ESKAPE pathogens

ESKAPE 病原体
  • 文章类型: Journal Article
    抗菌素耐药性的上升使ESKAPE病原体成为严重的全球健康威胁,主要是由于当前治疗方案的局限性和频繁失败。这种日益增长的风险促使科学界寻求创新的抗生素疗法和改进的监督策略。这篇综述旨在全面概述ESKAPE病原体的起源和耐药机制。同时探索这些感染的下一代治疗策略。此外,它将解决对抗抗生素耐药性的传统和新方法,提供潜在新的治疗途径的见解。新兴的研究强调了开发新的抗微生物药物和克服耐药性的策略的紧迫性。强调对新药类别和联合疗法的需求。基因组技术的进步和对微生物发病机理的更深入了解对于确定有效的治疗方法至关重要。整合精准医学和个性化方法可以提高治疗效果。审查还强调了在监督和管理方面进行全球合作的重要性,以及政策改革,增强的诊断工具,和公众意识倡议,解决全球范围内的阻力。
    The rise of antimicrobial resistance has positioned ESKAPE pathogens as a serious global health threat, primarily due to the limitations and frequent failures of current treatment options. This growing risk has spurred the scientific community to seek innovative antibiotic therapies and improved oversight strategies. This review aims to provide a comprehensive overview of the origins and resistance mechanisms of ESKAPE pathogens, while also exploring next-generation treatment strategies for these infections. In addition, it will address both traditional and novel approaches to combating antibiotic resistance, offering insights into potential new therapeutic avenues. Emerging research underscores the urgency of developing new antimicrobial agents and strategies to overcome resistance, highlighting the need for novel drug classes and combination therapies. Advances in genomic technologies and a deeper understanding of microbial pathogenesis are crucial in identifying effective treatments. Integrating precision medicine and personalized approaches could enhance therapeutic efficacy. The review also emphasizes the importance of global collaboration in surveillance and stewardship, as well as policy reforms, enhanced diagnostic tools, and public awareness initiatives, to address resistance on a worldwide scale.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    远紫外线C光,波长为200-230nm,具有广谱杀菌效果。然而,由于对其用作替代抗菌剂的兴趣增加,需要进一步了解其基本杀菌功效。本研究有两个目标。首先,它通过实验研究了在透明缓冲液中以各种细胞密度悬浮的常见细菌的Far-UVC剂量反应,确保不受光敏悬浮介质的影响。增加剂量的Far-UVC被输送到屎肠球菌,大肠杆菌,铜绿假单胞菌和金黄色葡萄球菌在PBS中分别为101、102、103、105和107CFU·mL-1,并列举了存活的菌落形成单位(n≥3)。其次,通过系统的文献综述,这项工作试图探索属/种的影响,克式,细胞形式,细胞密度和辐照度对剂量反应的影响。对483篇出版物进行筛选,其中25篇纳入研究。整理了30个物种的数据,对实验结果进行了分析和比较。总的来说,革兰氏阳性物种比革兰氏阴性物种对Far-UVC表现出更大的弹性;确定了一些物种间和属间的弹性差异;内生孢子比营养细胞更具弹性;结果表明,随着细胞密度的增加,失活效率可能会降低;辐照度和杀菌剂量效应之间没有显着相关性。总之,这项研究表明,Far-UVC光是针对大量细菌营养细胞和内生孢子的有效去污工具。
    Far-ultraviolet C light, with a wavelength of 200-230 nm, has demonstrated broad-spectrum germicidal efficacy. However, due to increased interest in its use as an alternative antimicrobial, further knowledge about its fundamental bactericidal efficacy is required. This study had two objectives. Firstly, it investigated experimentally the Far-UVC dose-response of common bacteria suspended at various cell densities in transparent buffer, ensuring no influence from photosensitive suspending media. Increasing doses of Far-UVC were delivered to Enterococcus faecium, Escherichia coli, Pseudomonas aeruginosa and Staphylococcus aureus in PBS at 101, 102, 103, 105 and 107 CFU·mL-1, with surviving colony-forming units enumerated (n ≥ 3). Secondly, through a systematised literature review, this work sought to explore the impact of genus/species, Gram type, cell form, cell density and irradiance on dose-response. The screening of 483 publications was performed with 25 included in the study. Data for 30 species were collated, analysed and compared with the experimental