Despeckling

  • 文章类型: Journal Article
    超声检查被广泛用于筛查甲状腺肿瘤,因为它是安全的,易于使用,和低成本。然而,它同时受到斑点噪声和其他伪影的影响,因此,早期发现甲状腺异常对放射科医生来说变得困难。因此,各种研究人员不断解决超声检查的局限性,并提高了US图像对最近3次衰变的甲状腺组织的诊断潜力。因此,本研究广泛回顾了用于对与数据集相关的甲状腺肿瘤US(TTUS)图像进行分类的各种CAD系统,去斑点算法,分割算法,特征提取和选择,评估参数,和分类算法。经过详尽的审查,报告了成就和挑战,并为新研究人员建立路线图。
    Ultrasonography is widely used to screen thyroid tumors because it is safe, easy to use, and low-cost. However, it is simultaneously affected by speckle noise and other artifacts, so early detection of thyroid abnormalities becomes difficult for the radiologist. Therefore, various researchers continuously address the limitations of sonography and improve the diagnosis potential of US images for thyroid tissue from the last three decays. Accordingly, the present study extensively reviewed various CAD systems used to classify thyroid tumor US (TTUS) images related to datasets, despeckling algorithms, segmentation algorithms, feature extraction and selection, assessment parameters, and classification algorithms. After the exhaustive review, the achievements and challenges have been reported, and build a road map for the new researchers.
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  • 文章类型: Journal Article
    基于编码器-解码器的语义分割模型将图像像素分类为相应的类,例如ROI(感兴趣区域)或背景。在本研究中,基于简单/扩张卷积/序列/有向无环图(DAG)的编码器-解码器语义分割模型已经实现,即,SegNet(VGG16),SegNet(VGG19),U-Net,mobileNetv2,ResNet18,ResNet50,Xception和Inception网络的部分TTUS(甲状腺肿瘤超声)图像。已使用迁移学习来训练这些分割网络使用原始和去斑点的TTUS图像。已使用mIoU和mDC度量来计算网络的性能。根据详尽的实验,已经观察到,基于ResNet50的分割模型客观地获得了最好的结果,mIoU的值为0.87,mDC为0.94,根据放射科医生对形状的意见,margin,和节段性病变的回声特征。值得注意的是,分割模型,即ResNet50,基于客观和主观评估提供更好的细分。它可以在医疗保健系统中用于实时准确地识别甲状腺结节。
    Encoder-decoder-based semantic segmentation models classify image pixels into the corresponding class, such as the ROI (region of interest) or background. In the present study, simple / dilated convolution / series / directed acyclic graph (DAG)-based encoder-decoder semantic segmentation models have been implemented, i.e., SegNet (VGG16), SegNet (VGG19), U-Net, mobileNetv2, ResNet18, ResNet50, Xception and Inception networks for the segment TTUS(Thyroid Tumor Ultrasound) images. Transfer learning has been used to train these segmentation networks using original and despeckled TTUS images. The performance of the networks has been calculated using mIoU and mDC metrics. Based on the exhaustive experiments, it has been observed that ResNet50-based segmentation model obtained the best results objectively with values 0.87 for mIoU, 0.94 for mDC, and also according to radiologist opinion on shape, margin, and echogenicity characteristics of segmented lesions. It is noted that the segmentation model, namely ResNet50, provides better segmentation based on objective and subjective assessment. It may be used in the healthcare system to identify thyroid nodules accurately in real time.
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  • 文章类型: Journal Article
    目的:肾衰竭的主要原因是慢性和多囊肾疾病。囊肿,石头,和肿瘤的发展导致慢性肾脏疾病,通常损害肾功能。肾脏疾病是无症状的,并且在其初始阶段没有任何明显的症状。因此,早期诊断肾脏疾病是防止肾功能丧失和肾衰竭的必要条件。
    方法:本文提出了一种计算机辅助诊断(CAD)系统,用于从超声图像中检测多类肾脏异常。提出的CAD系统使用预训练的ResNet-101模型来提取特征和支持向量机(SVM)分类器用于分类目的。超声图像通常会受到斑点噪声的影响,斑点噪声会降低CAD系统的图像质量和性能。因此,有必要从超声图像中去除斑点噪声。因此,提出了一种基于CAD的系统,该系统使用深度残差学习网络(RLN)来降低斑点噪声。使用深度RLN对超声图像进行预处理有助于大幅改善CAD系统的分类性能。与现有的最新方法相比,所提出的CAD系统实现了更好的预测结果。
    结果:为了验证提出的CAD系统性能,实验已在嘈杂的肾脏超声图像中进行。与现有方法相比,设计的系统框架实现了最大的分类精度。基于与K近邻等各种分类器的性能比较,为CAD系统选择SVM分类器,树,判别式,天真的贝叶斯,和线性。
    结论:与现有最先进的方法相比,所提出的CAD系统在对噪声肾超声图像进行精确分类方面优于现有技术。Further,根据选择性和灵敏度评分来评估CAD系统。所提出的具有预处理模块的CAD系统将用作用于从超声图像诊断多类肾脏异常的实时支持工具。
    OBJECTIVE: The primary causes of kidney failure are chronic and polycystic kidney diseases. Cyst, stone, and tumor development lead to chronic kidney diseases that commonly impair kidney functions. The kidney diseases are asymptomatic and do not show any significant symptoms at its initial stage. Therefore, diagnosing the kidney diseases at their earlier stage is required to prevent the loss of kidney function and kidney failure.
