Delineation

划界
  • 文章类型: Journal Article
    从心电图(ECG)中提取逐次搏动信息对于依赖于基于ECG的测量的各种下游诊断任务至关重要。然而,这些测量可能是昂贵且耗时的,尤其是长期录音。传统的心电检测和勾画方法,依靠经典的信号处理算法,例如基于小波变换的算法,产生高质量的轮廓,但难以推广到不同的心电图模式。基于深度学习算法的机器学习(ML)技术已经成为有希望的替代方案,能够在没有手工制作的功能或阈值的情况下实现类似的性能。然而,有监督的机器学习技术需要大量带注释的数据集进行训练,和用于ECG检测/描绘的现有数据集的大小和它们所代表的病理状况的范围是有限的。
    本文通过介绍两个关键创新来解决这一挑战。首先,我们开发了一种合成数据生成方案,该方案从现有数据库中提取的基本片段的\"池\"中概率地构建看不见的ECG迹线。一组规则将这些片段的排列引导成连贯的合成痕迹,而专家领域知识确保生成的痕迹的真实性,增加训练模型的输入变异性。第二,我们提出了两个新颖的基于分割的损失函数,它们鼓励准确预测独立ECG结构的数量,并通过关注减少的样本数来促进更紧密的分割边界.
    所提出的方法实现了卓越的性能,F1分数为99.38%,心电图节段的起始和偏移在P上的描绘误差为2.19±17.73ms和4.45±18.32ms,QRS,T波。这些结果,从三个不同的免费数据库(QT,LU,和浙江),超越了当前最先进的检测和描绘方法。
    值得注意的是,该模型表现出卓越的性能,尽管在引线配置的变化,采样频率,并代表病理生理机制,强调其强大的泛化能力。现实世界的例子,具有各种病理的临床数据,说明了我们在不同医疗环境中简化ECG分析的方法的潜力,通过释放代码作为开源来促进。
    UNASSIGNED: Extracting beat-by-beat information from electrocardiograms (ECGs) is crucial for various downstream diagnostic tasks that rely on ECG-based measurements. However, these measurements can be expensive and time-consuming to produce, especially for long-term recordings. Traditional ECG detection and delineation methods, relying on classical signal processing algorithms such as those based on wavelet transforms, produce high-quality delineations but struggle to generalise to diverse ECG patterns. Machine learning (ML) techniques based on deep learning algorithms have emerged as promising alternatives, capable of achieving similar performance without handcrafted features or thresholds. However, supervised ML techniques require large annotated datasets for training, and existing datasets for ECG detection/delineation are limited in size and the range of pathological conditions they represent.
    UNASSIGNED: This article addresses this challenge by introducing two key innovations. First, we develop a synthetic data generation scheme that probabilistically constructs unseen ECG traces from \"pools\" of fundamental segments extracted from existing databases. A set of rules guides the arrangement of these segments into coherent synthetic traces, while expert domain knowledge ensures the realism of the generated traces, increasing the input variability for training the model. Second, we propose two novel segmentation-based loss functions that encourage the accurate prediction of the number of independent ECG structures and promote tighter segmentation boundaries by focusing on a reduced number of samples.
    UNASSIGNED: The proposed approach achieves remarkable performance, with a F 1 -score of 99.38% and delineation errors of 2.19 ± 17.73  ms and 4.45 ± 18.32  ms for ECG segment onsets and offsets across the P, QRS, and T waves. These results, aggregated from three diverse freely available databases (QT, LU, and Zhejiang), surpass current state-of-the-art detection and delineation approaches.
    UNASSIGNED: Notably, the model demonstrated exceptional performance despite variations in lead configurations, sampling frequencies, and represented pathophysiology mechanisms, underscoring its robust generalisation capabilities. Real-world examples, featuring clinical data with various pathologies, illustrate the potential of our approach to streamline ECG analysis across different medical settings, fostered by releasing the codes as open source.
