Disulfidptosis

二硫化物下垂
  • 文章类型: Journal Article
    卵巢癌(OC)在女性中排名第五,并表现出不利的预后。为了改善OC患者的预后,通过合并二硫下垂相关基因,形成了开创性的风险特征.
    对OC组织和正常组织进行了比较分析,并使用|log2(倍数变化)|>0.585和调整后的P值<0.05的标准发现了差异表达的二硫化物凋亡相关基因(DRGs)。随后,TCGA训练集用于创建预后风险标志,通过使用TCGA测试集和GEO数据集进行了验证。此外,免疫细胞浸润,突变负荷,对化疗的反应,并分析了对免疫治疗的反应。为了进一步验证这些发现,对卵巢肿瘤细胞系进行QRT-PCR分析。
    使用十四个差异表达基因(DEGs)创建了与二硫键下垂相关的风险特征,能够将卵巢癌(OC)患者分为高危组(HRG)和低危组(LRG)。与LRG相比,HRG表现出较低的总生存期(OS)。此外,即使在纳入临床因素后,风险评分仍是独立预测因子.此外,LRG显示较低的基质,免疫,以及与HRG相比的估计分数,暗示风险签名之间可能存在的联系,免疫细胞浸润,和突变负载。最后,QRT-PCR实验显示,与人正常OC细胞系IOSE80相比,人OC细胞系SKOV3中有8个基因上调,而6个基因下调。
    由二硫键下垂相关基因组成的十四个生物标志物标记可以作为OC的有价值的风险分层工具,有助于识别可能从个性化治疗和随访管理中受益的患者。
    UNASSIGNED: Ovarian cancer (OC) ranks as the fifth most prevalent neoplasm in women and exhibits an unfavorable prognosis. To improve the OC patient\'s prognosis, a pioneering risk signature was formulated by amalgamating disulfidptosis-related genes.
    UNASSIGNED: A comparative analysis of OC tissues and normal tissues was carried out, and differentially expressed disulfidptosis-related genes (DRGs) were found using the criteria of |log2 (fold change) | > 0.585 and adjusted P-value <0.05. Subsequently, the TCGA training set was utilized to create a prognostic risk signature, which was validated by employing both the TCGA testing set and the GEO dataset. Moreover, the immune cell infiltration, mutational load, response to chemotherapy, and response to immunotherapy were analyzed. To further validate these findings, QRT-PCR analysis was conducted on ovarian tumor cell lines.
    UNASSIGNED: A risk signature was created using fourteen differentially expressed genes (DEGs) associated with disulfidptosis, enabling the classification of ovarian cancer (OC) patients into high-risk group (HRG) and low-risk group (LRG). The HRG exhibited a lower overall survival (OS) compared to the LRG. In addition, the risk score remained an independent predictor even after incorporating clinical factors. Furthermore, the LRG displayed lower stromal, immune, and estimated scores compared to the HRG, suggesting a possible connection between the risk signature, immune cell infiltration, and mutational load. Finally, the QRT-PCR experiments revealed that eight genes were upregulated in the human OC cell line SKOV3 compared with the human normal OC line IOSE80, while six genes were down-regulated.
    UNASSIGNED: A fourteen-biomarker signature composed of disulfidptosis-related genes could serve as a valuable risk stratification tool in OC, facilitating the identification of patients who may benefit from individualized treatment and follow-up management.