    METHODS: This paper proposes a computer-aided diagnosis (CAD) system for detecting multi-class kidney abnormalities from ultrasound images. The presented CAD system uses a pre-trained ResNet-101 model for extracting the features and support vector machine (SVM) classifier for the classification purpose. Ultrasound images usually gets affected by speckle noise that degrades the image quality and performance of the CAD system. Hence, it is necessary to remove speckle noise from the ultrasound images. Therefore, a CAD based system is proposed with the despeckling module using a deep residual learning network (RLN) to reduce speckle noise. Pre-processing of ultrasound images using deep RLN helps to drastically improve the classification performance of the CAD system. The proposed CAD system achieved better prediction results when compared to the existing state-of-the-art methods.
    RESULTS: To validate the proposed CAD system performance, the experiments have been carried out in the noisy kidney ultrasound images. The designed system framework achieved the maximum classification accuracy when compared to the existing approaches. The SVM classifier is selected for the CAD system based on performance comparison with various classifiers like K-nearest neighbour, tree, discriminant, Naive Bayes, and linear.
    CONCLUSIONS: The proposed CAD system outperforms in classifying the noisy kidney ultrasound images precisely as compared to the existing state-of-the-art methods. Further, the CAD system is evaluated in terms of selectivity and sensitivity scores. The presented CAD system with the pre-processing module would serve as a real-time supporting tool for diagnosing multi-class kidney abnormalities from the ultrasound images.
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  • 文章类型: Journal Article
    由于用于捕获被成像的组织的特性的探测信号的建设性和破坏性干扰,在超声数据中引入斑点。文献中讨论了过多的模型,通过对超声图像进行去斑点来提高超声图像的对比度和分辨率。有一类模型假设噪声在其原始形式中是乘性的,并且将模型转换为对数域使其成为加法域。然而,这样的转换适当地简化了场景,并且没有捕获斑点的数据相关性质的固有属性。因此,导致重建不良。在随后的工作中,通过采用各种模型来解决噪声及其分布的数据相关性质,可以在很大程度上解决此问题。这项工作介绍了一种基于Retinex理论建立的噪声分布的非局部总有界变分模型。这种受感知启发的模型显然可以恢复并改善图像的对比度,而不会损害数据中固有的细节。使用Bregman公式对模型进行了数值实现,以提高收敛速度并降低参数灵敏度。突出了实验结果并进行了比较,以证明模型的有效性。
    Speckles are introduced in the ultrasound data due to constructive and destructive interference of the probing signals that are used for capturing the characteristics of the tissue being imaged. There are a plethora of models discussed in the literature to improve the contrast and resolution of the ultrasound images by despeckling them. There is a class of models that assumes that the noise is multiplicative in its original form, and transforming the model to a log domain makes it an additive one. Nevertheless, such a transformation duly oversimplifies the scenario and does not capture the inherent properties of the data-correlated nature of speckles. Therefore, it results in poor reconstruction. This problem is addressed to a considerable extent in the subsequent works by adopting various models to address the data-correlated nature of the noise and its distributions. This work introduces a weberized non-local total bounded variational model based on the noise distribution built on the Retinex theory. This perceptually inspired model apparently restores and improves the contrast of the images without compromising much on the details inherently present in the data. The numerical implementation of the model is carried out using the Bregman formulation to improve the convergence rate and reduce the parameter sensitivity. The experimental results are highlighted and compared to demonstrate the efficiency of the model.
