Data-driven analysis

  • 文章类型: Journal Article
    背景:这项研究旨在分析德国快速发展的数字健康应用生态系统(DigitaleGesundheitsanwendung;DiGA),受到2019年数字医疗法案的推动。现在,德国有超过7300万人可以使用DiGA,这些可规定的数字健康应用程序和基于Web的应用程序代表了医疗保健现代化的实质性进步,为患者和医疗保健提供者提供疾病管理和护理改善的数字解决方案。
    目标:通过数据驱动的方法,这项研究旨在解开DiGA市场动态的复杂性,经济因素,和临床证据,提供他们在过去几年的影响的见解。
    方法:分析来自一系列公共数据来源,包括DiGA目录,法定健康保险报告,应用商店反馈,和临床研究结果。
    结果:截至2024年7月1日,联邦药品和医疗器械研究所(BundesinstittfürArzneimittelundMedizinprodukte)列出了56个DiGA,分为35个永久申请和21个初步列出的申请。我们的研究结果表明,大多数DiGA的期限超过了预期的1年期限,以实现永久上市,反映了证明临床疗效所需的广泛努力。经济分析揭示了一个动态的定价格局,初始价格约为200欧元至700欧元(1欧元=1.07美元),3个月DiGA处方的平均中位数为514欧元。在谈判或仲裁委员会决定后,价格通常会降低50%,中位数为221欧元。处方数据提供了对DiGA接受度的宝贵见解,总处方从第一期的约41,000张跃升至最近一期报告期内的209,000张。前15名DiGA的分析,占总处方的82%,显示这些性能最佳的应用程序每天收到最少8到最多77张处方,原生应用和早期市场进入者实现更高的费率。来自所有35个永久列出的DiGA的临床证据表明,对随机对照试验的一致偏好,以验证主要终点。没有值得注意的使用数字医疗法案和相关法规中鼓励的替代研究设计。此外,所有评估的DiGA都专注于医疗福利,以健康状况改善为关键终点,提示在证明医疗保健影响方面未充分利用患者相关的结构和程序改进。
    结论:这项研究突出了DiGA行业的增长和挑战,建议未来研究的领域,例如探索新的研究设计以及与患者相关的结构和程序改进的潜在影响。对于DiGA制造商,强调提前进入市场的战略优势。总的来说,这篇论文强调了数字健康的发展态势,倡导对德国及其他地区的数字健康技术整合有细微差别的理解。
    BACKGROUND: This study aimed to analyze the rapidly evolving ecosystem of digital health applications (Digitale Gesundheitsanwendung; DiGAs) in Germany, spurred by the 2019 Digital Healthcare Act. With over 73 million people in Germany now having access to DiGAs, these prescribable digital health apps and web-based applications represent a substantial stride in health care modernization, supporting both patients and health care providers with digital solutions for disease management and care improvement.
    OBJECTIVE: Through a data-driven approach, this research aimed to unpack the complexities of DiGA market dynamics, economic factors, and clinical evidence, offering insights into their impact over the past years.
    METHODS: The analysis draws from a range of public data sources, including the DiGA directory, statutory health insurance reports, app store feedback, and clinical study results.
    RESULTS: As of July 1, 2024, there are 56 DiGAs listed by the Federal Institute for Drugs and Medical Devices (Bundesinstitut für Arzneimittel und Medizinprodukte), divided into 35 permanently and 21 preliminarily listed applications. Our findings reveal that a majority of DiGAs extend beyond the intended 1-year period to achieve permanent listing, reflecting the extensive effort required to demonstrate clinical efficacy. Economic analysis uncovered a dynamic pricing landscape, with initial prices ranging from approximately €200 to €700 (€1=US $1.07), averaging at a median of €514 for a 3-month DiGA prescription. Following negotiations or arbitration board decisions, prices typically see a 50% reduction, settling at a median of €221. Prescription data offer valuable insights into DiGA acceptance, with total prescriptions jumping from around 41,000 in the first period to 209,000 in the latest reporting period. The analysis of the top 15 DiGAs, representing 82% of the total prescriptions, shows that these best-performing apps receive from a minimum of 8 to a maximum of 77 daily prescriptions, with native apps and early market entrants achieving higher rates. Clinical evidence from all 35 permanently listed DiGAs indicates a uniform preference for randomized controlled trials to validate primary end points, with no noteworthy use of alternative study designs encouraged in the Digital Healthcare Act and related regulations. Moreover, all evaluated DiGAs focused on medical benefits, with health status improvement as a key end point, suggesting an underuse of patient-relevant structural and procedural improvement in demonstrating health care impact.
