Engineered bacteria

工程细菌
  • 文章类型: Journal Article
    由于合成生物学的发展,基于工程化细菌的癌症治疗越来越被认为是一种有前途的治疗策略。其中,工程化细菌介导的光动力疗法(PDT)-免疫疗法在治疗效率方面比单一疗法显示出更大的优势和潜力.然而,光敏剂(PS)的不可持续再生和弱免疫应答限制了治疗效率。在这里,我们开发了一种工程化的基于细菌的递送系统,用于在癌症PDT免疫疗法中连续递送PSs和检查点抑制剂.将5-氨基乙酰丙酸(5-ALA)的生物合成途径导入大肠杆菌,生长10小时后产生172.19mg/L的上清液浓度。另一种菌株具有抗程序性细胞死亡配体1纳米抗体(抗PD-L1)的光可控释放。该系统表现出协同作用,PDT引发肿瘤细胞死亡,释放的肿瘤细胞片段刺激免疫,然后消除残留的肿瘤细胞。抑瘤率达到74.97%,活化的T细胞和炎症细胞因子部分得到加强。结果表明,工程化的基于细菌的协作系统可以依次递送治疗物质和检查点抑制剂,达到良好的治疗效果。本文将为肿瘤PDT-免疫治疗提供新的视角。
    Engineered bacteria-based cancer therapy has increasingly been considered to be a promising therapeutic strategy due to the development of synthetic biology. Wherein, engineering bacteria-mediated photodynamic therapy (PDT)-immunotherapy shows greater advantages and potential in treatment efficiency than monotherapy. However, the unsustainable regeneration of photosensitizers (PSs) and weak immune responses limit the therapeutic efficiency. Herein, we developed an engineered bacteria-based delivery system for sequential delivery of PSs and checkpoint inhibitors in cancer PDT-immunotherapy. The biosynthetic pathway of 5-aminolevulinic acid (5-ALA) was introduced into Escherichia coli, yielding a supernatant concentration of 172.19 mg/L after 10 h of growth. And another strain was endowed with the light-controllable releasement of anti-programmed cell death-ligand 1 nanobodies (anti-PD-L1). This system exhibited a collaborative effect, where PDT initiated tumor cell death and the released tumor cell fragments stimulated immunity, followed by the elimination of residual tumor cells. The tumor inhibition rate reached 74.97%, and the portion of activated T cells and inflammatory cytokines were reinforced. The results demonstrated that the engineered bacteria-based collaborative system could sequentially deliver therapeutic substance and checkpoint inhibitors, and achieve good therapeutic therapy. This paper will provide a new perspective for the cancer PDT-immunotherapy.
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  • 文章类型: Journal Article
    对不同核酸递送载体的需求,在最近生物技术突破的推动下,提供了持续提高效率的机会,安全,和交付能力。凭借其增强的安全性和大量的货物容量,细菌载体在各种应用中提供了巨大的潜力。在这次审查中,我们探索设计细菌用于核酸递送的方法,包括诸如工程减毒菌株的策略,裂解电路,和共轭机械。此外,我们探索开创性的技术,如操纵纳米粒子(NP)涂层和外膜囊泡(OMV),代表细菌载体工程的下一个前沿。我们预见到细菌介导的核酸传递的这些进步,通过将细菌致病机理与工程生物学技术相结合,作为核酸递送技术发展的关键一步。
    The demand for diverse nucleic acid delivery vectors, driven by recent biotechnological breakthroughs, offers opportunities for continuous improvements in efficiency, safety, and delivery capacity. With their enhanced safety and substantial cargo capacity, bacterial vectors offer significant potential across a variety of applications. In this review, we explore methods to engineer bacteria for nucleic acid delivery, including strategies such as engineering attenuated strains, lysis circuits, and conjugation machinery. Moreover, we explore pioneering techniques, such as manipulating nanoparticle (NP) coatings and outer membrane vesicles (OMVs), representing the next frontier in bacterial vector engineering. We foresee these advancements in bacteria-mediated nucleic acid delivery, through combining bacterial pathogenesis with engineering biology techniques, as a pivotal step forward in the evolution of nucleic acid delivery technologies.
