Early disease detection

  • 文章类型: Journal Article
    背景:辣椒疫霉疫病是辣椒生长过程中的一种破坏性疾病,显著影响其产量和品质。准确,快速,辣椒疫霉的无损早期检测对辣椒生产管理具有重要意义。这项研究调查了使用多光谱成像结合机器学习检测辣椒疫病的可能性。辣椒分为两组:一组接种疫霉疫病,另一个不处理作为对照。在接种前0小时和接种后48、60、72和84小时收集多光谱图像。利用多光谱成像系统的支持软件对19个波长的光谱特征进行提取,使用灰度共生矩阵(GLCM)和局部二进制模式(LBP)提取纹理特征。主成分分析(PCA),连续投影算法(SPA),和遗传算法(GA)用于从提取的光谱和纹理特征中进行特征选择。基于有效的单光谱特征和显著的光谱纹理融合特征建立了两种分类模型:偏最小二乘判别分析(PLS_DA)和一维卷积神经网络(1D-CNN)。基于PCA从光谱数据中提取的五个主成分(PC)系数,构建了二维卷积神经网络(2D-CNN),加权,并与19通道多光谱图像相加以创建新的PC图像。
    结果:结果表明,使用PCA进行特征选择的模型表现出相对稳定的分类性能。基于单光谱特征的PLS-DA和1D-CNN的准确率分别为82.6%和83.3%,分别,在48h标记。相比之下,基于光谱纹理融合的PLS-DA和1D-CNN的准确率分别达到85.9%和91.3%,分别,在相同的48h标记。基于5张PC图像的2D-CNN的准确率为82%。
    结论:研究表明,接种后48小时(可见症状前36小时)可以检测到疫霉感染。本研究为辣椒疫霉疫病的早期检测提供了一种有效的方法。
    BACKGROUND: Pepper Phytophthora blight is a devastating disease during the growth process of peppers, significantly affecting their yield and quality. Accurate, rapid, and non-destructive early detection of pepper Phytophthora blight is of great importance for pepper production management. This study investigated the possibility of using multispectral imaging combined with machine learning to detect Phytophthora blight in peppers. Peppers were divided into two groups: one group was inoculated with Phytophthora blight, and the other was left untreated as a control. Multispectral images were collected at 0-h samples before inoculation and at 48, 60, 72, and 84 h after inoculation. The supporting software of the multispectral imaging system was used to extract spectral features from 19 wavelengths, and textural features were extracted using a gray-level co-occurrence matrix (GLCM) and a local binary pattern (LBP). The principal component analysis (PCA), successive projection algorithm (SPA), and genetic algorithm (GA) were used for feature selection from the extracted spectral and textural features. Two classification models were established based on effective single spectral features and significant spectral textural fusion features: a partial least squares discriminant analysis (PLS_DA) and one-dimensional convolutional neural network (1D-CNN). A two-dimensional convolutional neural network (2D-CNN) was constructed based on five principal component (PC) coefficients extracted from the spectral data using PCA, weighted, and summed with 19-channel multispectral images to create new PC images.
    RESULTS: The results indicated that the models using PCA for feature selection exhibit relatively stable classification performance. The accuracy of PLS-DA and 1D-CNN based on single spectral features is 82.6% and 83.3%, respectively, at the 48h mark. In contrast, the accuracy of PLS-DA and 1D-CNN based on spectral texture fusion reached 85.9% and 91.3%, respectively, at the same 48h mark. The accuracy of the 2D-CNN based on 5 PC images is 82%.
    CONCLUSIONS: The research indicates that Phytophthora blight infection can be detected 48 h after inoculation (36 h before visible symptoms). This study provides an effective method for the early detection of Phytophthora blight in peppers.