    CONCLUSIONS: This study highlights the growth and challenges within the DiGA sector, suggesting areas for future research, such as the exploration of new study designs and the potential impact of patient-relevant structural and procedural improvements. For DiGA manufacturers, the strategic advantage of early market entry is emphasized. Overall, this paper underscores the evolving landscape of digital health, advocating for a nuanced understanding of digital health technology integration in Germany and beyond.
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  • 文章类型: Journal Article
    已经有许多研究使用效应导向分析(EDA)来识别水源和饮用水中存在的关键有毒物质,但是这些研究都没有考虑到代谢激活的影响。这项研究开发了一种综合方法,包括基于体外代谢激活系统的预处理过程,基于浓度依赖性转录组(CDT)的综合生物学效应评估,和基于非目标化学分析(NTA)的化学特征识别,评估代谢后毒性作用的变化和化学成分的差异。进一步构建了代谢产物和前体物质匹配模型以及数据驱动的鉴定方法,以鉴定长江饮用水样品中的有毒代谢物和关键有毒前体物质。新陈代谢后,代谢样品在总体生物学效价方面显示出毒性降低的总体趋势(平均值:3.2倍).然而,代谢激活导致某些类型的毒性作用增加,包括切除修复等途径,失配修复,内质网中的蛋白质加工,核苷酸切除修复,和DNA复制。同时,代谢样品显示代谢后的峰数量和平均峰面积减少(17.8%),虽然整体极性,亲水性,平均分子量略有增加(10.3%)。基于代谢物和前体的匹配模型和数据驱动的识别方法,32种化学物质被有效地确定为关键有毒物质,作为解释不同转录组生物效应的主要贡献者,如细胞成分,发展,和DNA损伤有关,包括15个工业化合物,7PPCPs,6种农药,4天然产品这项研究避免了有毒代谢物的结构阐明过程,并可以根据MS光谱将它们直接追踪到前体,为代谢物关键有毒污染物的鉴定提供了新思路。
    There have been numerous studies using effect-directed analysis (EDA) to identify key toxic substances present in source and drinking water, but none of these studies have considered the effects of metabolic activation. This study developed a comprehensive method including a pretreatment process based on an in vitro metabolic activation system, a comprehensive biological effect evaluation based on concentration-dependent transcriptome (CDT), and a chemical feature identification based on nontarget chemical analysis (NTA), to evaluate the changes in the toxic effects and differences in the chemical composition after metabolism. Models for matching metabolites and precursors as well as data-driven identification methods were further constructed to identify toxic metabolites and key toxic precursor substances in drinking water samples from the Yangtze River. After metabolism, the metabolic samples showed a general trend of reduced toxicity in terms of overall biological potency (mean: 3.2-fold). However, metabolic activation led to an increase in some types of toxic effects, including pathways such as excision repair, mismatch repair, protein processing in endoplasmic reticulum, nucleotide excision repair, and DNA replication. Meanwhile, metabolic samples showed a decrease (17.8%) in the number of peaks and average peak area after metabolism, while overall polarity, hydrophilicity, and average molecular weight increased slightly (10.3%). Based on the models for matching of metabolites and precursors and the data-driven identification methods, 32 chemicals were efficiently identified as key toxic substances as main contributors to explain the different transcriptome biological effects such as cellular component, development, and DNA damage related, including 15 industrial compounds, 7 PPCPs, 6 pesticides, and 4 natural products. This study avoids the process of structure elucidation of toxic metabolites and can trace them directly to the precursors based on MS spectra, providing a new idea for the identification of key toxic pollutants of metabolites.