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  • 文章类型: Journal Article
    二硫化物,一个重要的化合物家族,具有不同的生物活性,可以影响生理和病理状态之间的动态平衡。最近发表的一项研究发现,二硫化物的异常积累对细胞具有致命作用。这种细胞死亡的机制,被命名为二硫化物下垂,不同于其他已知的细胞死亡机制,包括突起,凋亡,坏死,和焦亡。二硫键下垂与癌症发展的关系,特别是子宫内膜癌,尚不清楚。
    为了解决这个知识差距,我们对癌症基因组图谱数据库中的样本进行了初步分析.将样品平均分为训练组和测试组。共提取2308个差异表达基因,和11用于构建预后模型。
    基于使用预后模型计算的风险评分,样本分为高危组和低危组.生存时间,肿瘤突变负荷,微卫星不稳定性评分在两组间有显著差异.此外,预测治疗效果的组间差异.与文献中的其他模型比较表明,该预后模型具有更好的预测能力。
    本研究的结果为了解双硫性上清液与子宫内膜癌之间的关系提供了一个通用框架,可用于临床评估和选择适当的个性化治疗策略。
    UNASSIGNED: Disulfide, an essential compounds family, has diverse biological activity and can affect the dynamic balance between physiological and pathological states. A recently published study found that aberrant accumulation of disulfide had a lethal effect on cells. This mechanism of cell death, named disulfidptosis, differs from other known cell death mechanisms, including cuproptosis, apoptosis, necroptosis, and pyroptosis. The relationship between disulfidptosis and development of cancer, in particular endometrial carcinoma, remains unclear.
    UNASSIGNED: To address this knowledge gap, we performed a preliminary analysis of samples from The Cancer Genome Atlas database. The samples were divided equally into a training group and a test group. A total of 2308 differentially expressed genes were extracted, and 11 were used to construct a prognostic model.
    UNASSIGNED: Based on the risk score calculated using the prognostic model, the samples were divided into a high-risk group and a low-risk group. Survival time, tumor mutation burden, and microsatellite instability scores differed significantly between the two groups. Furthermore, a between-group difference in treatment effect was predicted. Comparison with other models in the literature indicated that this prognostic model had better predictive anility.
    UNASSIGNED: The results of this study provide a general framework for understanding the relationship between disulfidptosis and endometrial cancer that could be used for clinical evaluation and selection of appropriate personalized treatment strategies.
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  • 文章类型: Journal Article
    二硫化物下垂,一种新发现的程序性细胞死亡模式,关于其在肿瘤中的多组学特征,还有待全面阐明,特定的致病机制,和肝癌的抗肿瘤功能。这项研究包括来自33种癌症类型的10,327个肿瘤和正常组织样本。使用各种生物信息学工具进行的深入分析揭示了泛癌症中二硫键凋亡相关基因(DRGs)的广泛失调以及与预后的显着关联。遗传变异,肿瘤干性,甲基化水平,和药物敏感性。单变量和多变量Cox回归和LASSO回归用于筛选和构建肝癌背景下的预后相关枢纽DRGs和预测模型。随后,进行单细胞分析以研究RPN1的亚细胞定位,在各种实体瘤中。进行Western印迹以验证RPN1在细胞和组织水平上的表达。此外,功能实验,包括CCK8,EdU,克隆人,和transwell分析,表明RPN1敲低促进了肝癌细胞的增殖和侵袭能力。因此,这项研究阐明了泛癌症中DRGs的多组学特征,并建立了肝癌的预后模型。此外,这项研究揭示了RPN1在肝癌中的分子功能,表明其作为这种疾病治疗靶点的潜力。
    Disulfidptosis, a newly identified mode of programmed cell death, is yet to be comprehensively elucidated with respect to its multi-omics characteristics in tumors, specific pathogenic mechanisms, and antitumor functions in liver cancer. This study included 10,327 tumor and normal tissue samples from 33 cancer types. In-depth analyses using various bioinformatics tools revealed widespread dysregulation of disulfidptosis-related genes (DRGs) in pan-cancer and significant associations with prognosis, genetic variations, tumor stemness, methylation levels, and drug sensitivity. Univariate and multivariate Cox regression and LASSO regression were used to screen and construct prognosis-related hub DRGs and predictive models in the context of liver cancer. Subsequently, single cell analysis was conducted to investigate the subcellular localization of RPN1, a hub DRG, in various solid tumors. Western blotting was performed to validate the expression of RPN1 at both cellular and tissue levels. Additionally, functional experiments, including CCK8, EdU, clone, and transwell assays, indicated that RPN1 knockdown promoted the proliferative and invasive capacities of liver cancer cells. Therefore, this study elucidated the multi-omics characteristics of DRGs in pan-cancer and established a prognostic model for liver cancer. Additionally, this study revealed the molecular functions of RPN1 in liver cancer, suggesting its potential as a therapeutic target for this disease.