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  • 文章类型: Journal Article
    背景:虽然在盆腔淋巴结区域(LNRs)的勾画方面已经达成了国际共识,观察者间和观察者内的显著差异持续存在。勾画这些临床目标体积以用于盆腔恶性肿瘤的放射既耗时又费力。
    目的:本研究的目的是开发一种针对盆腔癌患者的盆腔LNRs描绘的深度学习模型。
    方法:计划对160例盆腔原发性恶性肿瘤患者进行计算机断层扫描(CT)研究(包括直肠,前列腺,和宫颈癌)进行回顾性收集,并分为训练集(n=120)和测试集(n=40)。六个骨盆LNR,包括腹部骶前,骨盆骶前,髂内结节,髂外淋巴结,闭孔节点,腹股沟淋巴结由两名放射肿瘤学家描绘为地面真值(Gt)轮廓。级联多头U网(CMU网)是根据训练队列的Gt等值线构建的,随后在测试队列中得到验证.使用骰子相似系数(DSC)评估了六个LNR(自动)的自动描绘,平均表面距离(ASD),95百分位数Hausdorff距离(HD95),和7分的量表得分。
    结果:在测试集中,通过CMU-net模型,六个骨盆LNR的DSC从0.851变化到0.942,ASD从0.381变化到1.037mm,和HD95从2.025到3.697毫米。在术后和术前病例之间,这三个参数没有显着差异。CMU-net模型的自动轮廓的95.9%和96.2%由两名专家放射肿瘤学家获得1-3分,分别,这意味着只需要进行少量编辑。
    结论:CMU网成功开发用于盆腔恶性肿瘤放疗的盆腔LNRs自动勾画,改善了轮廓效率,高度一致,这可能证明其在放射治疗工作流程中的实施是合理的。
    BACKGROUND: While there are established international consensuses on the delineation of pelvic lymph node regions (LNRs), significant inter- and intra-observer variabilities persist. Contouring these clinical target volumes for irradiation in pelvic malignancies is both time-consuming and labor-intensive.
    OBJECTIVE: The purpose of this study was to develop a deep learning model of pelvic LNRs delineation for patients with pelvic cancers.
    METHODS: Planning computed tomography (CT) studies of 160 patients with pelvic primary malignancies (including rectal, prostate, and cervical cancer) were retrospectively collected and divided into training set (n = 120) and testing set (n = 40). Six pelvic LNRs, including abdominal presacral, pelvic presacral, internal iliac nodes, external iliac nodes, obturator nodes, and inguinal nodes were delineated by two radiation oncologists as ground truth (Gt) contours. The cascaded multi-heads U-net (CMU-net) was constructed based on the Gt contours from training cohort, which was subsequently verified in the testing cohort. The automatic delineation of six LNRs (Auto) was evaluated using dice similarity coefficient (DSC), average surface distance (ASD), 95th percentile Hausdorff distance (HD95), and a 7-point scale score.
    RESULTS: In the testing set, the DSC of six pelvic LNRs by CMU-net model varied from 0.851 to 0.942, ASD from 0.381 to 1.037 mm, and HD95 from 2.025 to 3.697 mm. No significant differences were founded in these three parameters between postoperative and preoperative cases. 95.9% and 96.2% of auto delineations by CMU-net model got a score of 1-3 by two expert radiation oncologists, respectively, meaning only minor edits needed.
    CONCLUSIONS: The CMU-net was successfully developed for automated delineation of pelvic LNRs for pelvic malignancies radiotherapy with improved contouring efficiency and highly consistent, which might justify its implementation in radiotherapy work flow.