results. Overall, Gram-positive species showed greater resilience to Far-UVC than Gram-negative; some inter-species and inter-genera differences in resilience were identified; endospores were more resilient than vegetative cells; the results suggested that inactivation efficiency may decrease as cell density increases; and no significant correlation was identified between irradiance and bactericidal dose effect. In conclusion, this study has shown Far-UVC light to be an effective decontamination tool against a vast range of bacterial vegetative cells and endospores.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    这项研究调查了与膜模拟系统(LUVs)的相互作用,细菌膜,CD光谱,和两个设计的曲马他辛突变体的杀菌活性,名为Trem-HK和Trem-HSK.突变体由托马他辛(Trem)的支架构建,来自南极鱼白蚁的天然22个氨基酸的AMP,旨在增加它们的正电荷。
    与Trematocine相比,设计的AMP对细菌膜的选择性得到了改善,通过它们与不同LUVs的相互作用及其膜分解活性来验证。此外,它们的α-螺旋构象不受氨基酸取代的影响。我们的发现揭示了对ESKAPE(屎肠球菌,金黄色葡萄球菌,肺炎克雷伯菌,鲍曼不动杆菌,铜绿假单胞菌,和肠杆菌科)Trem-HK和Trem-HSK的病原体。
    首先,我们表明,两种新设计的AMP对细菌膜的选择性与Trematocine相比大大提高,验证它们与不同LUVs的相互作用及其膜分解活性。我们确定它们的α-螺旋构象不受氨基酸取代的影响。我们表征了测试的细菌集合对不同类别抗生素的抗性特征。ESKAPE集合的最小抑制和杀菌浓度(MIC和MBC)值与曲马他辛相比降低了高达80%。Trematocine突变体的杀菌浓度显示出重要的膜分解作用,扫描电子显微镜很明显,所有测试的物种。我们进一步评估了突变体的细胞毒性和溶血活性。在2.5μM浓度下,两种突变体均表现出低细胞毒性和溶血,表明对细菌细胞的选择性。然而,这些影响在较高浓度时增加。
    使用Galleriamellonella模型对体内毒性的评估显示,在用两种突变体处理的幼虫中没有不良反应,即使浓度比观察到的鲍曼不动杆菌的最低MIC高20倍,表明突变体具有很高的潜在安全性。这项研究强调了通过增加Trem-HK和Trem-HSK的正电荷实现的抗菌功效的显着改善。这种改进是以降低的生物相容性为代价的。需要进一步的研究来优化这些有前途的AMP的功效和安全性之间的平衡。
    UNASSIGNED: This study investigated the interaction with membrane mimetic systems (LUVs), bacterial membranes, the CD spectra, and the bactericidal activity of two designed trematocine mutants, named Trem-HK and Trem-HSK. Mutants were constructed from the scaffold of Trematocine (Trem), a natural 22-amino acid AMP from the Antarctic fish Trematomus bernacchii, aiming to increase their positive charge.
    UNASSIGNED: The selectivity of the designed AMPs towards bacterial membranes was improved compared to Trematocine, verified by their interaction with different LUVs and their membranolytic activity. Additionally, their α-helical conformation was not influenced by the amino acid substitutions. Our findings revealed a significant enhancement in antibacterial efficacy against ESKAPE (Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa, and Enterobacteriaceae family) pathogens for both Trem-HK and Trem-HSK.
    UNASSIGNED: Firstly, we showed that the selectivity of the two new designed AMPs towards bacterial membranes was greatly improved compared to Trematocine, verifying their interaction with different LUVs and their membranolytic activity. We determined that their α-helical conformation was not influenced by the amino acid substitutions. We characterized the tested bacterial collection for resistance traits to different classes of antibiotics. The minimum inhibitory and bactericidal concentration (MIC and MBC) values of the ESKAPE collection were reduced by up to 80% compared to Trematocine. The bactericidal concentrations of Trematocine mutants showed important membranolytic action, evident by scanning electron microscopy, on all tested species. We further evaluated the cytotoxicity and hemolytic activity of the mutants. At 2.5 μM concentration, both mutants demonstrated low cytotoxicity and hemolysis, indicating selectivity towards bacterial cells. However, these effects increased at higher concentrations.