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  • 文章类型: Journal Article
    背景:有效检测囊性纤维化(CF)中的早期肺部疾病对于理解早期发病机制和评估早期干预策略至关重要。我们旨在比较几种拟议的敏感功能工具在学龄儿童中检测由CT结构疾病定义的早期CF肺病的能力。
    方法:50名CF受试者(平均值±SD11.2±3.5y,范围5-18y)患有早期肺部疾病(FEV1≥70%预测:95.7±11.8%)进行了肺活量测定,多次呼气冲洗(MBW,包括截留气体评估),示波法,心肺运动测试(CPET)和同时肺活量计定向低剂量CT成像。使用经过充分评估的完全定量软件对支气管扩张和空气滞留(AT)进行CT数据分析。
    结果:24%和58%的患者发生CT支气管扩张和AT,分别。在功能工具中,MBW检测到的异常率最高:Scond82%,MBWTGRV78%,LCI74%,MBWTGIC68%和Sacin51%。CPETVO2peak检测到的异常率(9%)略高于基于肺活量测定的FEV1(2%)。对于示波法,AX(14%)的表现优于Rrs(2%),而Xrs和R5-19未能检测到任何异常。LCI和Scond与支气管扩张(r=0.55-0.64,p<0.001)和AT(r=0.73-0.74,p<0.001)相关。在92%的受试者中可检测到MBW评估的截留气体,在74%的受试者中与CT评估的AT一致。
    结论:早期CF肺疾病会出现明显的结构和功能缺陷,由CT和MBW检测到。对于MBW,额外的实用程序,除了LCI提供的之外,还建议用于Scond和MBW评估的气体捕集。我们的研究加强了这些工具的互补性,以及在这种情况下常规示波法和CPET的有限效用。
    BACKGROUND: Effective detection of early lung disease in cystic fibrosis (CF) is critical to understanding early pathogenesis and evaluating early intervention strategies. We aimed to compare ability of several proposed sensitive functional tools to detect early CF lung disease as defined by CT structural disease in school aged children.
    METHODS: 50 CF subjects (mean±SD 11.2 ± 3.5y, range 5-18y) with early lung disease (FEV1≥70 % predicted: 95.7 ± 11.8 %) performed spirometry, Multiple breath washout (MBW, including trapped gas assessment), oscillometry, cardiopulmonary exercise testing (CPET) and simultaneous spirometer-directed low-dose CT imaging. CT data were analysed using well-evaluated fully quantitative software for bronchiectasis and air trapping (AT).
    RESULTS: CT bronchiectasis and AT occurred in 24 % and 58 % of patients, respectively. Of the functional tools, MBW detected the highest rates of abnormality: Scond 82 %, MBWTG RV 78 %, LCI 74 %, MBWTG IC 68 % and Sacin 51 %. CPET VO2peak detected slightly higher rates of abnormality (9 %) than spirometry-based FEV1 (2 %). For oscillometry AX (14 %) performed better than Rrs (2 %) whereas Xrs and R5-19 failed to detect any abnormality. LCI and Scond correlated with bronchiectasis (r = 0.55-0.64, p < 0.001) and AT (r = 0.73-0.74, p < 0.001). MBW-assessed trapped gas was detectable in 92 % of subjects and concordant with CT-assessed AT in 74 %.
    CONCLUSIONS: Significant structural and functional deficits occur in early CF lung disease, as detected by CT and MBW. For MBW, additional utility, beyond that offered by LCI, was suggested for Scond and MBW-assessed gas trapping. Our study reinforces the complementary nature of these tools and the limited utility of conventional oscillometry and CPET in this setting.
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  • 文章类型: Journal Article
    为了评估患者用户在多大程度上报告了五种严重/急性疾病的症状,需要对基于AI的虚拟分诊(VT)引擎进行紧急护理,他们无意获得这种护理。其敏锐度感知与危及生命症状的实际风险错位或脱钩。
    对16个月内进行的3,022,882例室性心动过速访谈的数据集进行了评估,以量化和描述患者使用者报告的五种潜在威胁生命的疾病的症状,这些疾病的分诊前医疗意图不是寻求紧急护理。包括心肌梗塞,中风,哮喘恶化,肺炎,和肺栓塞.