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  • 文章类型: Journal Article
    分类隐蔽物种的鉴定对于有效保护生物多样性至关重要。淡水有限的生物倾向于通过排水边界进行遗传隔离,因此,预计将显示出大量的隐秘系统发育和分类学多样性。相比之下,杂种类群的种群,在淡水和海洋环境之间迁移,预计将显示较少的遗传分化。在这里,我们测试了两种广泛分布的南半球鱼类的澳大拉西亚种群(杂色和非杂色)的隐秘多样性,短发星系和黄斑星系。mtDNA和核标记都揭示了这些分类单元中推定的隐蔽物种。在G.brevipinnis中检测到的大量多样性可以解释为其强大的攀爬能力,使其能够形成孤立的内陆种群。在岛屿人口中,G.brevipinnis类似地显示出比G.maculatus更深的遗传差异,这可以解释为海洋中G.maculatus幼虫的丰富程度更高,从而可以进行更多的传播。我们的研究强调,即使是广泛的,“高分散性”物种可以拥有大量隐秘的多样性,因此需要增加分类学和保护方面的关注。
    Identification of taxonomically cryptic species is essential for the effective conservation of biodiversity. Freshwater-limited organisms tend to be genetically isolated by drainage boundaries, and thus may be expected to show substantial cryptic phylogenetic and taxonomic diversity. By comparison, populations of diadromous taxa, that migrate between freshwater and marine environments, are expected to show less genetic differentiation. Here we test for cryptic diversity in Australasian populations (both diadromous and non-diadromous) of two widespread Southern Hemisphere fish species, Galaxias brevipinnis and Galaxias maculatus. Both mtDNA and nuclear markers reveal putative cryptic species within these taxa. The substantial diversity detected within G. brevipinnis may be explained by its strong climbing ability which allows it to form isolated inland populations. In island populations, G. brevipinnis similarly show deeper genetic divergence than those of G. maculatus, which may be explained by the greater abundance of G. maculatus larvae in the sea allowing more ongoing dispersal. Our study highlights that even widespread, \'high-dispersal\' species can harbour substantial cryptic diversity and therefore warrant increased taxonomic and conservation attention.
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  • 文章类型: Journal Article
    脑转移瘤(BMs)是成人中最常见的颅内恶性肿瘤,并且是归因于恶性脑疾病的主要死亡原因。放射治疗(RT)在治疗BMs中起着至关重要的作用,使用局部RT技术,例如立体定向放射外科(SRS)/立体定向身体放射疗法(SBRT),显示出显着的治疗效果。肿瘤总目标体积(GTV)的精确确定对于确保SRS/SBRT的有效性至关重要。CT等多模态成像技术,MRI,和PET被广泛用于BMs的诊断和GTV的测定。随着功能成像和人工智能(AI)技术的发展,有更多创新的方法来确定BMS的GTV,大大提高了测定的准确性和效率。本文概述了BMs中GTV测定RT的研究进展。
    Brain metastases (BMs) are the most prevalent intracranial malignant tumors in adults and are the leading cause of mortality attributed to malignant brain diseases. Radiotherapy (RT) plays a critical role in the treatment of BMs, with local RT techniques such as stereotactic radiosurgery (SRS)/stereotactic body radiotherapy (SBRT) showing remarkable therapeutic effectiveness. The precise determination of gross tumor target volume (GTV) is crucial for ensuring the effectiveness of SRS/SBRT. Multimodal imaging techniques such as CT, MRI, and PET are extensively used for the diagnosis of BMs and GTV determination. With the development of functional imaging and artificial intelligence (AI) technology, there are more innovative ways to determine GTV for BMs, which significantly improve the accuracy and efficiency of the determination. This article provides an overview of the progress in GTV determination for RT in BMs.
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  • 文章类型: Editorial
    暂无摘要。
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  • 文章类型: Journal Article
    目的:OAR描绘准确性影响:(i)患者的优化剂量分布(PD),(ii)批准时提交的报告剂量(RD),代表计划质量。这项研究利用了一种新颖的剂量学验证方法,在自动化计划工作流程中,根据PD和RD全面评估基于CT扫描仪的新AI轮廓解决方案。
    方法:选择20例前列腺患者评估直肠AI轮廓,膀胱,和股骨近端.考虑了五个规划“管道”;三个使用不同级别的手动编辑的人工智能轮廓(名义上没有(AIStd),特定区域的次要编辑(AIMinEd),并完全纠正(AIFullEd))。其余管道是两名观察员(MDOb1、MDOb2)的人工划定。为每个管道生成自动化放射治疗计划。AIStd等高线集的几何和剂量一致性,AIMinEd,AIFullEd和MDOb2对照参考组MDOb1进行评估。评估了人工智能管道的非劣效性,假设与MDOb1相比,AI轮廓指标的绝对偏差不大于MDOb2。
    结果:与MDOb1相比,器官描绘时间减少了24.9分钟(96%),AIStd为21.4分钟(79%)和12.2分钟(45%),分别为AIMinEd和AIFullEd。所有管道均与MDOb1表现出良好的剂量学一致性。对于RD,绝对体积的中位数偏差在±1.8cm3,±1.7%和±0.6Gy内,分别为相对体积和平均剂量指标。对于PD,各自的值在±0.4cm3、±0.5%和±0.2Gy范围内。统计学上(p<0.05),AIMinEd和AIFullEd在剂量上不劣于MDOb2。
    结论:这种新颖的剂量学验证表明,在有针对性的次要编辑(AIMinEd)之后,AI轮廓在剂量上不劣于手动轮廓,减少79%的圈定时间。
    OBJECTIVE: OAR delineation accuracy influences: (i) a patient\'s optimised dose distribution (PD), (ii) the reported doses (RD) presented at approval, which represent plan quality. This study utilised a novel dosimetric validation methodology, comprehensively evaluating a new CT-scanner-based AI contouring solution in terms of PD and RD within an automated planning workflow.
