FIB-SEM tomography

FIB - SEM 层析成像
  • 文章类型: Journal Article
    能源危机带来的紧迫挑战,除了先进电子产品的散热之外,已经开始对开发高导热聚合物复合材料的需求不断增长。静电纺丝复合垫,以其灵活性而闻名,渗透性,高浓度和取向度的导电填料,作为解决这一需求的主要候选人之一。这项研究探讨了氮化硼(BN)的功效及其潜在的替代品,氮化硅(SiN)纳米颗粒,增强静电纺丝复合热塑性聚氨酯(TPU)纤维和垫的热性能。从FIB-SEM成像获得的3D重建模型提供了对复合纤维形态的有价值的见解,通过单个复合纤维的扫描热显微镜和复合垫的红外热成像来帮助解释测得的热性能。值得注意的是,我们发现TPU-SiN纤维比TPU-BN纤维表现出优异的导热性,在涂覆在铜管上的垫子中观察到的表面温度高达6°C。我们的结果强调了纳米颗粒的排列和纤维形态在改善电纺复合材料中的热传导中的关键作用。此外,引入SiN纳米颗粒作为更合适的填料,用于电纺TPU纤维和垫的热传导增强,这表明智能纺织品和热管理应用的巨大潜力。
    The urgent challenges posed by the energy crisis, alongside the heat dissipation of advanced electronics, have embarked on a rising demand for the development of highly thermally conductive polymer composites. Electrospun composite mats, known for their flexibility, permeability, high concentration and orientational degree of conductive fillers, stand out as one of the prime candidates for addressing this need. This study explores the efficacy of boron nitride (BN) and its potential alternative, silicon nitride (SiN) nanoparticles, in enhancing the thermal performance of the electrospun composite thermoplastic polyurethane (TPU) fibers and mats. The 3D reconstructed models obtained from FIB-SEM imaging provided valuable insights into the morphology of the composite fibers, aiding the interpretation of the measured thermal performance through scanning thermal microscopy for the individual composite fibers and infrared thermography for the composite mats. Notably, we found that TPU-SiN fibers exhibit superior heat conduction compared to TPU-BN fibers, with up to a 6 °C higher surface temperature observed in mats coated on copper pipes. Our results underscore the crucial role of arrangement of nanoparticles and fiber morphology in improving heat conduction in the electrospun composites. Moreover, SiN nanoparticles are introduced as a more suitable filler for heat conduction enhancement of electrospun TPU fibers and mats, suggesting immense potential for smart textiles and thermal management applications.
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  • 文章类型: Journal Article
    多年来,FIB-SEM层析成像技术已成为纳米级微结构三维重建的一项极其重要的技术。本文详细描述了执行此分析所需的步骤,从实验设置到数据分析和最终重建。为了证明该技术的多功能性,还总结了一份完整的申请清单,从电池到页岩,甚至一些类型的软材料。此外,技术的不断发展,例如推出最新型号的等离子体和低温FIB,可以为使用这种技术对一大类软材料进行分析开辟道路,虽然引入新的机器学习和深度学习系统不仅会提高最终数据的分辨率和质量,同时也扩大了数据集处理的自动化程度和效率。这些未来的发展,结合已经可靠并广泛用于各种研究领域的技术,肯定会成为电子显微镜和材料表征的常规工具。
    Over the years, FIB-SEM tomography has become an extremely important technique for the three-dimensional reconstruction of microscopic structures with nanometric resolution. This paper describes in detail the steps required to perform this analysis, from the experimental setup to the data analysis and final reconstruction. To demonstrate the versatility of the technique, a comprehensive list of applications is also summarized, ranging from batteries to shale rocks and even some types of soft materials. Moreover, the continuous technological development, such as the introduction of the latest models of plasma and cryo-FIB, can open the way towards the analysis with this technique of a large class of soft materials, while the introduction of new machine learning and deep learning systems will not only improve the resolution and the quality of the final data, but also expand the degree of automation and efficiency in the dataset handling. These future developments, combined with a technique that is already reliable and widely used in various fields of research, are certain to become a routine tool in electron microscopy and material characterization.