    获得了12,101例室性心动过速患者-用户访谈的医疗意向数据。在所有五个条件下,38.5%的VT表明需要紧急护理的个体没有预诊意图咨询医生。此外,61.5%的人可能会咨询医生,但无意寻求紧急医疗护理。调整13%室性心动过速安全超诊/转诊后,33.5%的患者使用者没有寻求专业护理的意图,53.5%无意寻求紧急护理。
    基于AI的室性心动过速可以通过吸引那些认为自己的症状并不严重的患者,为早期发现和治疗严重演变的病理提供工具,为了加快患者对风险有误解的危及生命的情况下的护理转诊和交付,或者犹豫不决,导致护理延迟。下一步将是临床确认,当患者护理意图与紧急护理需求脱钩时,室性心动过速可以影响患者行为以加速护理参与和/或急诊护理调度和治疗以改善临床结果。
    UNASSIGNED: To evaluate the extent to which patient-users reporting symptoms of five severe/acute conditions requiring emergency care to an AI-based virtual triage (VT) engine had no intention to get such care, and whose acuity perception was misaligned or decoupled from actual risk of life-threatening symptoms.
    UNASSIGNED: A dataset of 3,022,882 VT interviews conducted over 16 months was evaluated to quantify and describe patient-users reporting symptoms of five potentially life-threatening conditions whose pre-triage healthcare intention was other than seeking urgent care, including myocardial infarction, stroke, asthma exacerbation, pneumonia, and pulmonary embolism.
    UNASSIGNED: Healthcare intent data was obtained for 12,101 VT patient-user interviews. Across all five conditions a weighted mean of 38.5% of individuals whose VT indicated a condition requiring emergency care had no pre-triage intent to consult a physician. Furthermore, 61.5% intending to possibly consult a physician had no intent to seek emergency medical care. After adjustment for 13% VT safety over-triage/referral to ED, a weighted mean of 33.5% of patient-users had no intent to seek professional care, and 53.5% had no intent to seek emergency care.
    UNASSIGNED: AI-based VT may offer a vehicle for early detection and care acuity alignment of severe evolving pathology by engaging patients who believe their symptoms are not serious, and for accelerating care referral and delivery for life-threatening conditions where patient misunderstanding of risk, or indecision, causes care delay. A next step will be clinical confirmation that when decoupling of patient care intent from emergent care need occurs, VT can influence patient behavior to accelerate care engagement and/or emergency care dispatch and treatment to improve clinical outcomes.
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  • 文章类型: Journal Article
    生物光子学,将生物学与光子学融合在一起的跨学科领域,通过提供创新的诊断技术和工具改变了牙科,治疗,和研究。本概述探讨了生物光子学在牙科中的应用和益处,包括早期疾病检测,程序的精确性,修复性牙科评估,实时监控,牙齿美白。我们讨论了生物光子学如何改善患者护理以及个性化治疗未来发展的潜力。靶向治疗,增强成像,和疼痛管理。Biophotonics承诺继续彻底改变口腔保健,导致全球更好的患者结果。
    Biophotonics, an interdisciplinary field merging biology with photonics, has transformed dentistry by offering innovative techniques and tools for diagnosis, treatment, and research. This overview explores the applications and benefits of biophotonics in dentistry, including early disease detection, precision in procedures, restorative dentistry assessment, real-time monitoring, and teeth whitening. We discuss how biophotonics improves patient care and the potential for future developments in personalized treatment, targeted therapy, enhanced imaging, and pain management. Biophotonics promises to continue revolutionizing oral healthcare, leading to better patient outcomes worldwide.
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  • 文章类型: Journal Article
    目前的医疗实践反应更灵敏,而不是积极主动,尽管早期疾病检测的价值得到了广泛认可,包括提高医疗质量和降低医疗费用。早期疾病检测的基石之一是临床可操作的预测,预期预测是准确的,稳定,实时和可解释。作为一个例子,我们使用了卒中相关性肺炎(SAP),建立基于变压器编码器的模型,实时分析高度异构的电子健康记录。该模型在独立测试集上被证明是准确和稳定的。此外,它对98.6%的SAP患者发出了至少一个警告,平均而言,它的警报早于医生诊断2.71天。我们应用集成梯度来收集模型的推理过程。补充风险评分,该模型突出了患者轨迹上的关键历史事件,被证明具有很高的临床相关性。
    The current medical practice is more responsive rather than proactive, despite the widely recognized value of early disease detection, including improving the quality of care and reducing medical costs. One of the cornerstones of early disease detection is clinically actionable predictions, where predictions are expected to be accurate, stable, real-time and interpretable. As an example, we used stroke-associated pneumonia (SAP), setting up a transformer-encoder-based model that analyzes highly heterogeneous electronic health records in real-time. The model was proven accurate and stable on an independent test set. In addition, it issued at least one warning for 98.6 % of SAP patients, and on average, its alerts were ahead of physician diagnoses by 2.71 days. We applied Integrated Gradient to glean the model\'s reasoning process. Supplementing the risk scores, the model highlighted critical historical events on patients\' trajectories, which were shown to have high clinical relevance.
