS与珠子结合的抗CD3/CD28抗体结合的机械刺激产生了协同作用。导致放大和持续的下游信号(NF-κB,c-Fos,和NFAT),活化标志物(CD69和CD25)的表达,增殖和产生促炎细胞因子(IFN-γ,TNF-α,和IL-2)。这项研究代表了原代T细胞对FSS的动态响应的第一个表征。总的来说,我们的发现强调了机械敏感性离子通道介导的机械生物学信号在T细胞活化和适应性中的关键作用,能够制定策略来应对当前与不良免疫治疗结果相关的挑战.
    The efficacy of T cell therapies in treating solid tumors is limited by poor in vivo persistence, proliferation, and cytotoxicity, which can be attributed to limited and variable ex vivo activation. Herein, we present a 10-day kinetic profile of T cells subjected to fluid shear stress (FSS) ex vivo, with and without stimulation utilizing bead-conjugated anti-CD3/CD28 antibodies. We demonstrate that mechanical stimulation via FSS combined with bead-bound anti-CD3/CD28 antibodies yields a synergistic effect, resulting in amplified and sustained downstream signaling (NF-κB, c-Fos, and NFAT), expression of activation markers (CD69 and CD25), proliferation and production of pro-inflammatory cytokines (IFN-γ, TNF-α, and IL-2). This study represents the first characterization of the dynamic response of primary T cells to FSS. Collectively, our findings underscore the critical role of mechanosensitive ion channel-mediated mechanobiological signaling in T cell activation and fitness, enabling the development of strategies to address the current challenges associated with poor immunotherapy outcomes.
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  • 文章类型: Journal Article
    线粒体中发生多种代谢事件。线粒体蛋白从细胞质跨区室的易位取决于前体内的氨基酸序列。在线粒体相关的ER膜,在导入之前,线粒体靶向蛋白的错误折叠会消除新陈代谢。CYP11A1,细胞色素P450胆固醇侧链裂解酶(SCC),从细胞质中导入线粒体基质,催化胆固醇生成孕烯醇酮,代谢过程和哺乳动物生存的重要步骤。多个步骤调节主动折叠SCC的可用性;然而,机制未知。我们通过捕获由其C末端决定的中间蛋白质折叠步骤,确定了在基质中存在SCC的干燥熔融小球状态。活细胞线粒体基质中的中间干燥熔融小球状态是稳定的,具有有限的相互作用网络,并且是无活性的。干燥的熔融小球被氢离子激活,触发胆固醇侧链的裂解,启动类固醇生成。
    Multiple metabolic events occur in mitochondria. Mitochondrial protein translocation from the cytoplasm across compartments depends on the amino acid sequence within the precursor. At the mitochondria associated-ER membrane, misfolding of a mitochondrial targeted protein prior to import ablates metabolism. CYP11A1, cytochrome P450 cholesterol side chain cleavage enzyme (SCC), is imported from the cytoplasm to mitochondrial matrix catalyzing cholesterol to pregnenolone, an essential step for metabolic processes and mammalian survival. Multiple steps regulate the availability of an actively folded SCC; however, the mechanism is unknown. We identified that a dry molten globule state of SCC exists in the matrix by capturing intermediate protein folding steps dictated by its C-terminus. The intermediate dry molten globule state in the mitochondrial matrix of living cells is stable with a limited network of interaction and is inactive. The dry molten globule is activated with hydrogen ions availability, triggering cleavage of cholesterol sidechain, and initiating steroidogenesis.
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  • 文章类型: Journal Article
    电压依赖性阴离子选择性通道亚型1(VDAC1)是细胞代谢和凋亡的关键组成部分,在许多癌症类型中具有重要作用。提供了一个独特的治疗干预点。通过计算机内-体外方法,我们鉴定了一组选择性结合VDAC1并显示对癌细胞特异性的VA分子(VDAC拮抗剂)。生化表征表明,VA分子可以通过与内源性配体NADH竞争部分共享的结合位点,以微摩尔亲和力直接与VDAC1相互作用。NADH置换导致线粒体窘迫和细胞增殖减少,特别是与非癌细胞相比。在源自肝内胆管癌患者的类器官上进行的实验表明,与常规治疗如吉西他滨相比,用VA分子治疗后,细胞活力的剂量依赖性降低,对健康细胞的影响较低。VA分子是代表通过精确的代谢干预进一步优化和发展为癌症治疗策略的有希望的候选物的化学实体。
    The voltage-dependent anion-selective channel isoform 1 (VDAC1) is a pivotal component in cellular metabolism and apoptosis with a prominent role in many cancer types, offering a unique therapeutic intervention point. Through an in-silico-to-in-vitro approach we identified a set of VA molecules (VDAC Antagonists) that selectively bind to VDAC1 and display specificity toward cancer cells. Biochemical characterization showed that VA molecules can directly interact with VDAC1 with micromolar affinity by competing with the endogenous ligand NADH for a partially shared binding site. NADH displacement results in mitochondrial distress and reduced cell proliferation, especially when compared to non-cancerous cells. Experiments performed on organoids derived from intrahepatic cholangiocarcinoma patients demonstrated a dose-dependent reduction in cell viability upon treatment with VA molecules with lower impact on healthy cells than conventional treatments like gemcitabine. VA molecules are chemical entities representing promising candidates for further optimization and development as cancer therapy strategies through precise metabolic interventions.