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  • 文章类型: Journal Article
    Li1.5Al0.5Ge1.5(PO4)3(LAGP)由于其出色的空气稳定性,是一种有前途的用于全固态电池的氧化物固体电解质,可接受的电化学稳定性窗口,和具有成本效益的前体材料。然而,晶界的存在及其相关的形貌和组成阻碍了氧化物固态电解质的离子导电性能的进一步改善。因此,这些关键因素代表了现代氧化物基固态电解质的改进设计的主要障碍。这项研究建立了晶界相的影响之间的相关性,它们的三维形态,以及在不同烧结条件下形成的组成对LAGP整体离子电导率的影响。放电等离子烧结已用于在不同温度下烧结氧化物固体电解质材料,而联合的恒电位电化学阻抗谱,3DFIB-SEM层析成像,XRD,和固态NMR/材料建模方法提供了对形态的影响的深入分析,结构,以及影响总离子电导率的晶界相的组成。这项工作建立了第一个3DFIB-SEM层析成像分析LAGP形态和在纳米级水平的晶界中形成的第二相,而相关的31P和27AlMASNMR研究以及材料建模表明,晶界材料由Li4P2O7和无序的Li9Al3(P2O7)3(PO4)2相组成。定量31PMASNMR测量表明,当无序的Li9Al3(P2O7)3(PO4)2相主导晶界组成,而高度有序的Li4P2O7相的贡献减少时,680°CSPS制备可实现LAGP系统的最佳离子电导率。而27AlMASNMR数据显示,在整个这一系列烧结温度下,每个阶段都经历了最小的结构变化。
    Li1.5Al0.5Ge1.5(PO4)3 (LAGP) is a promising oxide solid electrolyte for all-solid-state batteries due to its excellent air stability, acceptable electrochemical stability window, and cost-effective precursor materials. However, further improvement in the ionic conductivity performance of oxide solid-state electrolytes is hindered by the presence of grain boundaries and their associated morphologies and composition. These key factors thus represent a major obstacle to the improved design of modern oxide based solid-state electrolytes. This study establishes a correlation between the influence of the grain boundary phases, their 3D morphology, and compositions formed under different sintering conditions on the overall LAGP ionic conductivity. Spark plasma sintering has been employed to sinter oxide solid electrolyte material at different temperatures with high compacity values, whereas a combined potentiostatic electrochemical impedance spectroscopy, 3D FIB-SEM tomography, XRD, and solid-state NMR/materials modeling approach provides an in-depth analysis of the influence of the morphology, structure, and composition of the grain boundary phases that impact the total ionic conductivity. This work establishes the first 3D FIB-SEM tomography analysis of the LAGP morphology and the secondary phases formed in the grain boundaries at the nanoscale level, whereas the associated 31P and 27Al MAS NMR study coupled with materials modeling reveals that the grain boundary material is composed of Li4P2O7 and disordered Li9Al3(P2O7)3(PO4)2 phases. Quantitative 31P MAS NMR measurements demonstrate that optimal ionic conductivity for the LAGP system is achieved for the 680 °C SPS preparation when the disordered Li9Al3(P2O7)3(PO4)2 phase dominates the grain boundary composition with reduced contributions from the highly ordered Li4P2O7 phases, whereas the 27Al MAS NMR data reveal that minimal structural change is experienced by each phase throughout this suite of sintering temperatures.
