FABP5

FABP5
  • 文章类型: Journal Article
    背景:幽门螺杆菌(H.pylori)感染和代谢功能障碍相关的脂肪变性肝病(MASLD)引起了越来越多的临床关注。然而,目前的研究大多涉及横断面研究和荟萃分析,实验机制探索仍需改进。本研究旨在探讨幽门螺杆菌影响MASLD的机制。
    方法:我们建立了两种幽门螺杆菌感染(CagA阳性和CagA阴性)小鼠模型,分别喂养16周的食物饮食(CD)或高脂饮食(HFD)。体重,肝脏甘油三酯,血糖,血清生化参数,炎症因子,测量胰岛素抵抗,并对肝脏组织进行组织学分析。对小鼠肝脏进行转录组RNA测序分析。
    结果:尽管幽门螺杆菌感染对小鼠血清炎症因子水平和血清生化指标没有显著影响,血清胰岛素和稳态模型评估胰岛素抵抗水平在CD模式下增加。相比之下,H.pyloriCagA+感染可显著加重HFD诱导的肝脏病理性脂肪变性,升高血清炎症因子和脂质代谢指标。CD组的肝脏转录组学分析显示,幽门螺杆菌CagA感染组中有767个差异表达基因(DEGs),幽门螺杆菌CagA感染组中有1473个DEGs,在KEGG分析中,“非酒精性脂肪性肝病”途径显着丰富。幽门螺杆菌CagA+感染联合HFD喂养组578DEGs,幽门螺杆菌CagA-感染组820DEGs。HFD组中的DEGs在“脂肪酸降解”和“PPAR途径中显著富集。“探索不同CagA状态对小鼠肝脏的影响,发现脂肪酸结合蛋白5在CagA-H.pylori中差异表达。DEG富集途径集中在“PPAR途径”和“脂肪酸降解”中。
    结论:临床医生有望了解幽门螺杆菌对MASLD的影响,并更好地了解和管理MASLD。幽门螺杆菌感染可能通过调节肝脏脂质代谢来加剧MASLD的发展,幽门螺杆菌毒力因子CagA在这种调节中起着至关重要的作用。
    BACKGROUND: The relationship between Helicobacter pylori (H. pylori) infection and metabolic dysfunction-associated steatotic liver disease (MASLD) has attracted increased clinical attention. However, most of those current studies involve cross-sectional studies and meta-analyses, and experimental mechanistic exploration still needs to be improved. This study aimed to investigate the mechanisms by which H. pylori impacts MASLD.
    METHODS: We established two H. pylori-infected (Cag A positive and Cag A negative) mouse models with 16 weeks of chow diet (CD) or high-fat diet (HFD) feeding. Body weight, liver triglyceride, blood glucose, serum biochemical parameters, inflammatory factors, and insulin resistance were measured, and histological analysis of liver tissues was performed. Mouse livers were subjected to transcriptome RNA sequencing analysis.
    RESULTS: Although H. pylori infection could not significantly affect serum inflammatory factor levels and serum biochemical parameters in mice, serum insulin and homeostatic model assessment for insulin resistance levels increased in CD mode. In contrast, H. pylori Cag A + infection significantly aggravated hepatic pathological steatosis induced by HFD and elevated serum inflammatory factors and lipid metabolism parameters. Hepatic transcriptomic analysis in the CD groups revealed 767 differentially expressed genes (DEGs) in the H. pylori Cag A + infected group and 1473 DEGs in the H. pylori Cag A- infected group, and the \"nonalcoholic fatty liver disease\" pathway was significantly enriched in KEGG analysis. There were 578 DEGs in H. pylori Cag A + infection combined with the HFD feeding group and 820 DEGs in the H. pylori Cag A- infected group. DEGs in the HFD groups were significantly enriched in \"fatty acid degradation\" and \"PPAR pathway.\" Exploring the effect of different Cag A statuses on mouse liver revealed that fatty acid binding protein 5 was differentially expressed in Cag A- H. pylori. DEG enrichment pathways were concentrated in the \"PPAR pathway\" and \"fatty acid degradation.\"
    CONCLUSIONS: Clinicians are expected to comprehend the impact of H. pylori on MASLD and better understand and manage MASLD. H. pylori infection may exacerbate the development of MASLD by regulating hepatic lipid metabolism, and the H. pylori virulence factor Cag A plays a vital role in this regulation.