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  • 文章类型: Journal Article
    肌肉收缩对动物的生存至关重要,肌节是这个过程的基本单位。然而,许多保守的肌节蛋白的功能仍然未知,因为它们的突变体没有表现出明显的缺陷。为了解决这个问题,利用秀丽隐杆线虫作为模型生物来研究体壁肌肉中的RSU-1功能。发现RSU-1与UNC-97在致密体和M线处共定位,它对于调节老化蠕虫的运动尤其重要,而不是年轻的蠕虫。这表明RSU-1在衰老过程中具有维持肌肉功能的特定功能。此外,RSU-1和UNC-97/PINCH之间的相互作用对于RSU-1调节运动至关重要,保留长丝结构,并在整个衰老过程中维持M线和致密体。总的来说,这些发现强调了RSU-1通过与UNC-97的相互作用在维持衰老蠕虫的适当肌肉细胞功能方面的重要贡献。
    Muscle contraction is vital for animal survival, and the sarcomere is the fundamental unit for this process. However, the functions of many conserved sarcomere proteins remain unknown, as their mutants do not exhibit obvious defects. To address this, Caenorhabditis elegans was utilized as a model organism to investigate RSU-1 function in the body wall muscle. RSU-1 is found to colocalize with UNC-97 at the dense body and M-line, and it is particularly crucial for regulating locomotion in aging worms, rather than in young worms. This suggests that RSU-1 has a specific function in maintaining muscle function during aging. Furthermore, the interaction between RSU-1 and UNC-97/PINCH is essential for RSU-1 to modulate locomotion, preserve filament structure, and sustain the M-line and dense body throughout aging. Overall, these findings highlight the significant contribution of RSU-1, through its interaction with UNC-97, in maintaining proper muscle cell function in aging worms.
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  • 文章类型: Journal Article
    由中心粒和中心周围物质(PCM)组成的中心体,作为有丝分裂过程中微管聚合的平台。尽管已经报道了一些中心粒和PCM蛋白利用液-液相分离(LLPS)来执行它们的有丝分裂功能,中心体激酶是否以及如何在有丝分裂中发挥凝聚作用尚不清楚。这里我们揭示了Aurora-A,调节中心体形成和功能的一个关键中心体激酶,在体外或在中心体与前期进行相分离,由其固有无序区域(IDR)内的保守正电荷残基及其N端和C端之间的分子内相互作用介导。极光-A凝聚影响中心体成熟,分离,纺锤体极的初始纺锤体形成及其激酶活性。此外,BuGZ与Aurora-A交互以增强其LLPS和中心体功能。因此,我们建议Aurora-A与BuGZ合作,在中心体中展示LLPS的特性,从前期控制其依赖中心体的功能。
    Centrosomes composed of centrioles and the pericentriolar material (PCM), serve as the platform for microtubule polymerization during mitosis. Despite some centriole and PCM proteins have been reported to utilize liquid-liquid phase separation (LLPS) to perform their mitotic functions, whether and how centrosomal kinases exert the coacervation in mitosis is still unknown. Here we reveal that Aurora-A, one key centrosomal kinase in regulating centrosome formation and functions, undergoes phase separation in vitro or in centrosomes from prophase, mediated by the conserved positive-charged residues inside its intrinsic disordered region (IDR) and the intramolecular interaction between its N- and C-terminus. Aurora-A condensation affects centrosome maturation, separation, initial spindle formation from the spindle pole and its kinase activity. Moreover, BuGZ interacts with Aurora-A to enhance its LLPS and centrosome functions. Thus, we propose that Aurora-A collaborates with BuGZ to exhibit the property of LLPS in centrosomes to control its centrosome-dependent functions from prophase.
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