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  • 文章类型: Journal Article
    在锂离子电池中作为阳极材料的圆形石墨颗粒的电化学行为强烈取决于颗粒性质。球化过程直接影响这些性能,包括确定液体电解质和碳表面之间直接接触程度的开口孔隙率。因此,开放孔和封闭孔之间的比例的量化是非常令人感兴趣的。这里,我们从FIB-SEM层析图量化球形多孔石墨颗粒的开放和封闭孔隙率。量化是基于两个发展来实现的:(1)新的样品制备策略和(2)新开发的基于神经网络的图像评估方案。样品制备策略涉及将许多石墨粉颗粒嵌入铟中,从而能够在一个FIB/SEM断层图像中研究几个石墨颗粒,并具有高稳定性和导电嵌入材料与多孔石墨之间的高对比度。通过卷积神经网络形式的机器学习实现了对闭孔和开孔的定量评估。卷积神经网络用于检测块状石墨,并通过进一步的形态学操作,确定闭孔和开放孔。通过将自动创建的量化与手动参考值进行比较来确定误差。我们的两种不同球化石墨样品的孔隙率数据与氮物理吸附测量的相应结果在质量上非常吻合。这种方法可以从多孔粉末中进行定量数据评估,并支持对锂离子电池中电化学行为相关性的理解。
    The electrochemical behaviour of rounded graphite particles as anode material in a lithium-ion battery strongly depends on the particle properties. The spheroidization process directly affects these properties, including the open porosity that determines the extent of direct contact between liquid electrolyte and carbon surface. Therefore, the quantification of the proportion between open and closed pores is of great interest. Here, we quantify the open and closed porosity of spheroidized porous graphite particles from FIB-SEM tomograms. Quantification is achieved based on two developments: (1) a new sample preparation strategy and (2) a newly developed image evaluation scheme based on neural networks. The sample preparation strategy involves embedding of many graphite powder particles in indium enabling the investigation of several graphite particles in one FIB/SEM tomogram with high stability and with high contrast between the conductive embedding material and porous graphite. A quantitative evaluation of closed and open porosity is achieved by machine learning in form of convolutional neural networks. The convolutional neural network is used to detect the bulk graphite and by further morphological operations, closed and open pores are identified. An error is determined by comparing automatically created quantifications with manual reference values. Our porosity data for two differently spheroidized graphite samples agree qualitatively well with corresponding results from nitrogen physisorption measurements. This approach may allow quantitative data evaluation from porous powders and support understanding of the correlation to the electrochemical behaviour in the lithium-ion battery.
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  • 文章类型: Journal Article
    FIB-SEM(聚焦离子束扫描电子显微镜)是一种成像技术,可以在纳米级对细胞和组织进行3D超微结构分析。获得的FIB-SEM数据噪声很大,这使得去噪成为卷解释之前的一个重要步骤。高斯滤波是该领域的标准方法,因为它快速且直接。然而,由于它的线性性质,忽略了整个体积结构的快速变化,因此它倾向于模糊生物学特征。为了解决这个问题,我们为FIB-SEM开发了一种新的保持结构的降噪方法。它具有在利用高斯滤波的简单性的同时使滤波局部适应生物结构的能力。它使用光流(OF)来估计整个体积的结构特征的变化,以便在后续滤波之前用高斯函数对它们进行补偿。正如来自不同样本和在不同条件下获得的数据集定性和客观地证明的那样,我们的去噪方法优于标准高斯滤波,并且在降噪和保持结构清晰度方面与最先进的方法竞争。
    FIB-SEM (Focused Ion Beam-Scanning Electron Microscopy) is an imaging technique that allows 3D ultrastructural analysis of cells and tissues at the nanoscale. The acquired FIB-SEM data are highly noisy, which makes denoising an essential step prior to volume interpretation. Gaussian filtering is a standard method in the field because it is fast and straightforward. However, it tends to blur the biological features due to its linear nature that ignores the rapid changes of the structures throughout the volume. To address this issue, we have developed a new approach to structure-preserving noise reduction for FIB-SEM. It has abilities to locally adapt the filtering to the biological structures while taking advantage of the simplicity of Gaussian filtering. It uses the Optical Flow (OF) to estimate the variations of the structural features across the volume, so that they are compensated before the subsequent filtering with a Gaussian function. As demonstrated qualitatively and objectively with datasets from different samples and acquired under different conditions, our denoising approach outperforms the standard Gaussian filtering and is competitive with state-of-the-art methods in terms of noise reduction and preservation of the sharpness of the structures.