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  • 文章类型: Journal Article
    近年来,由于发现放疗可以激活系统的抗肿瘤免疫反应,使临床上广泛应用于局部肿瘤治疗的放疗得到了新的发展。尽管如此,由于通过肿瘤微环境(TME)中的物理屏障防止免疫细胞浸润,内源性放射免疫作用仍然无法彻底消除肿瘤。在这里,开发了分泌纳豆激酶的工程沙门氏菌(VNPNKase)以协同调节TME的物理和免疫特性,从而增强结肠肿瘤的放射免疫治疗。全身给药后,兼性厌氧VNPNKase在肿瘤部位富集,持续分泌丰富的NKase降解纤连蛋白,疏通细胞外基质(ECM),并使癌症相关成纤维细胞(CAF)失活。VNPNKes-dregedTME促进CD103+树突状细胞(DC)的浸润,从而促进放疗后肿瘤相关抗原(TAA)的呈递,招募足够的CD8+T淋巴细胞特异性根除局部肿瘤。此外,放疗前对VNPNKase进行预处理,放大了手术切除效应,达到了长期的免疫记忆效果,预防肿瘤的转移和复发。我们的研究表明,这种利用工程细菌突破肿瘤物理屏障促进免疫细胞浸润的策略作为一种转化策略,有望提高放射免疫疗法治疗实体肿瘤的有效性。
    Radiotherapy widely applied for local tumor therapy in clinic has been recently reinvigorated by the discovery that radiotherapy could activate systematic antitumor immune response. Nonetheless, the endogenous radio-immune effect is still incapable of radical tumor elimination due to the prevention of immune cell infiltration by the physical barrier in tumor microenvironment (TME). Herein, an engineered Salmonella secreting nattokinase (VNPNKase) is developed to synergistically modulate the physical and immune characteristics of TME to enhance radio-immunotherapy of colon tumors. The facultative anaerobic VNPNKase enriches at the tumor site after systemic administration, continuously secreting abundant NKase to degrade fibronectin, dredge the extracellular matrix (ECM), and inactivate cancer-associated fibroblasts (CAFs). The VNPNKase- dredged TME facilitates the infiltration of CD103+ dendritic cells (DCs) and thus the presentation of tumor-associated antigens (TAAs) after radiotherapy, recruiting sufficient CD8+ T lymphocytes to specifically eradicate localized tumors. Moreover, the pre-treatment of VNPNKase before radiotherapy amplifies the abscopal effect and achieves a long-term immune memory effect, preventing the metastasis and recurrence of tumors. Our research suggests that this strategy using engineered bacteria to breach tumor physical barrier for promoting immune cell infiltration possesses great promise as a translational strategy to enhance the effectiveness of radio-immunotherapy in treating solid tumors.