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  • 文章类型: Journal Article
    肿瘤相关巨噬细胞(TAM)代表胰腺神经内分泌肿瘤(pNEN)的肿瘤微环境(TME)中的主要细胞成分。有越来越多的证据强调外泌体在促进肿瘤细胞和TAM之间的通讯中的关键作用,从而有助于建立转移前的生态位。尽管如此,来自肿瘤细胞的外泌体在缺氧条件下影响pNEN中巨噬细胞极化的特定机制,以及这些相互作用支持癌症转移的方式,在很大程度上仍未被探索。认识到外泌体转移可以改变细胞行为的miRNA的能力,我们的研究发现miR-4488在低氧pNEN细胞来源的外泌体中显著过表达.此外,我们观察到吸收循环外泌体miR-4488的巨噬细胞发生M2样极化.我们的研究表明,miR-4488通过直接靶向和抑制巨噬细胞中的RTN3来促进M2样极化。这种对RTN3的抑制增强脂肪酸氧化并通过FABP5的相互作用和下调激活PI3K/AKT/mTOR信号通路。此外,M2极化巨噬细胞通过释放MMP2促进转移前小生境的形成并促进pNEN转移,从而在pNEN细胞中建立涉及miR-4488,RTN3,FABP5和MMP2的正反馈环。一起,这些发现揭示了低氧pNEN细胞外泌体miRNAs在介导pNEN细胞与肝内巨噬细胞相互作用中的作用,表明miR-4488具有作为pNEN的有价值的生物标志物和治疗靶标的潜力。
    Tumor-associated macrophages (TAMs) represent a predominant cellular component within the tumor microenvironment (TME) of pancreatic neuroendocrine neoplasms (pNENs). There is a growing body of evidence highlighting the critical role of exosomes in facilitating communication between tumor cells and TAMs, thereby contributing to the establishment of the premetastatic niche. Nonetheless, the specific mechanisms through which exosomes derived from tumor cells influence macrophage polarization under hypoxic conditions in pNENs, and the manner in which these interactions support cancer metastasis, remain largely unexplored. Recognizing the capacity of exosomes to transfer miRNAs that can modify cellular behaviors, our research identified a significant overexpression of miR-4488 in exosomes derived from hypoxic pNEN cells. Furthermore, we observed that macrophages that absorbed circulating exosomal miR-4488 underwent M2-like polarization. Our investigations revealed that miR-4488 promotes M2-like polarization by directly targeting and suppressing RTN3 in macrophages. This suppression of RTN3 enhances fatty acid oxidation and activates the PI3K/AKT/mTOR signaling pathway through the interaction and downregulation of FABP5. Additionally, M2 polarized macrophages contribute to the formation of the premetastatic niche and advance pNENs metastasis by releasing MMP2, thereby establishing a positive feedback loop involving miR-4488, RTN3, FABP5, and MMP2 in pNEN cells. Together, these findings shed light on the role of exosomal miRNAs from hypoxic pNEN cells in mediating interactions between pNEN cells and intrahepatic macrophages, suggesting that miR-4488 holds potential as a valuable biomarker and therapeutic target for pNENs.