    UNASSIGNED: Assessment of in vivo toxicity using the Galleria mellonella model revealed no adverse effects in larvae treated with both mutants, even at concentrations up to 20 times higher than the lowest MIC observed for Acinetobacter baumannii, suggesting a high potential safety profile for the mutants. This study highlights the significant improvement in antibacterial efficacy achieved by increasing the positive charge of Trem-HK and Trem-HSK. This improvement was reached at the cost of reduced biocompatibility. Further research is necessary to optimize the balance between efficacy and safety for these promising AMPs.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    抗菌素耐药性(AMR)的加速上升构成了重大的全球健康风险,有必要探索替代策略来对抗致病性感染。对标准抗生素无反应的生物膜相关感染通常需要使用具有毒副作用和破坏微生物组的潜在的高阶抗微生物剂。益生菌疗法,凭借其多样化的优势和固有的安全性,正在成为预防和治疗各种感染的一种有前途的方法,作为抗生素治疗的替代方案。在这项研究中,我们从家山羊(Caprahircus)的肠道中分离了新型益生菌,并评估了它们对\'ESKAPE\'病原体组的抗菌和抗生物膜活性。我们进行了全面的微生物,生物化学,和分子表征,包括16S-rRNA基因V1-V3区和16S-23SISR区的分析,20个山羊肠道来源的乳酸菌(LAB)。其中,六个选定的乳杆菌分离株在厌氧条件下表现出大量的生物膜形成,并表现出强大的细胞表面疏水性和自聚集,和上皮细胞粘附特性突出了它们优越的肠定植能力。值得注意的是,这些乳杆菌分离株对“ESKAPE”病原体表现出广谱生长抑制和抗生物膜特性。此外,乳杆菌分离株对欧洲食品安全局(EFSA)在规定的最低抑制浓度限值内列出的抗生素敏感,表明它们作为饲料添加剂的安全性。在这项研究中,山羊肠道来源的乳杆菌分离株表现出的显着益生菌特征强烈支持它们作为抗生素和直接饲喂微生物(DFM)饲料补充剂在畜牧业中的令人信服的替代品的潜力。解决对无抗生素动物产品不断增长的需求。
    The accelerated rise in antimicrobial resistance (AMR) poses a significant global health risk, necessitating the exploration of alternative strategies to combat pathogenic infections. Biofilm-related infections that are unresponsive to standard antibiotics often require the use of higher-order antimicrobials with toxic side effects and the potential to disrupt the microbiome. Probiotic therapy, with its diverse benefits and inherent safety, is emerging as a promising approach to prevent and treat various infections, and as an alternative to antibiotic therapy. In this study, we isolated novel probiotic bacteria from the gut of domestic goats (Capra hircus) and evaluated their antimicrobial and anti-biofilm activities against the \'ESKAPE\' group of pathogens. We performed comprehensive microbiological, biochemical, and molecular characterizations, including analysis of the 16S-rRNA gene V1-V3 region and the 16S-23S ISR region, on 20 caprine gut-derived lactic acid bacteria (LAB). Among these, six selected Lactobacillus isolates demonstrated substantial biofilm formation under anaerobic conditions and exhibited robust cell surface hydrophobicity and autoaggregation, and epithelial cell adhesion properties highlighting their superior enteric colonization capability. Notably, these Lactobacillus isolates exhibited broad-spectrum growth inhibitory and anti-biofilm properties against \'ESKAPE\' pathogens. Additionally, the Lactobacillus isolates were susceptible to antibiotics listed by the European Food Safety Authority (EFSA) within the prescribed Minimum Inhibitory Concentration limits, suggesting their safety as feed additives. The remarkable probiotic characteristics exhibited by the caprine gut-derived Lactobacillus isolates in this study strongly endorse their potential as compelling alternatives to antibiotics and direct-fed microbial (DFM) feed supplements in the livestock industry, addressing the escalating need for antibiotic-free animal products.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    在细菌物种中普遍存在,包括携带抗生素抗性基因(ARGs)的菌株。噬菌体诱导可以由SOS对应激源的反应触发,导致细胞裂解。在被化学压力源污染的环境中,ARGs和原噬菌体共同携带的菌株可能会通过化学污染物介导的原噬菌体诱导和随后的细胞裂解来传播ARGs的未知风险。在这项研究中,我们调查了常见的非抗生素水污染物的影响,三氯生和银纳米颗粒,在携带ARGs的临床分离株中触发原噬菌体诱导,以及随后自然感受态细菌鲍氏不动杆菌吸收释放的ARGs。我们的结果表明,三氯生和银纳米颗粒,在与环境相关的浓度和商业产品中发现的浓度,显着增强各种临床分离株中的前噬菌体诱导。透射电子显微镜成像和噬斑测定证实了在非抗生素污染物介导的原噬菌体诱导下感染性噬菌体颗粒的产生。此外,在原蛋白诱导介导的细胞裂解释放细胞外ARG后,ARG向Baylyi的转化速率显着增加。非抗生素污染物介导的原噬菌体诱导的机制主要与过度的氧化应激有关,这引起了SOS的回应。我们的发现提供了对非抗生素污染物在通过触发原噬菌体诱导促进ARGs传播中的作用的见解。