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  • 文章类型: Journal Article
    目的:聚焦离子束-扫描电子显微镜(FIB-SEM)可以在纳米级对细胞和组织进行三维超微结构分析。该技术用FIB迭代地去除样品的一部分,并从暴露的表面拍摄SEM图像。切片厚度通常高于图像像素大小,以减少采集时间,从而导致各向异性分辨率。在这项工作中,我们沿着切片方向探索新颖的插值方法,以产生各向同性分辨率,并促进FIB-SEM3D体积的正确解释。
    方法:在这种情况下,通常在假设通过连续图像的变化相对平滑的情况下应用经典插值方法。然而,例如,样品中的结构的实际3D布置可以引起FIB-SEM堆叠的连续图像之间的生物特征的显著变化。我们已经开发了一种新颖的插值策略,该策略通过使用光流(OF)来估计这种变化。作为一个中间阶段,通过对准生物结构的空间区域来产生OF补偿图像。然后从这些OF补偿图像生成插值图像。通过将插值后的图像与各向异性堆叠的原始图像交错来组装最终的各向同性堆叠。
    结果:使用基于皮尔逊相关系数(PCC)的客观评估和基于视觉结果的定性评估,比较了OF驱动和经典插值方法,使用公共数据集和代表性各向异性条件。客观评估表明,OF驱动插值总是产生更高的PCC值,插值图像更接近地面真相。定性评估证实了这些结果,并证实了经典插值可能使连续图像之间具有实质性变化的区域模糊,而OF驱动的插值提供了清晰度。
    结论:我们开发了一种OF驱动的插值方法,用于从实验各向异性数据生成具有各向同性分辨率的FIB-SEM堆叠。它适应通过FIB-SEM堆叠的图像观察到的生物结构的快速变化。我们的方法优于经典插值,并在连续实验图像之间存在显着变化的情况下设法产生清晰的插值视图。
    OBJECTIVE: Focused Ion Beam - Scanning Electron Microscopy (FIB-SEM) allows three-dimensional ultrastructural analysis of cells and tissues at the nanoscale. The technique iteratively removes a section of the sample with a FIB and takes an SEM image from the exposed surface. The section thickness is usually higher than the image pixel size to reduce acquisition time, thus resulting in anisotropic resolution. In this work, we explore novel interpolation methods along the sectioning direction to produce isotropic resolution and facilitate proper interpretation of the FIB-SEM 3D volumes.
    METHODS: Classical interpolation methods are usually applied in this context under the assumption that the changes through successive images are relatively smooth. However, the actual 3D arrangement of the structures in the sample may cause significant changes in the biological features between consecutive images of the FIB-SEM stacks. We have developed a novel interpolation strategy that accounts for this variation by using the Optical Flow (OF) to estimate it. As an intermediate stage, OF-compensated images are produced by aligning the spatial regions of the biological structures. Interpolated images are then generated from these OF-compensated images. The final isotropic stack is assembled by interleaving the interpolated images with the original images of the anisotropic stack.
    RESULTS: OF-driven and classical interpolation methods were compared using an objective assessment based on Pearson Correlation Coefficient (PCC) and a qualitative evaluation based on visual results, using public datasets and representative anisotropy conditions. The objective assessment demonstrated that the OF-driven interpolation always yields higher PCC values, with interpolated images closer to the ground truth. The qualitative evaluation corroborated those results and confirmed that classical interpolation may blur areas with substantial changes between consecutive images whereas OF-driven interpolation provides sharpness.
    CONCLUSIONS: We have developed an OF-driven interpolation approach to generating FIB-SEM stacks with isotropic resolution from experimental anisotropic data. It adapts to the rapid variation of the biological structures observed through the images of the FIB-SEM stack. Our approach outperforms classical interpolation and manages to produce sharp interpolated views in cases where there are significant changes between consecutive experimental images.
