ExWAS

  • 文章类型: Journal Article
    老年人的认知障碍是一个日益严重的公共卫生挑战,环境化学物质可能是可改变的危险因素。尚未在环境范围内的关联框架中测试各种化学物质与认知的关联。在1999-2000年和2011-2014年美国国家健康和营养检查调查(NHANES)的横截面周期中,使用数字符号替代测试(DSST,得分0-117)在60岁及以上的参与者中。将血液或尿液中测量的环境化学物质的浓度进行log2转换和标准化。包括至少50%的测量值高于检测下限的化学品(n种化学品=147,n种类别=14)。我们使用平行调查加权多变量线性回归模型对化学浓度和认知之间的关联进行了测试,性别,种族/民族,教育,吸烟状况,鱼类消费,周期年,尿肌酐,和可替宁。至少有一项化学测量的参与者(n=4,982)的平均年龄为69.8岁,55.0%女性,78.2%非西班牙裔白人,77.0%至少受过高中教育。平均DSST评分为50.4(标准偏差(SD)=17.4)。在调整后的分析中,147次暴露中有5次与p值<0.01的DSST相关。值得注意的是,log2-scale可替宁浓度的SD增加与DSST评分降低2.71分相关(95%CI-3.69,-1.73).log2级尿钨浓度的SD增加与DSST评分降低1.34分相关(95%CI-2.11,-0.56)。接触环境化学品,特别是重金属和烟草烟雾,可能是老年人认知的可改变因素。
    Cognitive impairment among older adults is a growing public health challenge and environmental chemicals may be modifiable risk factors. A wide array of chemicals has not yet been tested for association with cognition in an environment-wide association framework. In the US National Health and Nutrition Examination Survey (NHANES) 1999-2000 and 2011-2014 cross-sectional cycles, cognition was assessed using the Digit Symbol Substitution Test (DSST, scores 0-117) among participants aged 60 years and older. Concentrations of environmental chemicals measured in blood or urine were log2 transformed and standardized. Chemicals with at least 50% of measures above the lower limit of detection were included (nchemicals=147, nclasses=14). We tested for associations between chemical concentrations and cognition using parallel survey-weighted multivariable linear regression models adjusted for age, sex, race/ethnicity, education, smoking status, fish consumption, cycle year, urinary creatinine, and cotinine. Participants with at least one chemical measurement (n=4,982) were mean age 69.8 years, 55.0% female, 78.2% non-Hispanic White, and 77.0% at least high school educated. The mean DSST score was 50.4 (standard deviation (SD)=17.4). In adjusted analyses, 5 of 147 exposures were associated with DSST at p-value<0.01. Notably, a SD increase in log2-scaled cotinine concentration was associated with 2.71 points lower DSST score (95% CI -3.69, -1.73). A SD increase in log2-scaled urinary tungsten concentration was associated with 1.34 points lower DSST score (95% CI -2.11, -0.56). Exposure to environmental chemicals, particularly heavy metals and tobacco smoke, may be modifiable factors for cognition among older adults.
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  • 文章类型: Journal Article
    背景:自闭症谱系障碍(ASD)是一种普遍存在的异质性神经发育障碍。风险归因于遗传和产前环境因素,尽管环境因子的特征不完全。
    方法:在早期自闭症风险纵向调查(EARLI)和婴儿学习早期体征(MARBLES)的自闭症风险标志物中,ASD儿童的兄弟姐妹的两个怀孕队列,使用电感耦合等离子体质谱法测量两个怀孕时间段(<28周和≥28周)的尿中金属浓度.三岁的时候,临床医生用DSM-5标准评估ASD。在广泛曝光的关联框架中,使用多变量对数二项回归,我们检查了每种金属与ASD状态的关联,在尿液取样时调整胎龄,儿童性,怀孕的年龄,种族/民族和教育。我们对这两个队列进行了荟萃分析。
    结果:在EARLI(n=170)中,有17%的儿童被诊断为ASD,44%被归类为非神经典型发育(非TD)。在MARBLES(n=231)中,21%被诊断为ASD,14%被归类为非TD。在第一和第二个三个月期间(<28周),镉浓度超过检测水平与ASD的1.69(1.08,2.64)倍风险相关,是非TD风险的1.29(0.95,1.75)倍。第一和第二三个月铯浓度的加倍与ASD的1.89(0.94,3.80)倍的风险几乎相关。妊娠晚期铯增加了一倍,ASD的风险增加了1.69倍(0.97,2.95)。
    结论:子宫内镉和铯含量升高,在怀孕期间收集的尿液中测量,与发展ASD的风险增加有关。
    BACKGROUND: Autism spectrum disorder (ASD) is a prevalent and heterogeneous neurodevelopmental disorder. Risk is attributed to genetic and prenatal environmental factors, though the environmental agents are incompletely characterized.