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  • 文章类型: Letter
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  • 文章类型: Journal Article
    糖尿病肾病(DKD)是糖尿病最常见的并发症之一。临床上没有特定的药物。我们先前已经证明,抑制微粒体前列腺素E合酶2(mPGES-2)通过增强β细胞功能和促进胰岛素产生来减轻2型糖尿病。然而,mPGES-2是否参与DKD尚不清楚.这里,我们旨在分析mPGES-2表达增强与肾脂代谢稳态受损以及随后的肾损害之间的关联.值得注意的是,mPGES-2的整体敲除或药物阻断减轻了糖尿病足细胞损伤和肾小管间质纤维化,从而改善脂质积累和脂毒性。这些发现在足细胞或小管特异性mPGES-2缺陷小鼠中得到进一步证实。机械上,mPGES-2和Rev-Erbα竞争血红素结合以调节糖尿病肾脏中脂肪酸结合蛋白5的表达和脂质代谢。我们的发现提示了通过mPGES-2抑制治疗DKD的潜在策略。
    Diabetic kidney disease (DKD) is one of the most common complications of diabetes, and no specific drugs are clinically available. We have previously demonstrated that inhibiting microsomal prostaglandin E synthase-2 (mPGES-2) alleviated type 2 diabetes by enhancing β cell function and promoting insulin production. However, the involvement of mPGES-2 in DKD remains unclear. Here, we aimed to analyze the association of enhanced mPGES-2 expression with impaired metabolic homeostasis of renal lipids and subsequent renal damage. Notably, global knockout or pharmacological blockage of mPGES-2 attenuated diabetic podocyte injury and tubulointerstitial fibrosis, thereby ameliorating lipid accumulation and lipotoxicity. These findings were further confirmed in podocyte- or tubule-specific mPGES-2-deficient mice. Mechanistically, mPGES-2 and Rev-Erbα competed for heme binding to regulate fatty acid binding protein 5 expression and lipid metabolism in the diabetic kidney. Our findings suggest a potential strategy for treating DKD via mPGES-2 inhibition.
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  • 文章类型: Journal Article
    背景:多囊卵巢综合征(PCOS)是育龄妇女中最复杂的内分泌疾病之一。颗粒细胞(GCs)的异常增殖是PCOS的重要缘由。本研究旨在探讨脂肪酸结合蛋白5(FABP5)在多囊卵巢综合征(PCOS)患者颗粒细胞(GC)增殖中的作用。
    方法:FABP5基因,这与脂质代谢有关,通过对来自基因表达综合(GEO)数据库的GSE138518的基因表达谱的数据分析来鉴定。通过定量实时PCR(qRT-PCR)和蛋白质印迹法测量FABP5的表达水平。用细胞计数试剂盒-8(CCK-8)测定评价细胞增殖。Western印迹用于评估增殖标志物PCNA的表达,免疫荧光显微镜检测Ki67表达。此外,用尼罗红染色检测脂滴形成,qRT-PCR用于分析脂肪酸储存相关基因的表达。
    结果:我们发现FABP5在PCOS患者和PCOS小鼠的卵巢GCs中上调。FABP5敲低抑制人颗粒样肿瘤细胞系(KGN)的脂滴形成和增殖,而FABP5过表达显着增强了脂滴形成和KGN细胞增殖。此外,我们确定FABP5敲低通过抑制AKT磷酸化抑制PI3K-AKT信号传导,FABP5过表达通过促进AKT磷酸化激活PI3K-AKT信号传导.最后,我们使用PI3K-AKT信号通路抑制剂LY294002,发现FABP5过表达对KGN细胞增殖和脂滴形成的促进作用受到抑制。相比之下,PI3K-AKT信号通路激动剂SC79显著挽救了FABP5敲低引起的KGN细胞增殖抑制和脂滴形成。
    结论:FABP5通过激活PI3K-AKT信号促进活性脂肪酸合成和GC的过度增殖,提示FABP5在GCs中的异常高表达可能是PCOS治疗的新生物标志物或研究靶点。
    BACKGROUND: Polycystic ovary syndrome (PCOS) is one of the most complex endocrine disorders in women of reproductive age. Abnormal proliferation of granulosa cells (GCs) is an important cause of PCOS. This study aimed to explore the role of fatty acid-binding protein 5 (FABP5) in granulosa cell (GC) proliferation in polycystic ovary syndrome (PCOS) patients.
    METHODS: The FABP5 gene, which is related to lipid metabolism, was identified through data analysis of the gene expression profiles of GSE138518 from the Gene Expression Omnibus (GEO) database. The expression levels of FABP5 were measured by quantitative real-time PCR (qRT‒PCR) and western blotting. Cell proliferation was evaluated with a cell counting kit-8 (CCK-8) assay. Western blotting was used to assess the expression of the proliferation marker PCNA, and immunofluorescence microscopy was used to detect Ki67 expression. Moreover, lipid droplet formation was detected with Nile red staining, and qRT‒PCR was used to analyze fatty acid storage-related gene expression.