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  • 文章类型: Journal Article
    Haemogregarinidae家族(Apicomplex:Adeleina)包括感染哺乳动物的原生动物,鸟,两栖动物,鱼,和爬行动物。先前已经描述了木草的一些形态特征,但是寄生虫与红细胞的关系仍然知之甚少。为了了解木乳杆菌感染的红细胞的结构结构,使用TEM和FIB-SEM层析成像进行基于电子显微镜的三维重建。结果表明,红细胞内部大配子细胞阶段的发育与宿主细胞质中裂隙样结构的增加有关。此外,通过3D可视化技术探索了与寄生虫红细胞内发育相关的其他方面。我们观察到寄生虫体内内膜复合物(IMC)的大量延伸的内陷,这是由寄生虫后端折叠引起或诱导的。可见与IMC折叠相关区域相关的小管状结构。一起来看,结果为原生动物木脂素诱导的红细胞重塑提供了新的信息。
    The Haemogregarinidae family (Apicomplexa: Adeleina) comprises hemoprotozoa that infect mammals, birds, amphibians, fish, and reptiles. Some morphological characteristics of the Cyrilia lignieresi have been described previously, but the parasite-erythrocyte relationship is still poorly understood. In order to understand the structural architecture of C. lignieresi-infected red blood cells, electron microscopy-based three-dimensional reconstruction was carried out using TEM as well as FIB-SEM tomography. Results showed that development of the macrogametocyte-stage inside the red blood cell is related to an increase in cleft-like structures in the host cell cytoplasm. Furthermore, other aspects related to parasite intraerythrocytic development were explored by 3D visualization techniques. We observed the invagination of a large extension of the Inner Membrane Complex (IMC) on the parasite body, which results from or induces a folding of the posterior end of the parasite. Small tubular structures were seen associated with areas related to IMC folding. Taken together, results provide new information on the remodeling of erythrocytes induced by the protozoan C. lignieresi.
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  • 文章类型: Journal Article
    We review here the Stenciling Principle for extracellular matrix mineralization that describes a double-negative process (inhibition of inhibitors) that promotes mineralization in bone and other mineralized tissues, whereas the default condition of inhibition alone prevents mineralization elsewhere in soft connective tissues. The stenciling principle acts across multiple levels from the macroscale (skeleton/dentition vs soft connective tissues), to the microscale (for example, entheses, and the tooth attachment complex where the soft periodontal ligament is situated between mineralized tooth cementum and mineralized alveolar bone), and to the mesoscale (mineral tessellation). It relates to both small-molecule (e.g. pyrophosphate) and protein (e.g. osteopontin) inhibitors of mineralization, and promoters (enzymes, e.g. TNAP, PHEX) that degrade the inhibitors to permit and regulate mineralization. In this process, an organizational motif for bone mineral arises that we call crossfibrillar mineral tessellation where mineral formations - called tesselles - geometrically approximate prolate ellipsoids and traverse multiple collagen fibrils (laterally). Tesselle growth is directed by the structural anisotropy of collagen, being spatially restrained in the shorter transverse tesselle dimensions (averaging 1.6 × 0.8 × 0.8 μm, aspect ratio 2, length range 1.5-2.5 μm). Temporo-spatially, the tesselles abut in 3D (close ellipsoid packing) to fill the volume of lamellar bone extracellular matrix. Poorly mineralized interfacial gaps between adjacent tesselles remain discernable even in mature lamellar bone. Tessellation of a same, small basic unit to form larger structural assemblies results in numerous 3D interfaces, allows dissipation of critical stresses, and enables fail-safe cyclic deformations. Incomplete tessellation in osteomalacia/odontomalacia may explain why soft osteomalacic bones buckle and deform under loading.