    METHODS: 20 prostate patients were selected to evaluate AI contouring for rectum, bladder, and proximal femurs. Five planning \'pipelines\' were considered; three using AI contours with differing levels of manual editing (nominally none (AIStd), minor editing in specific regions (AIMinEd), and fully corrected (AIFullEd)). Remaining pipelines were manual delineations from two observers (MDOb1, MDOb2). Automated radiotherapy plans were generated for each pipeline. Geometric and dosimetric agreement of contour sets AIStd, AIMinEd, AIFullEd and MDOb2 were evaluated against the reference set MDOb1. Non-inferiority of AI pipelines was assessed, hypothesising that compared to MDOb1, absolute deviations in metrics for AI contouring were no greater than that from MDOb2.
    RESULTS: Compared to MDOb1, organ delineation time was reduced by 24.9 min (96 %), 21.4 min (79 %) and 12.2 min (45 %) for AIStd, AIMinEd and AIFullEd respectively. All pipelines exhibited generally good dosimetric agreement with MDOb1. For RD, median deviations were within ± 1.8 cm3, ± 1.7 % and ± 0.6 Gy for absolute volume, relative volume and mean dose metrics respectively. For PD, respective values were within ± 0.4 cm3, ± 0.5 % and ± 0.2 Gy. Statistically (p < 0.05), AIMinEd and AIFullEd were dosimetrically non-inferior to MDOb2.
    CONCLUSIONS: This novel dosimetric validation demonstrated that following targeted minor editing (AIMinEd), AI contours were dosimetrically non-inferior to manual delineations, reducing delineation time by 79 %.
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  • 文章类型: Journal Article
    目的:高级别胶质瘤(HGG)放射治疗计划中目标描绘的准确性对于实现高肿瘤控制至关重要,同时尽量减少治疗相关的毒性。磁共振成像(MRI)代表了用于描绘神经胶质瘤的标准成像方式,在准确确定肿瘤的微观范围方面存在固有的局限性。这项研究的目的是评估多参数MRI(mpMRI)和[18F]-FETPET/CT的多观察者描绘变异性的生存影响。
    方法:30例前瞻性纳入组织学证实为HGG的患者接受了PET/CT和包括弥散加权成像(DWI:b0,b1000,ADC)的mpMRI,对比增强T1加权成像(T1-Gado),T2加权流体衰减反演恢复(T2Flair),和灌注加权成像,计算相对脑血容量(rCBV)和K2图。九位放射肿瘤学家描绘了PET/CT和MRI序列。计算每个序列的读取器之间的空间相似性(Dice相似性系数:DSC)。使用Kaplan-Meier曲线和对数秩检验评估DSC对无进展生存期(PFS)和总生存期(OS)的影响。
    结果:形态序列达到最高DSC平均值,T2Flair和T1Gado的范围从0.71+/-0.18到0.84+/-0.09,分别,而PET/CT定义的代谢体积达到0.75+/-0.11的平均DSC。rCBV变异性(平均DSC0.32+/-0.20)显著影响PFS(p=0.02)和OS(p=0.002)。
    结论:我们的数据表明T1-Gado和T2Flair序列是最可重复的序列,其次是PET/CT。功能序列的可重复性低,但rCBV阅读器间相似性显著影响PFS和OS。
    OBJECTIVE: The accuracy of target delineation in radiation treatment planning of high-grade gliomas (HGGs) is crucial to achieve high tumor control, while minimizing treatment-related toxicity. Magnetic resonance imaging (MRI) represents the standard imaging modality for delineation of gliomas with inherent limitations in accurately determining the microscopic extent of tumors. The purpose of this study was to assess the survival impact of multi-observer delineation variability of multiparametric MRI (mpMRI) and [18F]-FET PET/CT.