    Prophages are prevalent among bacterial species, including strains carrying antibiotic resistance genes (ARGs). Prophage induction can be triggered by the SOS response to stressors, leading to cell lysis. In environments polluted by chemical stressors, ARGs and prophage co-harboring strains might pose an unknown risk of spreading ARGs through chemical pollutant-mediated prophage induction and subsequent cell lysis. In this study, we investigated the effects of common non-antibiotic water pollutants, triclosan and silver nanoparticles, on triggering prophage induction in clinical isolates carrying ARGs and the subsequent uptake of released ARGs by the naturally competent bacterium Acinetobacter baylyi. Our results demonstrate that both triclosan and silver nanoparticles, at environmentally relevant concentrations and those found in commercial products, significantly enhance prophage induction among various clinical isolates. Transmission electron microscopy imaging and plaque assays confirmed the production of infectious phage particles under non-antibiotic pollutants-mediated prophage induction. In addition, the rate of ARG transformation to A. baylyi significantly increased after the release of extracellular ARGs from prophage induction-mediated cell lysis. The mechanism of non-antibiotic pollutants-mediated prophage induction is primarily associated with excessive oxidative stress, which provokes the SOS response. Our findings offer insights into the role of non-antibiotic pollutants in promoting the dissemination of ARGs by triggering prophage induction.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Editorial
    暂无摘要。
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    抗菌素耐药性的上升,细菌的增加,和真菌感染,微生物生物膜带来的挑战需要探索创新的治疗策略。银基抗微生物剂因其广谱活性和多模态作用机制而受到关注。然而,它们对单一物种或多微生物生物膜的有效性仍然有限。在这项研究中,我们介绍了使用氨基酸共轭聚合物(ACP)通过绿色和水基原位技术制造聚合物-溴化银纳米复合材料。纳米复合材料结构促进活性组分的延长和控制释放。值得注意的是,纳米复合材料对多重耐药(MDR)人类致病菌(MIC=2-16μg/mL)和真菌(MIC=1-8μg/mL)具有广谱活性,同时对人类红细胞没有可检测的毒性(HC50>1024μg/mL)。与现有的抗菌药物和银基疗法相反,纳米复合材料有效根除细菌,真菌,和多微生物生物膜,并由于其膜活性特性而阻止了微生物抗性的发展。此外,在烧伤伤口感染的鼠模型中,铅聚合物-溴化银纳米复合材料显示出耐药铜绿假单胞菌负担减少了99%,具有优异的体内生物相容性。
    The rise in antimicrobial resistance, the increasing occurrence of bacterial, and fungal infections, and the challenges posed by polymicrobial biofilms necessitate the exploration of innovative therapeutic strategies. Silver-based antimicrobials have garnered attention for their broad-spectrum activity and multimodal mechanisms of action. However, their effectiveness against single-species or polymicrobial biofilms remains limited. In this study, we present the fabrication of polymer-silver bromide nanocomposites using amino acid conjugated polymers (ACPs) through a green and water-based in situ technique. The nanocomposite architecture facilitated prolonged and controlled release of the active components. Remarkably, the nanocomposites exhibited broad-spectrum activity against multidrug-resistant (MDR) human pathogenic bacteria (MIC = 2-16 μg/mL) and fungi (MIC = 1-8 μg/mL), while displaying no detectable toxicity to human erythrocytes (HC50 > 1024 μg/mL). In contrast to existing antimicrobials and silver-based therapies, the nanocomposite effectively eradicated bacterial, fungal, and polymicrobial biofilms, and prevented the development of microbial resistance due to their membrane-active properties. Furthermore, the lead polymer-silver bromide nanocomposite demonstrated a 99% reduction in the drug-resistant Pseudomonas aeruginosa burden in a murine model of burn wound infection, along with excellent in vivo biocompatibility.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    背景:屎肠球菌和金黄色葡萄球菌是ESKAPE组的革兰氏阳性病原体,众所周知,由于它们的高毒力和对抗生素的多重耐药性,对人类健康构成了巨大威胁。合并,肠球菌和金黄色葡萄球菌占医疗保健相关感染的26%,是引起血流感染的最常见生物。我们以前表明,屎肠球菌的肽基-丙氨酰基顺式/反式异构酶(PPIase)PpiC引起特定的生产,opsonic,和对几种屎肠球菌和粪肠球菌菌株有效的保护性抗体。由于PPIase的普遍存在特征及其在革兰氏阳性细胞内的基本功能,我们假设抗PpiC抗体具有潜在的交叉反应效应.