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  • 文章类型: Journal Article
    基于细菌细胞的生命疗法在肿瘤治疗中的应用越来越受到重视。细菌细胞可以天然靶向肿瘤部位并激活先天免疫应答。细菌的内在优势归因于用于靶向向低氧环境递送的生物混合活性载体的开发。合理工程化的细菌细胞整合了各种功能,以增强肿瘤治疗并减少毒副作用。在这次审查中,讨论了细菌的抗肿瘤作用及其在多种抗肿瘤平台上作为活治疗剂的应用。首先介绍了用于癌症治疗的各种细菌,并证明了其抗肿瘤作用的机制以及免疫学作用。此外,本研究主要集中在转基因细菌生产的抗肿瘤药物作为活体传递系统来治疗癌症。然后在癌症治疗中讨论了活细菌细胞与功能性纳米材料的组合。简而言之,基于细菌细胞的生命疗法的合理设计突显了肿瘤治疗的快速发展,并指出了其在临床应用中的潜力。
    Living therapy based on bacterial cells has gained increasing attention for their applications in tumor treatments. Bacterial cells can naturally target to tumor sites and active the innate immunological responses. The intrinsic advantages of bacteria attribute to the development of biohybrid living carriers for targeting delivery toward hypoxic environments. The rationally engineered bacterial cells integrate various functions to enhance the tumor therapy and reduce toxic side effects. In this review, the antitumor effects of bacteria and their application are discussed as living therapeutic agents across multiple antitumor platforms. The various kinds of bacteria used for cancer therapy are first introduced and demonstrated the mechanism of antitumor effects as well as the immunological effects. Additionally, this study focused on the genetically modified bacteria for the production of antitumor agents as living delivery system to treat cancer. The combination of living bacterial cells with functional nanomaterials is then discussed in the cancer treatments. In brief, the rational design of living therapy based on bacterial cells highlighted a rapid development in tumor therapy and pointed out the potentials in clinical applications.
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  • 文章类型: Journal Article
    实体瘤病理学,以肿瘤微环境(TME)异常为特征,挑战治疗有效性。机械因素,包括增加的肿瘤硬度和肿瘤内力的积累,可以决定癌症治疗的成功,定义肿瘤的“机械病理学”配置文件。这些异常导致广泛的血管压迫,导致灌注不足和缺氧。灌注不足阻碍了药物输送,而缺氧会产生不利的TME,通过免疫抑制促进肿瘤进展,增强的转移潜力,耐药性,和混乱的血管生成。针对TME机械病理学的策略,如血管和基质正常化,在增强癌症治疗方面有希望,其中一些已经进入临床。使用抗血管生成剂可以实现正常化,机械治疗学,免疫检查点抑制剂,工程细菌疗法,节拍纳米医学,和超声检查。这里,我们回顾了纠正肿瘤机械病理学的方法,甚至导致临床前模型的治愈,讨论他们从长凳到床边的翻译,包括从肿瘤机械病理学中衍生出用于个性化治疗的生物标志物。
    Solid tumor pathology, characterized by abnormalities in the tumor microenvironment (TME), challenges therapeutic effectiveness. Mechanical factors, including increased tumor stiffness and accumulation of intratumoral forces, can determine the success of cancer treatments, defining the tumor\'s \"mechanopathology\" profile. These abnormalities cause extensive vascular compression, leading to hypoperfusion and hypoxia. Hypoperfusion hinders drug delivery, while hypoxia creates an unfavorable TME, promoting tumor progression through immunosuppression, heightened metastatic potential, drug resistance, and chaotic angiogenesis. Strategies targeting TME mechanopathology, such as vascular and stroma normalization, hold promise in enhancing cancer therapies with some already advancing to the clinic. Normalization can be achieved using anti-angiogenic agents, mechanotherapeutics, immune checkpoint inhibitors, engineered bacterial therapeutics, metronomic nanomedicine, and ultrasound sonopermeation. Here, we review the methods developed to rectify tumor mechanopathology, which have even led to cures in preclinical models, and discuss their bench-to-bedside translation, including the derivation of biomarkers from tumor mechanopathology for personalized therapy.