    METHODS: Thirty prospectively included patients with histologically confirmed HGGs underwent a PET/CT and mpMRI including diffusion-weighted imaging (DWI: b0, b1000, ADC), contrast-enhanced T1-weighted imaging (T1-Gado), T2-weighted fluid-attenuated inversion recovery (T2Flair), and perfusion-weighted imaging with computation of relative cerebral blood volume (rCBV) and K2 maps. Nine radiation oncologists delineated the PET/CT and MRI sequences. Spatial similarity (Dice similarity coefficient: DSC) was calculated between the readers for each sequence. Impact of the DSC on progression-free survival (PFS) and overall survival (OS) was assessed using Kaplan-Meier curves and the log-rank test.
    RESULTS: The highest DSC mean values were reached for morphological sequences, ranging from 0.71 +/- 0.18 to 0.84 +/- 0.09 for T2Flair and T1Gado, respectively, while metabolic volumes defined by PET/CT achieved a mean DSC of 0.75 +/- 0.11. rCBV variability (mean DSC0.32 +/- 0.20) significantly impacted PFS (p = 0.02) and OS (p = 0.002).
    CONCLUSIONS: Our data suggest that the T1-Gado and T2Flair sequences were the most reproducible sequences, followed by PET/CT. Reproducibility for functional sequences was low, but rCBV inter-reader similarity significantly impacted PFS and OS.
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  • 文章类型: Journal Article
    在过去的几十年中,重建手术取得了重大进展,以降低头颈部癌症的发病率。现在,在80%的口腔癌患者中存在皮瓣以覆盖解剖学,功能,和化妆品的需求。然而,从手术到术后放疗(poRT)的跨学科创新转移的差距仍然具有挑战性。我们旨在为放射肿瘤学家在计划头颈部术后放疗时遇到的挑战提供跨学科的观点。
    进行了系统和严格的审查,以解决可能与poRT相关的外科和放射学优化领域。
    尽管有大量关于皮瓣技术和抢救手术的外科文献,确定了13个回顾性系列,在单纯手术或poRT之间间接比较皮瓣结局。这些低证据研究表明放疗加速皮瓣萎缩,纤维化,和骨坏死,并恶化功能结果。初步证据表明,肿瘤扩散发生在皮瓣-组织交界处,而不是在皮瓣中。一项前瞻性15例患者研究显示,31.3%与39.2%的皮瓣体积减少,无或有poRT。在国际共识中,专家们认识到需要优化皮瓣保护poRT以防止与皮瓣相关的功能退化和骨损伤。CT,MRI,和PET-CT模式显示出可能描绘天然组织和皮瓣之间的连接区域以进行皮瓣分割,并定量表征皮瓣特异性变化并将其与复发或并发症的模式相关联。
    PORT中的襟翼管理记录不足,但PORT似乎会损坏皮瓣。当前的知识空白强调了前瞻性皮瓣评估和跨学科试验的必要性,该试验通过保留皮瓣的poRT计划来研究皮瓣发病率的最小化。
    UNASSIGNED: Major advances have been made in reconstructive surgery in the last decades to reduce morbidity in head and neck cancer. Flaps are now present in 80% of patients with oral cavity cancer to cover anatomic, functional, and cosmetic needs. However, gaps in interdisciplinary innovation transfer from surgery to postoperative radiotherapy (poRT) remain challenging. We aimed to provide an interdisciplinary view of the challenges encountered by radiation oncologists in planning head and neck postoperative radiotherapy.
    UNASSIGNED: A systematic and critical review was conducted to address areas of optimization in surgery and radiology that may be relevant to poRT.
    UNASSIGNED: Despite extensive surgical literature on flap techniques and salvage surgery, 13 retrospective series were identified, where flap outcomes were indirectly compared between surgery alone or poRT. These low-evidence studies suggest that radiotherapy accelerates flap atrophy, fibrosis, and osteoradionecrosis and deteriorates functional outcomes. Preliminary evidence suggests that tumor spread occurs at the flap-tissue junction rather than in the flaps. One prospective 15-patient study showed 31.3% vs. 39.2% flap volume reduction without or with poRT. In an international consensus, experts recognized the needs for optimized flap-sparing poRT against flap-related functional deterioration and bone damage. CT, MRI, and PET-CT modalities show potential for the delineation of the junction area between native tissues and flap for flap segmentation and to characterize flap-specific changes quantitatively and correlate them with patterns of relapse or complications.