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  • 文章类型: Journal Article
    背景:苏格兰的社区验光师对所有人进行了定期的免费即时眼科检查,超过15年。眼睛检查包括视网膜成像,但图像存储是碎片化的,不用于研究。苏格兰协作验光-眼科网络电子研究项目旨在收集这些图像,并创建一个与常规收集的医疗保健数据链接的存储库。支持开发症状前诊断工具。
    方法:由于图像记录通常与患者记录分开,并且包含最少的患者信息,我们开发了一种有效的匹配算法,使用确定性和概率步骤的组合,将误报的风险降至最低,促进国家健康记录的联系。我们访问了两个实践,并评估了其图像设备和实践管理系统中包含的数据。探索了实践活动,以了解数据收集过程的背景。迭代地,我们测试了一系列匹配规则,与人工匹配相比,这些规则捕获了很高比例的真阳性记录.通过在三个进一步的实践中针对自动化步骤测试手动匹配来验证该方法。
    结果:与手动匹配相比,一系列确定性规则成功匹配了三种测试实践中95%的记录。在算法中添加两个概率规则成功匹配了99%的记录。
    结论:社区获取的视网膜图像的潜在价值只有与中央掌握的医疗保健数据相关联才能得到利用。尽管验光实践中的系统之间缺乏互操作性,并且唯一标识符的使用不一致,使用健壮的数据链接是可能的,几乎完全自动化的过程。
    BACKGROUND: Community optometrists in Scotland have performed regular free-at-point-of-care eye examinations for all, for over 15 years. Eye examinations include retinal imaging but image storage is fragmented and they are not used for research. The Scottish Collaborative Optometry-Ophthalmology Network e-research project aimed to collect these images and create a repository linked to routinely collected healthcare data, supporting the development of pre-symptomatic diagnostic tools.
    METHODS: As the image record was usually separate from the patient record and contained minimal patient information, we developed an efficient matching algorithm using a combination of deterministic and probabilistic steps which minimised the risk of false positives, to facilitate national health record linkage. We visited two practices and assessed the data contained in their image device and Practice Management Systems. Practice activities were explored to understand the context of data collection processes. Iteratively, we tested a series of matching rules which captured a high proportion of true positive records compared to manual matches. The approach was validated by testing manual matching against automated steps in three further practices.
    RESULTS: A sequence of deterministic rules successfully matched 95% of records in the three test practices compared to manual matching. Adding two probabilistic rules to the algorithm successfully matched 99% of records.
    CONCLUSIONS: The potential value of community-acquired retinal images can be harnessed only if they are linked to centrally-held healthcare care data. Despite the lack of interoperability between systems within optometry practices and inconsistent use of unique identifiers, data linkage is possible using robust, almost entirely automated processes.