    RESULTS: We found that FABP5 was upregulated in ovarian GCs obtained from PCOS patients and PCOS mice. FABP5 knockdown suppressed lipid droplet formation and proliferation in a human granulosa-like tumor cell line (KGN), whereas FABP5 overexpression significantly enhanced lipid droplet formation and KGN cell proliferation. Moreover, we determined that FABP5 knockdown inhibited PI3K-AKT signaling by suppressing AKT phosphorylation and that FABP5 overexpression activated PI3K-AKT signaling by facilitating AKT phosphorylation. Finally, we used the PI3K-AKT signaling pathway inhibitor LY294002 and found that the facilitation of KGN cell proliferation and lipid droplet formation induced by FABP5 overexpression was inhibited. In contrast, the PI3K-AKT signaling pathway agonist SC79 significantly rescued the suppression of KGN cell proliferation and lipid droplet formation caused by FABP5 knockdown.
    CONCLUSIONS: FABP5 promotes active fatty acid synthesis and excessive proliferation of GCs by activating PI3K-AKT signaling, suggesting that abnormally high expression of FABP5 in GCs may be a novel biomarker or a research target for PCOS treatment.
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  • 文章类型: Journal Article
    对标准护理紫杉烷和雄激素剥夺疗法(ADT)的抗性导致全世界绝大多数前列腺癌(PC)死亡。我们开发了RapidCaP,一种自生的基因工程小鼠模型。它是由PTEN和p53的缺失驱动的,PTEN和p53是患有危及生命的疾病的PC患者中最常见的驱动事件。就像在人类ADT中一样,RapidCaP动物的手术去势总是导致疾病复发和转移性疾病负担的死亡。脂肪酸结合蛋白(FABP)是信号转导脂质载体的大家族。它们被认为是多种癌症类型的驱动因素。在这里,我们将来自RapidCaP(RCaP细胞)的原发性癌细胞的分析与大规模患者数据集相结合,以显示在10个FABP旁系同源物中,FABP5是PC相关目标。接下来,我们表明,与一组人PC细胞系相比,RCaP细胞对ADT和紫杉烷处理均不敏感。然而,它们对小分子FABP5抑制剂SBFI-103有共同的敏感性.我们表明SBFI-103具有良好的耐受性,并且可以在体内强烈消除RCaP肿瘤细胞。这为对抗无法治愈的PC提供了临床前平台,并表明FABP5在PTEN缺陷型PC中的重要作用。
    Resistance to standard of care taxane and androgen deprivation therapy (ADT) causes the vast majority of prostate cancer (PC) deaths worldwide. We have developed RapidCaP, an autochthonous genetically engineered mouse model of PC. It is driven by the loss of PTEN and p53, the most common driver events in PC patients with life-threatening diseases. As in human ADT, surgical castration of RapidCaP animals invariably results in disease relapse and death from the metastatic disease burden. Fatty Acid Binding Proteins (FABPs) are a large family of signaling lipid carriers. They have been suggested as drivers of multiple cancer types. Here we combine analysis of primary cancer cells from RapidCaP (RCaP cells) with large-scale patient datasets to show that among the 10 FABP paralogs, FABP5 is the PC-relevant target. Next, we show that RCaP cells are uniquely insensitive to both ADT and taxane treatment compared to a panel of human PC cell lines. Yet, they share an exquisite sensitivity to the small-molecule FABP5 inhibitor SBFI-103. We show that SBFI-103 is well tolerated and can strongly eliminate RCaP tumor cells in vivo. This provides a pre-clinical platform to fight incurable PC and suggests an important role for FABP5 in PTEN-deficient PC.