    结果:视光子吞噬试验与生物信息学相结合,鉴定出折叠酶蛋白PrsA是金黄色葡萄球菌的一种新的潜在疫苗抗原。我们表明,PrsA是一种稳定的二聚体蛋白,能够引发针对金黄色葡萄球菌菌株MW2的调理抗体,以及在几种金黄色葡萄球菌中的交叉结合和交叉调理,屎肠球菌和粪肠球菌菌株。
    结论:鉴于金黄色葡萄球菌和肠球菌存在多种抗生素耐药性,寻找预防策略对于对抗这两种医院病原体至关重要。该研究显示了PrsA作为抗原用于针对两种危险的革兰氏阳性ESKAPE细菌的疫苗制剂的潜力。我们的发现支持了在泛疫苗组学策略框架中,应该进一步研究PPIase作为疫苗靶标的观点。
    BACKGROUND: Enterococcus faecium and Staphylococcus aureus are the Gram-positive pathogens of the ESKAPE group, known to represent a great threat to human health due to their high virulence and multiple resistances to antibiotics. Combined, enterococci and S. aureus account for 26% of healthcare-associated infections and are the most common organisms responsible for blood stream infections. We previously showed that the peptidyl-prolyl cis/trans isomerase (PPIase) PpiC of E. faecium elicits the production of specific, opsonic, and protective antibodies that are effective against several strains of E. faecium and E. faecalis. Due to the ubiquitous characteristics of PPIases and their essential function within Gram-positive cells, we hypothesized a potential cross-reactive effect of anti-PpiC antibodies.
    RESULTS: Opsonophagocytic assays combined with bioinformatics led to the identification of the foldase protein PrsA as a new potential vaccine antigen in S. aureus. We show that PrsA is a stable dimeric protein able to elicit opsonic antibodies against the S. aureus strain MW2, as well as cross-binding and cross-opsonic in several S. aureus, E. faecium and E. faecalis strains.