    METHODS: In Early Autism Risk Longitudinal Investigation (EARLI) and Markers of Autism Risk in Babies Learning Early Signs (MARBLES), two pregnancy cohorts of siblings of children with ASD, urinary metals concentrations during two pregnancy time periods (< 28 weeks and ≥ 28 weeks of gestation) were measured using inductively coupled plasma mass spectrometry. At age three, clinicians assessed ASD with DSM-5 criteria. In an exposure-wide association framework, using multivariable log binomial regression, we examined each metal for association with ASD status, adjusting for gestational age at urine sampling, child sex, age at pregnancy, race/ethnicity and education. We meta-analyzed across the two cohorts.
    RESULTS: In EARLI (n = 170) 17% of children were diagnosed with ASD, and 44% were classified as having non-neurotypical development (Non-TD). In MARBLES (n = 231), 21% were diagnosed with ASD, and 14% classified as Non-TD. During the first and second trimester period (< 28 weeks), having cadmium concentration over the level of detection was associated with 1.69 (1.08, 2.64) times higher risk of ASD, and 1.29 (0.95, 1.75)times higher risk of Non-TD. A doubling of first and second trimester cesium concentration was marginally associated with 1.89 (0.94, 3.80) times higher risk of ASD, and a doubling of third trimester cesium with 1.69 (0.97, 2.95) times higher risk of ASD.
    CONCLUSIONS: Exposure in utero to elevated levels of cadmium and cesium, as measured in urine collected during pregnancy, was associated with increased risk of developing ASD.
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  • 文章类型: Journal Article
    眼内压(IOP)是青光眼唯一可改变的危险因素,全球不可逆失明的主要原因。在这次审查中,我们总结了过去10年和2022年12月之前发表的IOP全基因组关联研究(GWASs)的发现.通过GWAS发现了超过190个与IOP相关的遗传基因座和候选基因,尽管这些研究大多是在欧洲和亚洲祖先的受试者中进行的。我们还讨论了如何将这些常见变异用于预测IOP和青光眼的多基因风险评分。并通过孟德尔随机化推断与其他性状和条件的因果关系。此外,我们总结了最近一项大规模全外显子组关联研究(ExWAS)的发现,该研究在40个新基因中发现了与IOP相关的罕见变异,其中六个是临床治疗的药物靶标或正在临床试验中进行评估。最后,我们讨论了未来IOP遗传研究的必要性,包括来自未研究人群的个体,包括拉丁美洲人和非洲人,为了充分表征IOP的遗传结构。
    Intraocular pressure (IOP) is the only modifiable risk factor for glaucoma, the leading cause of irreversible blindness worldwide. In this review, we summarize the findings of genome-wide association studies (GWASs) of IOP published in the past 10 years and prior to December 2022. Over 190 genetic loci and candidate genes associated with IOP have been uncovered through GWASs, although most of these studies were conducted in subjects of European and Asian ancestries. We also discuss how these common variants have been used to derive polygenic risk scores for predicting IOP and glaucoma, and to infer causal relationship with other traits and conditions through Mendelian randomization. Additionally, we summarize the findings from a recent large-scale exome-wide association study (ExWAS) that identified rare variants associated with IOP in 40 novel genes, six of which are drug targets for clinical treatment or are being evaluated in clinical trials. Finally, we discuss the need for future genetic studies of IOP to include individuals from understudied populations, including Latinos and Africans, in order to fully characterize the genetic architecture of IOP.
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  • 文章类型: Journal Article
    Metabolites are intermediates or end products of biochemical processes involved in both health and disease. Here, we take advantage of the well-characterized Cooperative Health Research in South Tyrol (CHRIS) study to perform an exome-wide association study (ExWAS) on absolute concentrations of 175 metabolites in 3294 individuals. To increase power, we imputed the identified variants into an additional 2211 genotyped individuals of CHRIS. In the resulting dataset of 5505 individuals, we identified 85 single-variant genetic associations, of which 39 have not been reported previously. Fifteen associations emerged at ten variants with >5-fold enrichment in CHRIS compared to non-Finnish Europeans reported in the gnomAD database. For example, the CHRIS-enriched ETFDH stop gain variant p.Trp286Ter (rs1235904433-hexanoylcarnitine) and the MCCC2 stop lost variant p.Ter564GlnextTer3 (rs751970792-carnitine) have been found in patients with glutaric acidemia type II and 3-methylcrotonylglycinuria, respectively, but the loci have not been associated with the respective metabolites in a genome-wide association study (GWAS) previously. We further identified three gene-trait associations, where multiple rare variants contribute to the signal. These results not only provide further evidence for previously described associations, but also describe novel genes and mechanisms for diseases and disease-related traits.
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