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  • 文章类型: Journal Article
    目的:由于宫颈癌(CC)转移,确诊患者预后较差。然而,转移性CC的分子机制和治疗方法仍然难以捉摸。
    方法:在本研究中,我们首先评估了白藜芦醇(RSV)对CC细胞迁移和转移的影响。通过基于活性的蛋白质谱分析(ABPP)方法,合成了RSV(RSV-P)光亲和探针,并鉴定了HeLa细胞中RSV的蛋白质靶标。根据目标信息和随后的体内和体外验证实验,我们最终阐明了RSV与其抗转移活性相对应的机制。
    结果:结果显示RSV浓度依赖性地抑制CC细胞的迁移和转移。通过使用RSV-P的ABPP方法将一系列蛋白质鉴定为RSV的靶标,其中FABP5基于TCGA数据库分析引起了我们的注意。随后的基因敲除和过表达实验证实,RSV直接与FABP5相互作用,抑制脂肪酸转运进入细胞核,从而抑制下游MMP2和MMP9表达,从而抑制CC转移。
    结论:我们的研究证实了FABP5在CC转移中的关键作用,并为转移性CC治疗性先导化合物的设计提供了重要的目标信息。
    OBJECTIVE: Because of cervical cancer (CC) metastasis, the prognosis of diagnosed patients is poor. However, the molecular mechanisms and therapeutic approach for metastatic CC remain elusive.
    METHODS: In this study, we first evaluated the effect of resveratrol (RSV) on CC cell migration and metastasis. Via an activity-based protein profiling (ABPP) approach, a photoaffinity probe of RSV (RSV-P) was synthesized, and the protein targets of RSV in HeLa cells were identified. Based on target information and subsequent in vivo and in vitro validation experiments, we finally elucidated the mechanism of RSV corresponding to its antimetastatic activity.
    RESULTS: The results showed that RSV concentration-dependently suppressed CC cell migration and metastasis. A list of proteins was identified as the targets of RSV, through the ABPP approach with RSV-P, among which fatty acid binding protein 5 (FABP5) attracted our attention based on The Cancer Genome Atlas (TCGA) database analysis. Subsequent knockout and overexpression experiments confirmed that RSV directly interacted with FABP5 to inhibit fatty acid transport into the nucleus, thereby suppressing downstream matrix metalloproteinase-2 (MMP2) and matrix metalloproteinase-9 (MMP9) expression, thus inhibiting CC metastasis.
    CONCLUSIONS: Our study confirmed the key role of FABP5 in CC metastasis and provided important target information for the design of therapeutic lead compounds for metastatic CC.
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  • 文章类型: Journal Article
    脂肪酸结合蛋白5(FABP5)和雄激素受体(AR)是前列腺癌的关键启动子。在本研究中,研究了敲除FABP5或AR基因对前列腺癌细胞恶性特征的影响,监测FABP5(或AR)-过氧化物酶体增殖物激活受体-γ(PPARγ)-血管内皮生长因子(VEGF)信号通路中某些关键蛋白的表达变化。获得的结果表明,FABP5或AR敲除(KO)导致细胞恶性特征的显着抑制,在某种程度上,通过破坏这个信号通路。此外,FABP5和AR能够相互作用以调节该途径,与FABP5控制显性AR剪接变体7(ARV7),AR,作为回报,调节FABP5的表达。RNA谱的比较表明,在亲本和FABP5-或AR-KO细胞之间存在许多差异表达基因(DEGs)。发现DEGs中六个最丰富的变化可归因于从对雄激素有反应到对雄激素无反应的转变,去势抵抗前列腺癌(CRPC)细胞。这些发现为CRPC细胞的复杂分子发病机制提供了新的见解。并且已经证明FABP5和AR之间的相互作用有助于前列腺癌细胞向雄激素非依赖性状态的转变。此外,基因富集分析显示,与DEGs相关的最高度富集的生物过程包括对脂肪酸的反应,胆固醇和甾醇的生物合成,以及脂质和脂肪酸的运输。由于FABP5或AR调控的这些通路在传导癌细胞进展的信号方面可能是至关重要的,靶向FABP5,AR及其相关途径,而不是单独的AR,可能为开发旨在抑制CRPC细胞恶性进展的治疗策略提供了新的途径。
    Fatty acid‑binding protein 5 (FABP5) and androgen receptor (AR) are critical promoters of prostate cancer. In the present study, the effects of knocking out the FABP5 or AR genes on malignant characteristics of prostate cancer cells were investigated, and changes in the expression of certain key proteins in the FABP5 (or AR)‑peroxisome proliferator activated receptor‑γ (PPARγ)‑vascular endothelial growth factor (VEGF) signaling pathway were monitored. The results obtained showed that FABP5‑ or AR‑knockout (KO) led to a marked suppression of the malignant characteristics of the cells, in part, through disrupting this