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  • 文章类型: Journal Article
    入侵性害虫可能会干扰并破坏性地重塑当地生态系统。小蜂巢甲虫(SHB),Aethinatumida,起源于非洲并扩展到美国,澳大利亚,欧洲,和亚洲。促进其快速全球扩张的关键因素是其能够依靠蜜蜂殖民地内外的多种食物生存。SHBs以环境中的各种植物水果和分泌物为食,同时寻找蜂箱。潜入蜂巢后,他们把饮食换成蜂蜜,花粉,还有蜜蜂幼虫.SHBs如何在如此广泛的食物中生存仍不清楚。在这项研究中,我们通过提供香蕉和蜂巢资源来模拟蜂巢的外部和内部阶段,并量化了通过饮食调节的SHB相关微生物。我们发现,以香蕉为食的SHB被编码更多碳水化合物活性酶和更高α多样性的微生物定殖,而不是以蜂巢产品为食的SHB或直接从蜂巢中收集的SHB群落。以香蕉为食的SHBs和从蜂巢中收集的SHBs表现出很高的共生体变异,β多样性表明。令人惊讶的是,我们在蜂箱中收集的SHB的胆量中发现了蜜蜂核心共生体Snodgrassellaalvi。确定S.alvi在SHB生物学中的作用,我们用带有基因标记的S.alvi培养物接种SHBs,表明这种共生体可能是SHBs的瞬态。相比之下,真菌Kodamaeaohmeri是SHBs的主要共生菌。基于饮食的微生物组变化可能在SHBs的传播和成功中发挥关键作用。
    Invasive pests may disturb and destructively reformat the local ecosystem. The small hive beetle (SHB), Aethina tumida, originated in Africa and has expanded to America, Australia, Europe, and Asia. A key factor facilitating its fast global expansion is its ability to subsist on diverse food inside and outside honey bee colonies. SHBs feed on various plant fruits and exudates in the environment while searching for bee hives. After sneaking into a bee hive, they switch their diet to honey, pollen, and bee larvae. How SHBs survive on such a broad range of food remains unclear. In this study, we simulated the outside and within hive stages by providing banana and hive resources and quantified the SHB associated microbes adjusted by the diet. We found that SHBs fed on bananas were colonized by microbes coding more carbohydrate-active enzymes and a higher alpha diversity than communities from SHBs feeding on hive products or those collected directly from bee hives. SHBs fed on bananas and those collected from the hive showed high symbiont variance, indicated by the beta diversity. Surprisingly, we found the honey bee core symbiont Snodgrassella alvi in the guts of SHBs collected in bee hives. To determine the role of S. alvi in SHB biology, we inoculated SHBs with a genetically tagged culture of S. alvi, showing that this symbiont is a likely transient of SHBs. In contrast, the fungus Kodamaea ohmeri is the primary commensal of SHBs. Diet-based microbiome shifts are likely to play a key role in the spread and success of SHBs.
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  • 文章类型: Journal Article
    炎症性肠病(IBD)是影响胃肠道的慢性和复发性病症。肠道菌群紊乱和胆汁酸(BA)代谢异常在IBD中显著,暗示了一种双向关系。具体来说,肠道微生物群的多样性影响BA组成,而改变的BA谱可以破坏微生物群。IBD患者通常表现出增加的初级胆汁酸和降低的次级胆汁酸浓度,这是由于BA代谢所必需的细菌群体减少。这种失衡激活了BA受体,破坏肠道完整性和免疫功能。因此,靶向微生物群-BA轴可以纠正这些干扰,提供IBD的症状缓解。这里,综述了肠道菌群与胆汁酸(BA)之间的相互作用,特别关注肠道菌群在介导胆汁酸生物转化中的作用,以及肠道微生物群-BA轴对IBD病理学的贡献,以揭示IBD的潜在新治疗途径。
    Inflammatory bowel disease (IBD) is a chronic and recurrent condition affecting the gastrointestinal tract. Disturbed gut microbiota and abnormal bile acid (BA) metabolism are notable in IBD, suggesting a bidirectional relationship. Specifically, the diversity of the gut microbiota influences BA composition, whereas altered BA profiles can disrupt the microbiota. IBD patients often exhibit increased primary bile acid and reduced secondary bile acid concentrations due to a diminished bacteria population essential for BA metabolism. This imbalance activates BA receptors, undermining intestinal integrity and immune function. Consequently, targeting the microbiota-BA axis may rectify these disturbances, offering symptomatic relief in IBD. Here, the interplay between gut microbiota and bile acids (BAs) is reviewed, with a particular focus on the role of gut microbiota in mediating bile acid biotransformation, and contributions of the gut microbiota-BA axis to IBD pathology to unveil potential novel therapeutic avenues for IBD.