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  • 文章类型: Journal Article
    斑点噪声污染医学超声图像,抑制斑点噪声有助于图像判读。传统的超声去噪(即,去斑点)方法是在二维静态图像上开发的。然而,超声检查的优点之一是其动态成像的性质。用于动态超声去斑的方法被期望在动态超声的连续图像中并入空间和时间信息两者,并且因此产生更好的去噪性能。在这里,我们将动态超声视频视为三维(3-D)图像,在空间域中具有两个维度,在时间域中具有一个维度,并且我们提出了一种用于动态超声的去斑算法,称为3-D基于Gabor的各向异性扩散(GAD-3D)。GAD-3D将经典的基于二维Gabor的各向异性扩散(GAD)扩展到3-D域。首先,通过三维Gabor变换捕获边缘,提出了一种鲁棒的三维Gabor边缘检测器。然后,我们将这种新颖的检测器嵌入到GAD的偏微分方程中以指导3-D扩散过程。在仿真实验中,当噪声方差高达0.14时,GAD-3D提高了普拉特的品质因数,平均结构相似指数和峰值信噪比降低24.32%,10.98%,和6.51%,分别,与其他七种方法的最佳值进行比较。临床动态超声检查的实验结果表明,GAD-3D在降噪和细节保留方面优于其他七种方法。GAD-3D对于动态超声去斑是有效的,并且对于动态医学超声检查中的疾病评估可能具有潜在的价值。
    Speckle noise contaminates medical ultrasound images, and the suppression of speckle noise is helpful for image interpretation. Traditional ultrasound denoising (i.e., despeckling) methods are developed on two-dimensional static images. However, one of the advantages of ultrasonography is its nature of dynamic imaging. A method for dynamic ultrasound despeckling is expected to incorporate both the spatial and temporal information in successive images of dynamic ultrasound and thus yield better denoising performance. Here we regard a dynamic ultrasound video as three-dimensional (3-D) images with two dimensions in the spatial domain and one in the temporal domain, and we propose a despeckling algorithm for dynamic ultrasound named the 3-D Gabor-based anisotropic diffusion (GAD-3D). The GAD-3D expands the classic two-dimensional Gabor-based anisotropic diffusion (GAD) into 3-D domain. First, we proposed a robust 3-D Gabor-based edge detector by capturing the edge with 3-D Gabor transformation. Then we embed this novel detector into the partial differential equation of GAD to guide the 3-D diffusion process. In the simulation experiment, when the noise variance is as high as 0.14, the GAD-3D improves the Pratt\'s figure of merit, mean structural similarity index and peak signal-to-noise ratio by 24.32%, 10.98%, and 6.51%, respectively, compared with the best values of seven other methods. Experimental results on clinical dynamic ultrasonography suggest that the GAD-3D outperforms the other seven methods in noise reduction and detail preservation. The GAD-3D is effective for dynamic ultrasound despeckling and may be potentially valuable for disease assessment in dynamic medical ultrasonography.
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  • 文章类型: Journal Article
    背景与目的超声是用于诊断与身体内脏器官有关的各种疾病的非放射性成像方式。超声图像(UI)中存在斑点噪声是不可避免的,并且可能影响图像的分辨率和对比度。斑点噪声的存在降低了图像的视觉评价。在基于计算机辅助UI的诊断系统中,UI的去斑是理想的预处理步骤。方法本文提出了一种使用预训练残差学习网络(RLN)对UI进行去斑点的新方法。最初,RLN用原始图像及其相应的噪声图像进行训练,以实现更好的性能。所开发的方法选择预训练的RLN用于以更少的计算资源对UI进行去斑。但是RLN从头开始的训练过程在计算上要求很高。预训练的RLN是盲去斑方法,并且不需要任何微调和噪声水平估计。与现有的最先进的方法相比,所提出的方法在去除斑点噪声方面具有优势。结果为了突出所提出方法的有效性,已经考虑了来自滑铁卢数据集的原始图像。提出的基于预训练RLN的UI去斑方法在不同斑点噪声水平下产生了更好的峰值信噪比(PSNR)和结构相似性指数度量(SSIM)。采用无参考图像质量方法,以确保所建立的方法对实时UI的鲁棒性。从结果来看,很明显,在自然度图像质量评价器(NIQE)方面,该方法的性能优于现有方法。结论从实验结果来看,很明显,所提出的方法在人工添加和自然产生的散斑图像方面优于现有的去斑方法。
    Background and objective Ultrasound is the non-radioactive imaging modality used in the diagnosis of various diseases related to the internal organs of the body. The presence of speckle noise in ultrasound image (UI) is inevitable and may affect resolution and contrast of the image. Existence of the speckle noise degrades the visual evaluation of the image. The despeckling of UI is a desirable pre-processing step in computer-aided UI based diagnosis systems. Methods This paper proposes a novel method for despeckling UIs using pre-trained residual learning network (RLN). Initially, RLN is trained with pristine and its corresponding noisy images in order to achieve a better performance. The developed method chooses a pre-trained RLN for despeckling UIs with less computational resources. But the training procedure of RLN from scratch is computationally demanding. The pre-trained RLN is a blind despeckling approach and does not require any fine tuning and noise level estimation. The presented approach shows superiority in the removal of speckle noise as compared to the existing state-of-art methods. Results To highlight the effectiveness of the proposed method the pristine images from the Waterloo dataset has been considered. The proposed pre-trained RLN based UI despeckling method resulted in a better peak signal to noise ratio (PSNR) and structural similarity index measure (SSIM) at different speckle noise levels. The no-reference image quality approach is adopted to ensure robustness of the established method for real time UI. From results it is obvious that, the performance of the proposed method is superior than the existing methods in terms of naturalness image quality evaluator (NIQE). Conclusions From the experimental results, it is clear that the proposed method outperforms the existing despeckling methods in terms of both artificially added and naturally occurring speckle images.