signaling pathway. Moreover, FABP5 and AR are able to interact with each other to regulate this pathway, with FABP5 controlling the dominant AR splicing variant 7 (ARV7), and AR, in return, regulates the expression of FABP5. Comparisons of the RNA profiles revealed the existence of numerous differentially expressed genes (DEGs) comparing between the parental and the FABP5‑ or AR‑KO cells. The six most abundant changes in DEGs were found to be attributable to the transition from androgen‑responsive to androgen‑unresponsive, castration‑resistant prostate cancer (CRPC) cells. These findings have provided novel insights into the complex molecular pathogenesis of CRPC cells, and have demonstrated that interactions between FABP5 and AR contribute to the transition of prostate cancer cells to an androgen‑independent state. Moreover, gene enrichment analysis revealed that the most highly enriched biological processes associated with the DEGs included those responsive to fatty acids, cholesterol and sterol biosynthesis, as well as to lipid and fatty acid transportation. Since these pathways regulated by FABP5 or AR may be crucial in terms of transducing signals for cancer cell progression, targeting FABP5, AR and their associated pathways, rather than AR alone, may provide a new avenue for the development of therapeutic strategies geared towards suppressing the malignant progression to CRPC cells.
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  • 文章类型: Journal Article
    在这里,应用PC12细胞检测氧糖剥夺/再灌注(OGD/R)刺激下孕酮的影响。通过细胞计数试剂盒-8法评估PC12细胞的细胞增殖,和MDA的浓度,通过其相应的酶联免疫吸附测定试剂盒检查ROS和SOD。通过transwell和伤口愈合试验评估PC12细胞的侵袭和迁移特性,分别。通过蛋白质印迹和qPCR评估相关基因的表达模式。在OGD/R刺激下,孕酮处理可以提高PC12细胞的活力,降低MDA和ROS的水平,提高SOD的浓度。此外,孕酮处理可增强OGD/R条件下PC12细胞的侵袭和迁移能力,以及减少细胞凋亡和炎症。在OGD/R刺激下PC12细胞中FABP5表达显著增加,孕酮刺激后逆转。在OGD/R刺激下,si-FABP5处理后,孕酮对PC12细胞的保护作用增强。TLR4,p-P65NF-κB的蛋白水平,P65NF-κB在OGD/R诱导的PC12细胞中表达增加,黄体酮治疗后受到抑制。在OGD/R刺激下,孕酮通过靶向FABP5对PC12细胞发挥保护作用。
    Herein, PC12 cells were applied to detect the impact of progesterone under oxygen glucose deprivation/reperfusion (OGD/R) stimulation. The cell proliferation of PC12 cells was evaluated by cell counting kit-8 assay, and the concentrations of MDA, ROS and SOD were examined by their corresponding Enzyme Linked Immunosorbent Assay kits. The invasion and migration properties of PC12 cells were evaluated by transwell and wound healing assays, respectively. The expression patterns of related genes were evaluated by western blot and qPCR. Under OGD/R stimulation, progesterone treatment could elevate the viability of PC12 cells, reduce the levels of MDA and ROS, and elevate the concentration of SOD. Moreover, progesterone treatment could strengthen the invasion and migration abilities of PC12 cells under OGD/R condition, as well as decrease the apoptosis and inflammation. FABP5 expression was significantly increased in PC12 cells under OGD/R stimulation, which was reversed after progesterone stimulation. Under OGD/R stimulation, the protective effects of progesterone on PC12 cells were strengthened after si-FABP5 treatment. The protein levels of TLR4, p-P65 NF-κB, and P65 NF-κB in OGD/R-induced PC12 cells were increased, which were inhibited after progesterone treatment. Progesterone exerted protective effects on PC12 cells by targeting FABP5 under OGD/R stimulation.