    UNASSIGNED: Flap management in poRT is insufficiently documented, but poRT seems to damage flaps. Current gaps in knowledge underscore the need for prospective flap assessment and interdisciplinary trials investigating flap morbidity minimization by flap-sparing poRT planning.
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  • 文章类型: Journal Article
    自适应放射治疗的特点是使用日常成像系统,例如CBCT(锥形束计算机断层扫描)图像以基于患者的日常解剖结构和位置重新优化治疗。通过系统地重新描绘每个部分的临床目标体积(CTV),目标轮廓不确定性的特征是随机分量,而不是纯粹的系统分量。这项工作的目标是确定轮廓误差的随机和系统贡献,并计算新的相关计划目标体积(PTV)安全裕度。分析了在VarianETHOS治疗系统上治疗的10名前列腺癌患者的169次放射治疗。在六个方向上计算了患者内和患者间的轮廓变化,认为前列腺是刚性的,非旋转体积。通过这样做,我们能够直接比较医生在每日CBCT图像上的描绘与在CT-sim和MRI上的初始描绘,并使用点的极坐标按方向对它们进行排序。然后将计算出的变异性用于基于VanHerk余量配方计算PTV余量。用随机和系统轮廓不确定性计算的总裕度为左侧2.7、2.4、5.6、4.8、4.9和3.6mm,对,前,后部,头颅和尾方向,分别。根据我们的结果,由于自适应划界过程,将划界不确定性分离为系统和随机贡献所提供的增益证明了PTV裕度在每个方向上降低到3到5毫米的合理性。
    Adaptive radiotherapy is characterized by the use of a daily imaging system, such as CBCT (Cone-Beam Computed Tomography) images to re-optimize the treatment based on the daily anatomy and position of the patient. By systematically re-delineating the Clinical Target Volume (CTV) at each fraction, target delineation uncertainty features a random component instead of a pure systematic. The goal of this work is to identify the random and systematic contributions of the delineation error and compute a new relevant Planning Target Volume (PTV) safety margin. 169 radiotherapy sessions from 10 prostate cancer patients treated on the Varian ETHOS treatment system have been analyzed. Intra-patient and inter-patient delineation variabilities were computed in six directions, by considering the prostate as a rigid, non-rotating volume. By doing so, we were able to directly compare the delineations done by the physicians on daily CBCT images with the initial delineation done on the CT-sim and MRI, and sort them by direction using the polar coordinates of the points. The computed variabilities were then used to compute a PTV margin based on Van Herk margin recipe. The total margin computed with random and systematic delineation uncertainties was of 2.7, 2.4, 5.6, 4.8, 4.9 and 3.6 mm in the left, right, anterior, posterior, cranial and caudal directions, respectively. According to our results, the gain offered by the separation of the delineation uncertainty into systematic and random contributions due to the adaptive delineation process justifies a reduction of the PTV margin down to 3 to 5 mm in every direction.
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  • 文章类型: English Abstract
    在这篇文章中,我们提出了上颌窦癌和鼻腔癌中原发肿瘤的术后临床目标体积的共识描述。这些指南是根据放射解剖学和这些癌症的自然史制定的。它们需要将计划CT与术前成像融合,以精确定位初始GTV,并结合使用几何和解剖学概念来描绘原发性肿瘤的临床目标体积。本文不讨论外部放射治疗的适应症(也不同时进行全身治疗),但着重于有放射治疗适应症时的靶区。
    In this article, we propose a consensus delineation of postoperative clinical target volumes for the primary tumour in maxillary sinus and nasal cavity cancers. These guidelines are developed based on radioanatomy and the natural history of those cancers. They require the fusion of the planning CT with preoperative imaging for accurate positioning of the initial GTV and the combined use of the geometric and anatomical concepts for the delineation of clinical target volume for the primary tumour. This article does not discuss the indications of external radiotherapy (nor concurrent systemic treatment) but focuses on target volumes when there is an indication for radiotherapy.
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