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  • 文章类型: Journal Article
    二硫化物凋亡是最近确定的调节细胞死亡模式。调节癌中的二硫键下垂是一种有前途的治疗方法。长非编码RNA(lncRNAs)与多种癌症的发生发展有关。尚未研究HPV阴性口腔鳞状细胞癌(OSCC)中的二硫键下垂相关lncRNAs(DRLs)。基于癌症基因组图谱(TCGA)数据库,使用最小绝对收缩选择算子(LASSO)分析和Cox回归分析来鉴定总生存相关DRL并构建签名.Kaplan-Meier,探索了与时间相关的接收器操作特征(ROC)和主成分分析(PCA),以证明签名的预测潜力。根据不同临床病理特征进行亚组分析。通过DRLs特征和独立的临床病理特征建立列线图。进行校准图以揭示列线图的准确性。免疫细胞亚群浸润,免疫治疗反应,药物敏感性分析,和肿瘤突变负荷(TMB)进行。通过基因集富集分析(GSEA)分析探索基本功能和途径。从PubMed检索OSCC的先前lncRNA签名用于进一步验证。将基因表达综合(GEO)数据集(GSE41613和GSE85446)合并作为DRL签名的外部验证。还探索了DRL签名的一致性聚类分析和DRL的实验验证。这项研究揭示了DRL签名在生存预测中的稳健性能,免疫细胞浸润,免疫逃逸,HPV阴性OSCC的免疫治疗。
    Disulfidptosis is a recently identified mode of regulated cell death. Regulating disulfidptosis in carcinoma is a promising therapeutic approach. Long non-coding RNAs (lncRNAs) have been reported to be related to the occurrence and development of many cancers. Disulfidptosis-related lncRNAs (DRLs) in HPV-negative oral squamous cell carcinoma (OSCC) have not been studied. Based on The Cancer Genome Atlas (TCGA) database, least absolute shrinkage selection operator (LASSO) analysis and Cox regression analysis were used to identify overall survival related DRLs and construct the signature. Kaplan-Meier, time-dependent receiver operating characteristics (ROC) and principal component analyses (PCA) were explored to demonstrate the prediction potential of the signature. Subgroup analysis stratified by different clinicopathological characteristics were conducted. Nomogram was established by DRLs signature and independent clinicopathological characteristics. The calibration plots were performed to reveal the accuracy of nomogram. Immune cell subset infiltration, immunotherapy response, drug sensitivity analysis, and tumor mutation burden (TMB) were conducted. Underlying functions and pathways were explored by Gene Set Enrichment Analysis (GSEA) analysis. Previous lncRNA signatures of OSCC were retrieved from PubMed for further validation. Gene expression omnibus (GEO) datasets (GSE41613 and GSE85446) were merged as an external validation for DRLs signature. Consensus clustering analysis of DRLs signature and experimental validation of DRLs were also explored. This research sheds light on the robust performance of DRLs signature in survival prediction, immune cell infiltration, immune escape, and immunotherapy of HPV-negative OSCC.