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  • 文章类型: Editorial
    本社论提供了Sensors杂志上发表的研究和评论文章的摘要和概述,第21卷(2021年),22(2022)和23(2023),在生物医学特刊“用于无创早期疾病检测的便携式电子鼻设备”中,专注于最近的传感器,生物传感器,以及为人类和动物疾病的非侵入性早期检测和诊断开发的临床仪器。本特刊上发表的十篇文章提供了与最近的电子鼻(电子鼻)和相关的挥发性有机化合物(VOC)检测技术相关的新信息,这些技术旨在提高诊断方法的有效性和效率,以便在症状发展之前进行早期疾病检测。出于审查目的,总结的文章分为三个大类或主题领域,包括兽医-野生动物病理学,人体临床病理学,以及检测膳食对VOC排放的影响。这些指定的类别用于定义专门用于相关研究的部分标题,具有基于正在研究的特定疾病或分析中使用的分析仪器类型的共性。
    This Editorial provides summaries and an overview of research and review articles published in the Sensors journal, volumes 21 (2021), 22 (2022), and 23 (2023), within the biomedical Special Issue \"Portable Electronic-Nose Devices for Noninvasive Early Disease Detection\", which focused on recent sensors, biosensors, and clinical instruments developed for noninvasive early detection and diagnosis of human and animal diseases. The ten articles published in this Special Issue provide new information associated with recent electronic-nose (e-nose) and related volatile organic compound (VOC)-detection technologies developed to improve the effectiveness and efficiency of diagnostic methodologies for early disease detection prior to symptom development. For review purposes, the summarized articles were placed into three broad groupings or topic areas, including veterinary-wildlife pathology, human clinical pathology, and the detection of dietary effects on VOC emissions. These specified categories were used to define sectional headings devoted to related research studies with a commonality based on a particular disease being investigated or type of analytical instrument used in analyses.
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  • 文章类型: Journal Article
    在这项工作中,我们提出了一个新的数据集组成的光谱数据和图像的木薯作物有和没有疾病。连同数据集的描述,我们描述了在受控环境和不控制害虫的空地中收集此类数据的协议。过去,通过分析使用智能手机相机拍摄的植物图像来进行作物疾病诊断。然而,在某些情况下,疾病症状不明显。此外,对于一些木薯病,一旦症状出现在植物的地上部分,作为植物可食用部分的根已经完全被破坏。收集这种多模态作物病害的目的是早期干预,遵循以下假设:可以使用光谱信息检测到没有可见症状的患病作物。我们收集了从感染两种常见木薯病的叶片捕获的可见和近红外光谱;木薯棕色条纹病和木薯花叶病,以及健康的植物。一起,我们还捕获了与光谱信息相对应的叶片图像数据。在我们的实验中,生化数据被收集并作为基础事实。最后,农业专家提供了每株植物叶片的疾病评分,从1到5,1代表健康,5代表严重疾病。温室和露天场的疾病监测和数据收集过程连续19周和15周,分别,直到人眼明显看到疾病症状。
    In this work, we present a novel dataset composed of spectral data and images of cassava crops with and without diseases. Together with the description of the dataset, we describe the protocol to collect such data in a controlled environment and in an open field where pests are not controlled. Crop disease diagnosis has been done in the past through the analysis of plant images taken with a smartphone camera. However, in some cases, disease symptoms are not visible. Furthermore, for some cassava diseases, once symptoms have manifested on the aerial part of the plant, the root which is the edible part of the plant has been totally destroyed. The goal of collecting this multimodality of the crop disease is early intervention, following the hypothesis that diseased crops without visible symptoms can be detected using spectral information. We collected visible and near-infrared spectra captured from leaves infected with two common cassava diseases namely; Cassava Brown Streak Disease and Cassava Mosaic Disease, as well as from healthy plants. Together, we also captured leaf imagery data that corresponds to the spectral information. In our experiments, biochemical data is collected and taken as the ground truth. Finally, agricultural experts provided a disease score per plant leaf from 1 to 5, 1 representing healthy and 5 severely diseased. The process of disease monitoring and data collection took 19 and 15 consecutive weeks for screenhouse and open field, respectively, until disease symptoms were visibly seen by the human eye.