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  • 文章类型: Journal Article
    ATI718Plus®是一种抗蠕变镍基高温合金,在高温下具有高强度和优异的抗氧化性。本研究的重点是在干燥和潮湿的空气中,在850°C直至4000小时的氧化过程中,在ATI718Plus高温合金上形成的鳞片和下层的多尺度2D和3D表征(形态和化学)。使用各种微观方法(SEM,TEM和STEM),能量色散X射线光谱和电子衍射。通过FIB-SEM层析成像实现了微观结构特征的3D可视化。在干燥空气中氧化时,ATI718Plus开发了一种保护,具有双层结构的致密Cr2O3垢。外Cr2O3层由柱状的较粗晶粒组成,而内心的特征很好,等轴晶粒。在湿空气中形成的Cr2O3水垢是单层的并且具有非常细的晶粒。本文讨论了结构之间的区别,在这两种环境中形成的氧化皮和近表面区域的化学和三维相分布。电子显微镜/光谱学的发现与微观结构的三维重建相结合,提供了对氧化环境在纳米级ATI718Plus结构中的作用的原始见解。
    The ATI 718Plus® is a creep-resistant nickel-based superalloy exhibiting high strength and excellent oxidation resistance in high temperatures. The present study is focused on multiscale 2D and 3D characterization (morphological and chemical) of the scale and the layer beneath formed on the ATI 718Plus superalloy during oxidation at 850 °C up to 4000 h in dry and wet air. The oxidized samples were characterized using various microscopic methods (SEM, TEM and STEM), energy-dispersive X-ray spectroscopy and electron diffraction. The 3D visualization of the microstructural features was achieved by means of FIB-SEM tomography. When oxidized in dry air, the ATI 718Plus develops a protective, dense Cr2O3 scale with a dual-layered structure. The outer Cr2O3 layer is composed of coarser grains with a columnar shape, while the inner one features fine, equiaxed grains. The Cr2O3 scale formed in wet air is single-layered and features very fine grains. The article discusses the difference between the structure, chemistry and three-dimensional phase distribution of the oxide scales and near-surface areas developed in the two environments. Electron microscopy/spectroscopy findings combined with the three-dimensional reconstruction of the microstructure provide original insight into the role of the oxidation environment on the structure of the ATI 718Plus at the nanoscale.
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  • 文章类型: Journal Article
    在电子显微镜中,相混合物中不同有机材料的区别受到了阻碍,因为电子散射在主要由轻元素组成的碳基材料中没有明显差异。对比增强的成功策略是选择性染色,其中材料混合物的一个相被较重的元素标记,但并非所有有机材料都有合适的染色剂。有机太阳能电池的体异质结(BHJ)吸收层也是如此,由供体和受体结构域的互穿网络组成。域结构强烈影响功率转换效率,和纳米形貌优化通常需要有关具有纳米分辨率的域的大小和互连性的真实空间信息。在这项工作中,我们已经开发了一种有效的方法,通过均匀的铜渗透来选择性地染色含硫聚合物,在聚合物:富勒烯BHJ层的扫描(透射)电子显微镜(S(T)EM)图像中产生强烈的材料对比度。通过聚焦离子束铣削为STEM制备BHJ层的横截面薄片,并将其作为铜源附着在Cu剥离网格上。在空气中200°C热处理3小时后,含硫聚合物被Cu均匀渗透,而富勒烯不受影响。选择性Cu染色用于绘制PTB7:PC71BMBHJ层中的相分布图,这些层使用不同的加工添加剂来定制纳米形态。聚合物和富勒烯域之间的强烈对比是通过聚焦离子束/扫描电子显微镜断层扫描对域结构进行三维重建的前提。
    The distinction of different organic materials in phase mixtures is hampered in electron microscopy because electron scattering does not strongly differ in carbon-based materials that mainly consist of light elements. A successful strategy for contrast enhancement is selective staining where one phase of a material mixture is labeled by heavier elements, but suitable staining agents are not available for all organic materials. This is also the case for bulk-heterojunction (BHJ) absorber layers of organic solar cells, which consist of interpenetrating networks of donor and acceptor domains. The domain structure strongly influences the power conversion efficiency, and nanomorphology optimization often requires real-space information on the sizes and interconnectivity of domains with nanometer resolution. In this work, we have developed an efficient approach to selectively stain sulfur-containing polymers by homogeneous Cu infiltration, which generates strong material contrast in scanning (transmission) electron microscopy (S(T)EM) images of polymer:fullerene BHJ layers. Cross-section lamellae of BHJ layers are prepared for STEM by focused-ion-beam milling and are attached to a Cu lift-out grid as a copper source. After thermal treatment at 200 °C for 3 h in air, sulfur-containing polymers are homogeneously infiltrated by Cu, while the fullerenes are not affected. Selective Cu staining is applied to map the phase distribution in PTB7:PC71BM BHJ layers fabricated with different processing additives to tailor the nanomorphology. The strong contrast between polymer and fullerene domains is the prerequisite for the three-dimensional reconstruction of the domain structure by focused-ion-beam/scanning-electron-microscopy tomography.
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