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  • 文章类型: Journal Article
    几种心血管疾病与细胞焦亡的异常激活有关,铁性凋亡,坏死,突起,二硫键下垂和巨噬细胞极化是导致血管损伤和心脏功能异常的标志。同时,这三种新形式的细胞功能障碍与线粒体稳态密切相关。线粒体是提供能量和维持细胞稳态的主要细胞器。线粒体的稳定性是通过一系列的调控途径来维持的,比如线粒体裂变,线粒体融合和线粒体自噬。研究表明,线粒体功能障碍(例如,线粒体动力学和线粒体自噬受损)促进ROS产生,导致氧化应激,诱导细胞焦亡,铁性凋亡,坏死,突起,二硫键下垂和巨噬细胞M1表型极化。因此,深入了解线粒体在细胞焦亡过程中的动态调节,铁性凋亡,坏死,突起,二硫键下垂和巨噬细胞极化是必要的,以了解心血管疾病的发展。本文系统总结线粒体动力学和线粒体自噬的变化对调节新型细胞功能障碍和巨噬细胞极化的影响,以促进对心血管疾病发病机制的深入理解,为心血管疾病的治疗提供相应的理论参考。
    Several cardiovascular illnesses are associated with aberrant activation of cellular pyroptosis, ferroptosis, necroptosis, cuproptosis, disulfidptosis, and macrophage polarisation as hallmarks contributing to vascular damage and abnormal cardiac function. Meanwhile, these three novel forms of cellular dysfunction are closely related to mitochondrial homeostasis. Mitochondria are the main organelles that supply energy and maintain cellular homeostasis. Mitochondrial stability is maintained through a series of regulatory pathways, such as mitochondrial fission, mitochondrial fusion and mitophagy. Studies have shown that mitochondrial dysfunction (e.g., impaired mitochondrial dynamics and mitophagy) promotes ROS production, leading to oxidative stress, which induces cellular pyroptosis, ferroptosis, necroptosis, cuproptosis, disulfidptosis and macrophage M1 phenotypic polarisation. Therefore, an in-depth knowledge of the dynamic regulation of mitochondria during cellular pyroptosis, ferroptosis, necroptosis, cuproptosis, disulfidptosis and macrophage polarisation is necessary to understand cardiovascular disease development. This paper systematically summarises the impact of changes in mitochondrial dynamics and mitophagy on regulating novel cellular dysfunctions and macrophage polarisation to promote an in-depth understanding of the pathogenesis of cardiovascular diseases and provide corresponding theoretical references for treating cardiovascular diseases.
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  • 文章类型: Journal Article
    背景:透明细胞肾细胞癌(ccRCC)是最常见的肾肿瘤亚型,与不良预后相关。二硫键凋亡是最近鉴定的由二硫键介导的细胞死亡形式。许多研究强调了免疫检查点基因(ICGs)在ccRCC中的重要性。然而,关于ccRCC中与二硫键凋亡相关的免疫检查点基因(DRICGs)的参与仍知之甚少.
    方法:ccRCC患者的mRNA表达谱和临床病理数据来自癌症基因组图谱和基因表达综合(GEO)数据库。评估了二硫化物凋亡相关基因(DRGs)和免疫检查点基因(ICGs)之间的关联以鉴定DRICGs。进行Cox回归分析和最小绝对收缩和选择算子(LASSO)分析以构建风险特征。
    结果:共鉴定出39个差异表达的免疫相关候选基因。利用9个DRICGs(CD276,CD80,CD86,HLA-E,LAG3,PDCD1LG2,PVR,TIGIT,和TNFRSF4),并使用GEO数据进行了验证。风险模型作为ccRCC的独立预后指标,而相关的列线图为ccRCC提供了可靠的评分系统。基因集富集分析表明磷脂酶D富集,抗原加工和呈递,和抗坏血酸和醛盐代谢相关的信号通路在高危人群中。此外,DRICGs与各种免疫细胞的浸润表现出相关性。值得注意的是,根据该模型将ccRCC患者分为不同的风险组,对潜在的治疗剂表现出不同的敏感性。
    结论:新的基于DRICG的风险特征是ccRCC患者预后的可靠指标。此外,它还有助于药物选择,并与ccRCC中的肿瘤免疫微环境相关。
    BACKGROUND: Clear cell renal cell carcinoma (ccRCC) is the most prevalent subtype of renal tumors and is associated with a unfavorable prognosis. Disulfidptosis is a recently identified form of cell death mediated by disulfide bonds. Numerous studies have highlighted the significance of immune checkpoint genes (ICGs) in ccRCC. Nevertheless, the involvement of disulfidptosis-related immune checkpoint genes (DRICGs) in ccRCC remains poorly understood.
    METHODS: The mRNA expression profiles and clinicopathological data of ccRCC patients were obtained from The Cancer Genome Atlas and Gene Expression Omnibus (GEO) databases. The associations between disulfidptosis-related genes (DRGs) and immune checkpoint genes (ICGs) were assessed to identify DRICGs. Cox regression analysis and least absolute shrinkage and selection operator (LASSO) analysis were conducted to construct a risk signature.