    CONCLUSIONS: Given the multiple antibiotic resistances S. aureus and enterococci present, finding preventive strategies is essential to fight those two nosocomial pathogens. The study shows the potential of PrsA as an antigen to use in vaccine formulation against the two dangerous Gram-positive ESKAPE bacteria. Our findings support the idea that PPIases should be further investigated as vaccine targets in the frame of pan-vaccinomics strategy.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    ESKAPE组中包括的物种(屎肠球菌,金黄色葡萄球菌,肺炎克雷伯菌,鲍曼不动杆菌,铜绿假单胞菌和肠杆菌属)具有很高的抗微生物耐药性(AMR)能力,健康问题已经是导致死亡的主要原因之一,到2050年可能每年杀死1000万人。新的潜在治疗分子的产生不足以对抗AMR“危机”世界卫生组织(WHO)表示将寻求促进快速诊断策略的发展。金属纳米颗粒(MNPs)的物理化学性质使得设计能够在短期内识别低浓度ESKAPE细菌的生物传感器成为可能;其他系统可以识别抗菌药物敏感性,和一些已经设计了双重活性原位(细菌检测和抗菌活性),这表明,在不久的将来,基于能够快速识别临床生态位中的细菌病原体的MNPs,可以存在多功能生物传感器。这篇综述的重点是使用基于MNP的系统快速,准确地识别临床上重要的细菌病原体,展示了为实现这些目标而进行详尽研究的必要性。这篇综述的重点是使用基于金属纳米颗粒的系统来快速准确地识别临床上重要的细菌病原体。
    The species included in the ESKAPE group (Enterococcus faecium, Staphylococcus aureus, Klebsiella pneumoniae, Acinetobacter baumannii, Pseudomonas aeruginosa and the genus Enterobacter) have a high capacity to develop antimicrobial resistance (AMR), a health problem that is already among the leading causes of death and could kill 10 million people a year by 2050. The generation of new potentially therapeutic molecules has been insufficient to combat the AMR \"crisis\", and the World Health Organization (WHO) has stated that it will seek to promote the development of rapid diagnostic strategies. The physicochemical properties of metallic nanoparticles (MNPs) have made it possible to design biosensors capable of identifying low concentrations of ESKAPE bacteria in the short term; other systems identify antimicrobial susceptibility, and some have been designed with dual activity in situ (bacterial detection and antimicrobial activity), which suggests that, in the near future, multifunctional biosensors could exist based on MNPs capable of quickly identifying bacterial pathogens in clinical niches might become commercially available. This review focuses on the use of MNP-based systems for the rapid and accurate identification of clinically important bacterial pathogens, exhibiting the necessity for exhaustive research to achieve these objectives. This review focuses on the use of metal nanoparticle-based systems for the rapid and accurate identification of clinically important bacterial pathogens.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    噬菌体是生物圈中最普遍的生物实体。然而,医学相关性和测序技术的局限性导致了对噬菌体遗传多样性的系统性低估.这种代表性不足不仅在我们对噬菌体在不同生物系统中的作用的理解中造成了巨大的差距,而且还在依赖于这些数据进行训练和测试的计算模型中引入了偏见。在这项研究中,我们重点研究了感染高优先级ESKAPE病原体的噬菌体的公开基因组,以显示这种代表性不足的程度和影响.首先,我们证明了ESKAPE噬菌体基因组在公共基因组和蛋白质数据库中的代表性明显不足.接下来,对这些ESKAPE噬菌体的全基因组分析揭示了感染同一宿主的噬菌体之间核心基因的广泛共享。此外,基因组分析和聚类突出了ESKAPE噬菌体之间密切的核苷酸水平关系,引起人们对当前公共数据库中有限多样性的担忧。最后,我们发现缺乏对ESKAPE病原体具有抗菌活性的独特裂解噬菌体和噬菌体蛋白。对ESKAPE噬菌体的全面分析强调了代表性不足的严重性及其潜在影响。噬菌体基因组中多样性的缺乏可能会限制噬菌体疗法的复苏,并由于不完整和不平衡的生物学数据集导致数据驱动的计算模型中的偏倚结果。
    Bacteriophages are the most prevalent biological entities in the biosphere. However, limitations in both medical relevance and sequencing technologies have led to a systematic underestimation of the genetic diversity within phages. This underrepresentation not only creates a significant gap in our understanding of phage roles across diverse biosystems but also introduces biases in computational models reliant on these data for training and testing. In this study, we focused on publicly available genomes of bacteriophages infecting high-priority ESKAPE pathogens to show the extent and impact of this underrepresentation. First, we demonstrate a stark underrepresentation of ESKAPE phage genomes within the public genome and protein databases. Next, a pangenome analysis of these ESKAPE phages reveals extensive sharing of core genes among phages infecting the same host. Furthermore, genome analyses and clustering highlight close nucleotide-level relationships among the ESKAPE phages, raising concerns about the limited diversity within current public databases. Lastly, we uncover a scarcity of unique lytic phages and phage proteins with antimicrobial activities against ESKAPE pathogens. This comprehensive analysis of the ESKAPE phages underscores the severity of underrepresentation and its potential implications. This lack of diversity in phage genomes may restrict the resurgence of phage therapy and cause biased outcomes in data-driven computational models due to incomplete and unbalanced biological datasets.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

公众号