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  • 文章类型: Journal Article
    基于细菌的癌症治疗领域,重点是细菌流行所起的关键作用,特别是在肿瘤中,控制癌症治疗的潜在靶点,在过去的几十年里有了巨大的增长。在这次审查中,我们讨论,第一次,全球癌症形势和在癌症治疗中使用细菌的时间表。我们还探讨了跨学科合作如何促进基于细菌的癌症疗法的发展。此外,我们解决了基于细菌的癌症治疗在临床试验中被接受所需要克服的挑战,以及该领域的最新进展.通过基于细菌的癌症治疗开发的突破性技术为癌症的各种疗法开辟了新的治疗策略。
    The field of bacteria-based cancer therapy, which focuses on the key role played by the prevalence of bacteria, specifically in tumors, in controlling potential targets for cancer therapy, has grown enormously over the past few decades. In this review, we discuss, for the first time, the global cancer situation and the timeline for using bacteria in cancer therapy. We also explore how interdisciplinary collaboration has contributed to the evolution of bacteria-based cancer therapies. Additionally, we address the challenges that need to be overcome for bacteria-based cancer therapy to be accepted in clinical trials and the latest advancements in the field. The groundbreaking technologies developed through bacteria-based cancer therapy have opened up new therapeutic strategies for a wide range of therapeutics in cancer.
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  • 文章类型: Journal Article
    目前,有许多不同的治疗方法可用于炎症性肠病(IBD),包括工程活细菌疗法。然而,这些研究大多集中在使用单个细菌生产单一的治疗药物,这可能会导致无效。使用双重药物可以增强治疗效果。然而,在一个细菌底盘中表达多种治疗药物会增加细菌的负担,并阻碍良好的分泌和表达。因此,双重细菌,双药物表达系统允许引入两种益生菌底盘,并增强治疗和益生菌作用。在这项研究中,我们构建了一个双重细菌系统,以同时中和促炎因子并增强抗炎途径。这些用于治疗的细菌由大肠杆菌Nissle1917组成,分别表达和分泌抗TNF-α纳米抗体和IL-10。口服基因工程细菌导致结肠中炎性细胞浸润减少和促炎细胞因子水平降低。此外,工程菌的给药没有明显加重肠道纤维化,对肠道微生物有调节作用。该系统提出了一种双工程细菌药物联合治疗炎症性肠病的治疗方法,为干预和治疗IBD提供了新的途径。关键词:•本文讨论了使用双重工程细菌对IBD的影响•工程细菌在IBD临床治疗中的前景。
    Currently, there are many different therapies available for inflammatory bowel disease (IBD), including engineered live bacterial therapeutics. However, most of these studies focus on producing a single therapeutic drug using individual bacteria, which may cause inefficacy. The use of dual drugs can enhance therapeutic effects. However, expressing multiple therapeutic drugs in one bacterial chassis increases the burden on the bacterium and hinders good secretion and expression. Therefore, a dual-bacterial, dual-drug expression system allows for the introduction of two probiotic chassis and enhances both therapeutic and probiotic effects. In this study, we constructed a dual bacterial system to simultaneously neutralize pro-inflammatory factors and enhance the anti-inflammatory pathway. These bacteria for therapy consist of Escherichia coli Nissle 1917 that expressed and secreted anti-TNF-α nanobody and IL-10, respectively. The oral administration of genetically engineered bacteria led to a decrease in inflammatory cell infiltration in colon and a reduction in the levels of pro-inflammatory cytokines. Additionally, the administration of engineered bacteria did not markedly aggravate gut fibrosis and had a moderating effect on intestinal microbes. This system proposes a dual-engineered bacterial drug combination treatment therapy for inflammatory bowel disease, which provides a new approach to intervene and treat IBD. KEY POINTS: • The paper discusses the effects of using dual engineered bacteria on IBD • Prospects of engineered bacteria in the clinical treatment of IBD.