    RESULTS: A total of 39 differentially expressed immune-related candidate genes were identified. A prognostic signature was constructed utilizing nine DRICGs (CD276, CD80, CD86, HLA-E, LAG3, PDCD1LG2, PVR, TIGIT, and TNFRSF4) and validated using GEO data. The risk model functioned as an independent prognostic indicator for ccRCC, while the associated nomogram provided a reliable scoring system for ccRCC. Gene set enrichment analysis indicated enrichment of phospholipase D, antigen processing and presentation, and ascorbate and aldarate metabolism-related signaling pathways in the high-risk group. Furthermore, the DRICGs exhibited correlations with the infiltration of various immune cells. It is noteworthy that patients with ccRCC categorized into distinct risk groups based on this model displayed varying sensitivities to potential therapeutic agents.
    CONCLUSIONS: The novel DRICG-based risk signature is a reliable indicator for the prognosis of ccRCC patients. Moreover, it also aids in drug selection and correlates with the tumour immune microenvironment in ccRCC.
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  • 文章类型: Journal Article
    二硫化物下垂,一种新发现的前列腺癌(PCa)的程序性细胞死亡途径,与细胞内二硫键应激和糖酵解密切相关。本研究旨在阐明二硫键凋亡相关基因(DRGs)在PCa发病机制和进展中的作用,目的是改进诊断和治疗方法。我们分析了来自TCGA的PCa数据集和正常组织转录组数据,GEO,MSKCC使用一致性聚类分析和LASSO回归,我们开发了一个风险评分模型,这在一个独立的队列中得到了验证。通过Kaplan-Meier曲线证实了模型的预测准确性,接收机工作特性(ROC)曲线,和列线图。此外,我们探讨了风险评分与免疫细胞浸润之间的关系,并检查了不同风险组的肿瘤微环境和体细胞突变。我们还研究了对免疫疗法和药物敏感性的反应。我们的分析确定了两种二硫化物亚型,在存活率上有显著差异,免疫环境,和治疗反应。根据我们的风险评分,高风险组表现出较差的无进展生存期(PFS)和较高的肿瘤突变负担(TMB),与免疫抑制增加有关。功能富集分析将高风险特征与关键癌症通路联系起来,包括IL-17信号通路。此外,药物敏感性分析显示不同的化疗反应,提示基于二硫化物的个性化治疗策略的潜力。值得注意的是,我们确定PROK1是PCa的关键预后标志物,其表达降低与疾病进展相关。总之,我们的研究全面评估了DRGs在PCa进展和预后中的临床意义,为量身定制的精准医学方法提供重要见解。
    Disulfidptosis, a newly identified programmed cell death pathway in prostate cancer (PCa), is closely associated with intracellular disulfide stress and glycolysis. This study aims to elucidate the roles of disulfidptosis-related genes (DRGs) in the pathogenesis and progression of PCa, with the goal of improving diagnostic and therapeutic approaches. We analyzed PCa datasets and normal tissue transcriptome data from TCGA, GEO, and MSKCC. Using consensus clustering analysis and LASSO regression, we developed a risk scoring model, which was validated in an independent cohort. The model\'s predictive accuracy was confirmed through Kaplan-Meier curves, receiver operating characteristic (ROC) curves, and nomograms. Additionally, we explored the relationship between the risk score and immune cell infiltration, and examined the tumor microenvironment and somatic mutations across different risk groups. We also investigated responses to immunotherapy and drug sensitivity. Our analysis identified two disulfidosis subtypes with significant differences in survival, immune environments, and treatment responses. According to our risk score, the high-risk group exhibited poorer progression-free survival (PFS) and higher tumor mutational burden (TMB), associated with increased immune suppression. Functional enrichment analysis linked high-risk features to key cancer pathways, including the IL-17 signaling pathway. Moreover, drug sensitivity analysis revealed varied responses to chemotherapy, suggesting the potential for disulfidosis-based personalized treatment strategies. Notably, we identified PROK1 as a crucial prognostic marker in PCa, with its reduced expression correlating with disease progression. In summary, our study comprehensively assessed the clinical implications of DRGs in PCa progression and prognosis, offering vital insights for tailored precision medicine approaches.