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  • 文章类型: Journal Article
    本文提出了用于视网膜光学相干断层扫描(OCT)的新型预处理图像增强算法。这些图像包含大量的斑点,导致它们是粒状的并且具有非常低的对比度。为了使这些图像对临床解释有价值,我们提出了一种去除斑点的新方法,同时保留每个视网膜层中包含的有用信息。该过程从基于双树复小波变换(DT-CWT)的多尺度去斑开始。我们通过使用新颖的自适应加权双边滤波器(AWBF)的平滑过程进一步增强了OCT图像。这提供了在OCT图像层内保留纹理的期望性质。增强的OCT图像然后被分割以提取包含用于眼睛研究的有用信息的内部视网膜层。我们的层分割技术也在DT-CWT域中执行。最后,我们描述了一种OCT/眼底图像配准算法,当两种模式一起用于诊断和信息融合时,该算法很有用。
    This paper presents novel pre-processing image enhancement algorithms for retinal optical coherence tomography (OCT). These images contain a large amount of speckle causing them to be grainy and of very low contrast. To make these images valuable for clinical interpretation, we propose a novel method to remove speckle, while preserving useful information contained in each retinal layer. The process starts with multi-scale despeckling based on a dual-tree complex wavelet transform (DT-CWT). We further enhance the OCT image through a smoothing process that uses a novel adaptive-weighted bilateral filter (AWBF). This offers the desirable property of preserving texture within the OCT image layers. The enhanced OCT image is then segmented to extract inner retinal layers that contain useful information for eye research. Our layer segmentation technique is also performed in the DT-CWT domain. Finally we describe an OCT/fundus image registration algorithm which is helpful when two modalities are used together for diagnosis and for information fusion.
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  • 文章类型: Journal Article
    Ultrasound imaging of the common carotid artery (CCA) is a non-invasive tool used in medicine to assess the severity of atherosclerosis and monitor its progression through time. It is also used in border detection and texture characterization of the atherosclerotic carotid plaque in the CCA, the identification and measurement of the intima-media thickness (IMT) and the lumen diameter that all are very important in the assessment of cardiovascular disease (CVD). Visual perception, however, is hindered by speckle, a multiplicative noise, that degrades the quality of ultrasound B-mode imaging. Noise reduction is therefore essential for improving the visual observation quality or as a pre-processing step for further automated analysis, such as image segmentation of the IMT and the atherosclerotic carotid plaque in ultrasound images. In order to facilitate this preprocessing step, we have developed in MATLAB(®) a unified toolbox that integrates image despeckle filtering (IDF), texture analysis and image quality evaluation techniques to automate the pre-processing and complement the disease evaluation in ultrasound CCA images. The proposed software, is based on a graphical user interface (GUI) and incorporates image normalization, 10 different despeckle filtering techniques (DsFlsmv, DsFwiener, DsFlsminsc, DsFkuwahara, DsFgf, DsFmedian, DsFhmedian, DsFad, DsFnldif, DsFsrad), image intensity normalization, 65 texture features, 15 quantitative image quality metrics and objective image quality evaluation. The software is publicly available in an executable form, which can be downloaded from http://www.cs.ucy.ac.cy/medinfo/. It was validated on 100 ultrasound images of the CCA, by comparing its results with quantitative visual analysis performed by a medical expert. It was observed that the despeckle filters DsFlsmv, and DsFhmedian improved image quality perception (based on the expert\'s assessment and the image texture and quality metrics). It is anticipated that the system could help the physician in the assessment of cardiovascular image analysis.
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