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  • 文章类型: Journal Article
    蛋白质冠组成和对差异表达蛋白质的精确生理理解是鉴定疾病生物标志物的关键。在这份报告中,我们提出了一个独特的定量蛋白质组学的分子细胞信号差异表达的蛋白质,形成在碳化铁纳米颗粒(NP)。高效液相色谱/电喷雾电离结合离子阱质量分析仪(HPLC/ESI-Orbitrap)和MASCOT有助于量化142种差异表达的蛋白质。在这些蛋白质中,与对照相比,有104种蛋白质表现出上调的行为,38种蛋白质表达下调,而48、32和24个蛋白质被上调,8、9和21个蛋白质被下调CW(使用未修饰的NP进行对照),CY(使用修改的NP控制)和WY(修改和未修改的NP),分别。这些蛋白质代表它们的规律性被进一步分类,局部性,使用基因本体论(GO)的分子功能和分子质量。STRING分析用于靶向特定范围的蛋白质,这些蛋白质涉及不同种类的结合官能团的代谢途径和分子加工。比如RNA,DNA,ATP,ADP,GTP,国内生产总值和钙离子结合。因此,这项研究将有助于开发使用蛋白质指纹图谱鉴定早期疾病中潜在生物标志物的有效方案。
    Protein corona composition and precise physiological understanding of differentially expressed proteins are key for identifying disease biomarkers. In this report, we presented a distinctive quantitative proteomics table of molecular cell signaling differentially expressed proteins of corona that formed on iron carbide nanoparticles (NPs). High-performance liquid chromatography/electrospray ionization coupled with ion trap mass analyzer (HPLC/ESI-Orbitrap) and MASCOT helped quantify 142 differentially expressed proteins. Among these proteins, 104 proteins showed upregulated behavior and 38 proteins were downregulated with respect to the control, whereas 48, 32 and 24 proteins were upregulated and 8, 9 and 21 were downregulated CW (control with unmodified NPs), CY (control with modified NPs) and WY (modified and unmodified NPs), respectively. These proteins were further categorized on behalf of their regularity, locality, molecular functionality and molecular masses using gene ontology (GO). A STRING analysis was used to target the specific range of proteins involved in metabolic pathways and molecular processing in different kinds of binding functionalities, such as RNA, DNA, ATP, ADP, GTP, GDP and calcium ion bindings. Thus, this study will help develop efficient protocols for the identification of latent biomarkers in early disease detection using protein fingerprints.
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  • 文章类型: Journal Article
    精准畜牧业可以将传感器和复杂数据结合起来,提供简单的有意义的生产力评分,猪福利,和农场的可持续性,这是现代生猪生产的主要驱动力。例子包括使用红外热成像来监测母猪的温度,以检测疾病的早期阶段。考虑到这些驱动因素,我们分配了697个混合体(BHZPdb。Viktoria)将母猪播种到四个平价组。此外,通过汇集每只母猪和它们的仔猪的临床发现,母猪分为三组进行注释:健康,临床可疑,和患病。此外,乳房被热成像,并记录了性能数据。结果表明,八胎及以上母猪的病猪日增重最低[健康;192g±31.2,临床可疑;191g±31.3,患病;148g±50.3(p<0.05)],死产仔猪最高(健康;2.2±2.39,临床可疑;2.0±1.62,患病;3.91±4.93)。此外,通过乳房红外热成像,所有患病母猪的最高皮肤温度均较高(p<0.05)。因此,热成像与人工智能(AI)系统相结合可以帮助识别和定位有症状的动物的诊断,以便在最早的时间提示足够的反应。
    Precision livestock farming can combine sensors and complex data to provide a simple score of meaningful productivity, pig welfare, and farm sustainability, which are the main drivers of modern pig production. Examples include using infrared thermography to monitor the temperature of sows to detect the early stages of the disease. To take account of these drivers, we assigned 697 hybrid (BHZP db. Viktoria) sows to four parity groups. In addition, by pooling clinical findings from every sow and their piglets, sows were classified into three groups for the annotation: healthy, clinically suspicious, and diseased. Besides, the udder was thermographed, and performance data were documented. Results showed that the piglets of diseased sows with eighth or higher parity had the lowest daily weight gain [healthy; 192 g ± 31.2, clinically suspicious; 191 g ± 31.3, diseased; 148 g ± 50.3 (p < 0.05)] and the highest number of stillborn piglets (healthy; 2.2 ± 2.39, clinically suspicious; 2.0 ± 1.62, diseased; 3.91 ± 4.93). Moreover, all diseased sows showed higher maximal skin temperatures by infrared thermography of the udder (p < 0.05). Thus, thermography coupled with Artificial Intelligence (AI) systems can help identify and orient the diagnosis of symptomatic animals to prompt adequate reaction at the earliest time.
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