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  • 文章类型: Journal Article
    二硫键凋亡是一种新的细胞死亡形式,与已建立的程序性细胞死亡途径如细胞凋亡有区别。焦亡,自噬,铁性凋亡,和下垂。该过程的特征是在葡萄糖饥饿期间,细胞中烟酰胺腺嘌呤二核苷酸磷酸(NADPH)的快速消耗和溶质载体家族7成员11(SLC7A11)的高表达,导致胱氨酸异常积累,随后在肌动蛋白细胞骨架蛋白中诱导和异常的二硫键形成,最终导致肌动蛋白网络崩溃和二硫化物下垂。这篇综述旨在总结潜在的机制,影响因素,与传统细胞死亡途径的比较,与相关疾病的关联,应用前景,和未来的研究方向。
    Disulfidptosis is a novel form of cell death that is distinguishable from established programmed cell death pathways such as apoptosis, pyroptosis, autophagy, ferroptosis, and oxeiptosis. This process is characterized by the rapid depletion of nicotinamide adenine dinucleotide phosphate (NADPH) in cells and high expression of solute carrier family 7 member 11 (SLC7A11) during glucose starvation, resulting in abnormal cystine accumulation, which subsequently induces andabnormal disulfide bond formation in actin cytoskeleton proteins, culminating in actin network collapse and disulfidptosis. This review aimed to summarize the underlying mechanisms, influencing factors, comparisons with traditional cell death pathways, associations with related diseases, application prospects, and future research directions related to disulfidptosis.
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  • 文章类型: Journal Article
    二硫化物下垂,一种新发现的由细胞内二硫化物化合物过度积累引起的细胞死亡模式,与肿瘤的发展密切相关。本研究主要探讨肾透明细胞癌(ccRCC)与肾透明细胞癌(ccRCC)的关系。首先,显示了ccRCC中二硫凋亡相关基因(DRGs)的特征,其中包括数量变异(CNV),单核苷酸变异(SNV),DNA甲基化,mRNA表达和基因突变。然后,通过基于DRGs的无监督聚类将ccRCC样本分为三个聚类。评估了三个集群之间的存活和途径富集差异。随后,通过单变量Cox筛选三个簇中的差异表达基因(DEGs),拉索,和多变量Cox分析,获得了五个关键DEG。根据五个关键DEG,将ccRCC样品重新分类为两个基因组,并研究了两个基因组之间的存活差异和免疫细胞浸润。下一步,根据五个关键DEGs的PCA评分将ccRCC样本分为两组,即PCA评分高组(HPSG)和PCA评分低组(LPSG)。在此基础上,生存预后的差异,免疫细胞浸润和与免疫检查点的相关性,比较了HPSG和LPSG对靶向药物的敏感性差异.HPSG中四个免疫检查点的表达水平高于LPSG,而LPSG对靶向药物治疗比HPSG更敏感。最后,对HDAC4的验证实验表明,HDAC4可以增加ccRCC细胞的增殖和集落形成能力。
    Disulfidptosis, a newly discovered mode of cell death caused by excessive accumulation of intracellular disulfide compounds, is closely associated with tumor development. This study focused on the relationship between disulfidptosis and clear cell renal cell carcinoma (ccRCC). Firstly, the characterizations of disulfidptosis-related genes (DRGs) in ccRCC were showed, which included number variation (CNV), single nucleotide variation (SNV), DNA methylation, mRNA expression and gene mutation. Then, the ccRCC samples were classified into three clusters through unsupervised clustering based on DRGs. Survival and pathway enrichment differences were evaluated among the three clusters. Subsequently, the differentially expressed genes (DEGs) among the three clusters were screened by univariate Cox, LASSO, and multivariate Cox analysis, and five key DEGs were obtained. Based on the five key DEGs, the ccRCC samples were reclassified into two geneclusters and the survival differences and immune cell infiltration between two geneclusters was investigated. In next step, ccRCC samples were divided into two groups according to PCA scores of five key DEGs, namely high PCA score group (HPSG) and low PCA score group (LPSG). On this basis, differences in survival prognosis, immune cell infiltration and correlation with immune checkpoint, as well as differences in sensitivity to targeted drugs were compared between HPSG and LPSG. The expression levels of four immune checkpoints were higher in HPSG than in LPSG, whereas the LPSG was more sensitive to targeted drug therapy than the HPSG. Finally, validation experiments on HDAC4 indicated that HDAC4 could increase the proliferation and colony formation ability of ccRCC cells.