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  • 文章类型: Journal Article
    迫切需要肝细胞癌(HCC)的新治疗方式,鉴于缺乏特异性,严重的副作用,和单一化疗耐药。工程化细菌可以靶向并在肿瘤组织中积累,诱导免疫反应,充当药物输送工具。然而,传统的细菌疗法有局限性,如药物装载能力和货物释放困难,导致治疗结果不足。合成生物技术可以提高基于细菌的递送系统的精度和功效。这使得治疗有效负载在体内的选择性释放成为可能。
    在这项研究中,我们构建了一种非致病性大肠杆菌(E.大肠杆菌)与同步裂解回路作为药物/基因递送载体和原位(乙型肝炎表面抗原)Ag(ASEC)生产者。将负载有质粒编码的人硫酸酯酶1(hsulf-1)酶(PNP)的聚乙二醇(CHO-PEG2000-CHO)-聚(乙烯亚胺)(PEI25k)-柠康酸酐(CA)-多柔比星(DOX)纳米颗粒锚定在ASEC(ASEC@PNP)的表面。合成并表征了复合材料。在HepG2细胞系和小鼠皮下肿瘤模型中测试了ASEC@PNP的体外和体内抗肿瘤作用。
    结果表明,静脉注射荷瘤小鼠后,ASEC可以主动靶向和定植肿瘤部位。裂解基因实现Ag的爆发和集中释放显着增加了细胞因子的分泌和肿瘤内CD4/CD8T细胞的浸润,引发了特定的免疫反应。同时,PNP系统将hsulf-1和DOX释放到肿瘤细胞中,从而导致快速的肿瘤消退和预防转移。
    新型药物递送系统在体内显着抑制HCC,副作用减少,表明临床肝癌治疗的潜在策略。
    UNASSIGNED: New treatment modalities for hepatocellular carcinoma (HCC) are desperately critically needed, given the lack of specificity, severe side effects, and drug resistance with single chemotherapy. Engineered bacteria can target and accumulate in tumor tissues, induce an immune response, and act as drug delivery vehicles. However, conventional bacterial therapy has limitations, such as drug loading capacity and difficult cargo release, resulting in inadequate therapeutic outcomes. Synthetic biotechnology can enhance the precision and efficacy of bacteria-based delivery systems. This enables the selective release of therapeutic payloads in vivo.
    UNASSIGNED: In this study, we constructed a non-pathogenic Escherichia coli (E. coli) with a synchronized lysis circuit as both a drug/gene delivery vehicle and an in-situ (hepatitis B surface antigen) Ag (ASEc) producer. Polyethylene glycol (CHO-PEG2000-CHO)-poly(ethyleneimine) (PEI25k)-citraconic anhydride (CA)-doxorubicin (DOX) nanoparticles loaded with plasmid encoded human sulfatase 1 (hsulf-1) enzyme (PNPs) were anchored on the surface of ASEc (ASEc@PNPs). The composites were synthesized and characterized. The in vitro and in vivo anti-tumor effect of ASEc@PNPs was tested in HepG2 cell lines and a mouse subcutaneous tumor model.
    UNASSIGNED: The results demonstrated that upon intravenous injection into tumor-bearing mice, ASEc can actively target and colonise tumor sites. The lytic genes to achieve blast and concentrated release of Ag significantly increased cytokine secretion and the intratumoral infiltration of CD4/CD8+T cells, initiated a specific immune response. Simultaneously, the PNPs system releases hsulf-1 and DOX into the tumor cell resulting in rapid tumor regression and metastasis prevention.
    UNASSIGNED: The novel drug delivery system significantly suppressed HCC in vivo with reduced side effects, indicating a potential strategy for clinical HCC therapy.
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