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  • 文章类型: Journal Article
    背景:动脉粥样硬化(AS)是心血管疾病进展过程中的关键病理事件。它在动脉壁上表现出纤维脂肪病变,缺乏有效的治疗。N6-甲基腺苷(m6A)是真核生物RNA最常见的修饰形式,在调节心血管疾病的发生发展中起重要作用。然而,m6A修饰在AS中的作用尚不清楚。因此,在这项研究中,我们探讨了m6A修饰在AS中的转录组分布及其潜在机制。
    方法:甲基化定量试剂盒用于检测AS小鼠主动脉中的整体m6A水平。Western印迹用于分析甲基转移酶的蛋白质水平。甲基化RNA免疫沉淀与下一代测序(MeRIP-seq)和RNA测序(RNA-seq)用于获得AS小鼠主动脉中m6A亚甲基图的首次转录组范围分析,其次是生物信息学分析。qRT-PCR和MeRIP-qRT-PCR用于测量靶基因中的mRNA和m6A水平。
    结果:在AS小鼠的主动脉中,甲基转移酶METTL3的整体m6A和蛋白质水平显着增加。然而,脱甲基酶ALKBH5的蛋白水平显著降低。通过MeRIP-seq,我们获得了AS和对照小鼠的m6A甲基化图谱。总的来说,AS组检测到26,918个与13,744个基因相关的m6A峰,而对照组中检测到与13,283个基因相关的26,157个m6A峰。峰主要出现在靠近具有RRACH基序的终止密码子的编码序列(CDS)区域中。此外,功能富集分析表明,含m6A的基因在AS相关途径中显著富集。有趣的是,通过对MeRIP-seq和RNA-seq数据的整合分析,发现m6A甲基化丰度与基因表达水平呈负相关.在m6A修饰的基因中,低甲基化但上调(低上调)基因Fabp5可能是AS的潜在生物标志物。
    结论:我们的研究首次提供了全转录组m6A甲基化,以确定m6A修饰与AS进展之间的关联。本研究为进一步探讨AS的发病机制奠定了基础,为AS的治疗提供了新的方向。
    BACKGROUND: Atherosclerosis (AS) is a critical pathological event during the progression of cardiovascular diseases. It exhibits fibrofatty lesions on the arterial wall and lacks effective treatment. N6-methyladenosine (m6A) is the most common modification of eukaryotic RNA and plays an important role in regulating the development and progression of cardiovascular diseases. However, the role of m6A modification in AS remains largely unknown. Therefore, in this study, we explored the transcriptome distribution of m6A modification in AS and its potential mechanism.
    METHODS: Methylation Quantification Kit was used to detect the global m6A levels in the aorta of AS mice. Western blot was used to analyze the protein level of methyltransferases. Methylated RNA immunoprecipitation with next-generation sequencing (MeRIP-seq) and RNA sequencing (RNA-seq) were used to obtain the first transcriptome range analysis of the m6A methylene map in the aorta of AS mice, followed by bioinformatics analysis. qRT-PCR and MeRIP-qRT-PCR were used to measure the mRNA and m6A levels in target genes.
    RESULTS: The global m6A and protein levels of methyltransferase METTL3 were significantly increased in the aorta of AS mice. However, the protein level of demethylase ALKBH5 was significantly decreased. Through MeRIP-seq, we obtained m6A methylation maps in AS and control mice. In total, 26,918 m6A peaks associated with 13,744 genes were detected in AS group, whereas 26,157 m6A peaks associated with 13,283 genes were detected in the control group. Peaks mainly appeared in the coding sequence (CDS) regions close to the stop codon with the RRACH motif. Moreover, functional enrichment analysis demonstrated that m6A-containing genes were significantly enriched in AS-relevant pathways. Interestingly, a negative correlation between m6A methylation abundance and gene expression level was found through the integrated analysis of MeRIP-seq and RNA-seq data. Among the m6A-modified genes, a hypo-methylated but up-regulated (hypo-up) gene Fabp5 may be a potential biomarker of AS.
    CONCLUSIONS: Our study provides transcriptome-wide m6A methylation for the first time to determine the association between m6A modification and AS progression. Our study lays a foundation for further exploring the pathogenesis of AS and provides a new direction for the treatment of AS.
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