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  • 文章类型: Journal Article
    骨关节炎(OA)是人类残疾的主要原因。尽管接受了治疗,OA中晚期患者的生存结局较差。因此,在预测的框架内,预防性,和个性化医疗(PPPM/3PM),OA的早期个性化诊断尤为突出。PPPM旨在通过整合多种组学技术来准确识别疾病;然而,目前可用的方法和生物标志物在预测和诊断OA方面的效率应该得到提高.二硫化物下垂,一种新的程序性细胞死亡机制,并出现在特定的代谢状态,在OA的发生和发展中扮演着神秘的角色,这需要进一步调查。
    在这项研究中,我们整合了来自基因表达综合(GEO)数据库的三个公共数据集,包括26个OA样品和20个正常样品。通过一系列生物信息学分析和机器学习,我们确定了OA的诊断生物标志物和几种亚型.此外,这些生物标志物的表达在我们的内部队列和单细胞数据集中得到验证.
    二硫化物降的三个重要调节剂(NCKAP1,OXSM,和SLC3A2)通过差异表达分析和机器学习进行鉴定。基于这三个调节器构建的列线图在预测早期和晚期OA方面表现出理想的效率。此外,基于三个调节器的表达式,我们确定了OA的两种与二硫键下垂相关的亚型,它们具有不同的免疫细胞浸润和个性化的免疫检查点表达水平.值得注意的是,在我们的内部队列中,包括6例OA患者和6例正常人,这3种调节因子的表达在单细胞RNA谱中得到证实,并在滑膜组织中得到证实.最后,建立了一个有效的二硫沉积介导的OA诊断模型,训练集中的AUC值为97.6923%,两个验证集中的AUC值为93.3333%和100%。
    总的来说,关于PPPM,这项研究提供了新的见解二硫下垂调节因子在OA的个性化诊断和治疗中的作用。
    UNASSIGNED: Osteoarthritis (OA) is a major cause of human disability. Despite receiving treatment, patients with the middle and late stage of OA have poor survival outcomes. Therefore, within the framework of predictive, preventive, and personalized medicine (PPPM/3PM), early personalized diagnosis of OA is particularly prominent. PPPM aims to accurately identify disease by integrating multiple omic techniques; however, the efficiency of currently available methods and biomarkers in predicting and diagnosing OA should be improved. Disulfidptosis, a novel programmed cell death mechanism and appeared in particular metabolic status, plays a mysterious characteristic in the occurrence and development of OA, which warrants further investigation.
    UNASSIGNED: In this study, we integrated three public datasets from the Gene Expression Omnibus (GEO) database, including 26 OA samples and 20 normal samples. Via a series of bioinformatic analysis and machine learning, we identified the diagnostic biomarkers and several subtypes of OA. Moreover, the expression of these biomarkers were verified in our in-house cohort and the single cell dataset.
    UNASSIGNED: Three significant regulators of disulfidptosis (NCKAP1, OXSM, and SLC3A2) were identified through differential expression analysis and machine learning. And a nomogram constructed based on these three regulators exhibited ideal efficiency in predicting early- and late-stage OA. Furthermore, based on the expression of three regulators, we identified two disulfidptosis-related subtypes of OA with different infiltration of immune cells and personalized expression level of immune checkpoints. Notably, the expression of the three regulators was demonstrated in a single-cell RNA profile and verified in the synovial tissue in our in-house cohort including 6 OA patients and 6 normal people. Finally, an efficient disulfidptosis-mediated diagnostic model was constructed for OA, with the AUC value of 97.6923% in the training set and 93.3333% and 100% in two validation sets.
    UNASSIGNED: Overall, with regard to PPPM, this study provided novel insights into the role of disulfidptosis regulators in the personalized diagnosis and treatment of OA.
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