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  • 文章类型: Journal Article
    非人灵长类动物(NHP)是不可缺少的动物模型,由于灵长类动物行为库的连续性,包括人类。然而,迄今为止,实验室水平的行为评估受到限制。采用三维(3D)姿态估计的应用以及后续分析方法的最佳集成,我们证明了我们基于人工智能(AI)的方法已经成功地破译了行为学,认知,和普通猕猴桃的自然行为的病理特征。通过应用用大规模数据集训练的多个深度神经网络,我们建立了一个评估系统,可以重建和估计the猴的3D姿势,一种小型NHP,适用于分析实验室设置中的复杂自然行为。我们进一步开发了下游分析方法,以量化运动运动学以外的各种行为参数。我们通过在3D姿势上使用时空过滤器自动检测食物共享行为,揭示了雄性和雌性the猴的不同父母角色。使用递归神经网络来分析社交互动过程中的3D姿势时间序列数据,我们还发现,金刚猴根据他人的内部状态调整自己的行为,这不是直接观察到的,但可以从其他行为的顺序推断出来。此外,完全无监督的方法使我们能够在帕金森病模型中检测到一年内逐渐出现的症状行为.AI驱动的自然行为分析方法的高通量和多功能性将为神经科学研究开辟新的途径,处理NHP中社会和病理生理行为的大数据分析。
    Nonhuman primates (NHPs) are indispensable animal models by virtue of the continuity of behavioral repertoires across primates, including humans. However, behavioral assessment at the laboratory level has so far been limited. Employing the application of three-dimensional (3D) pose estimation and the optimal integration of subsequent analytic methodologies, we demonstrate that our artificial intelligence (AI)-based approach has successfully deciphered the ethological, cognitive, and pathological traits of common marmosets from their natural behaviors. By applying multiple deep neural networks trained with large-scale datasets, we established an evaluation system that could reconstruct and estimate the 3D poses of the marmosets, a small NHP that is suitable for analyzing complex natural behaviors in laboratory setups. We further developed downstream analytic methodologies to quantify a variety of behavioral parameters beyond motion kinematics. We revealed the distinct parental roles of male and female marmosets through automated detections of food-sharing behaviors using a spatial-temporal filter on 3D poses. Employing a recurrent neural network to analyze 3D pose time series data during social interactions, we additionally discovered that marmosets adjusted their behaviors based on others\' internal state, which is not directly observable but can be inferred from the sequence of others\' actions. Moreover, a fully unsupervised approach enabled us to detect progressively appearing symptomatic behaviors over a year in a Parkinson\'s disease model. The high-throughput and versatile nature of an AI-driven approach to analyze natural behaviors will open a new avenue for neuroscience research dealing with big-data analyses of social and pathophysiological behaviors in NHPs.
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  • 文章类型: Journal Article
    在本研究中,我开发并测试了R模块,以在公共卫生研究中的多层次建模背景下探索最佳模型。我开发的模块,探索。模型,将从一组候选预测因子生成的所有可能的候选模型与信息标准进行比较,Akaike信息准则(AIC),和贝叶斯信息准则(BIC),多处理。对于测试,我跑探索。在之前的三项公共卫生研究中分析了具有数据集的模型,假设候选模型具有不同程度的模型复杂度。这三项研究考察了心理健康的预测因素,遵守预防措施,和COVID-19大流行期间的疫苗意图。在进行模型探索和探索之后。模型,我使用计算的模型BayesFactors交叉验证了提名结果,以检查模型探索是否准确执行。结果表明,探索。使用AIC和BIC的模型可以提名最佳候选模型,并且此类提名结果得到计算模型BayesFactors的支持。特别是,在模型贝叶斯因子方面,所有确定的模型都优于完整模型。此外,通过采用AIC和BIC进行多处理,探索。模型需要比模型贝叶斯因子计算更短的处理时间。这些结果表明,探索。模型是可靠的,有效,在健康心理学和教育研究中,使用从多个小组收集的数据集进行数据驱动的模型探索的可行工具。
    In the present study, I developed and tested an R module to explore the best models within the context of multilevel modeling in research in public health. The module that I developed, explore.models, compares all possible candidate models generated from a set of candidate predictors with information criteria, Akaike information criterion (AIC), and Bayesian information criterion (BIC), with multiprocessing. For testing, I ran explore.models with datasets analyzed in three previous studies in public health, which assumed candidate models with different degrees of model complexity. These three studies examined the predictors of psychological well-being, compliance with preventive measures, and vaccine intent during the COVID-19 pandemic. After conducting model exploration with explore.models, I cross-validated the nomination results with calculated model Bayes Factors to examine whether the model exploration was performed accurately. The results suggest that explore.models using AIC and BIC can nominate best candidate models and such nomination outcomes are supported by the calculated model Bayes Factors. In particular, all the identified models are superior to the full models in terms of model Bayes Factors. Also, by employing AIC and BIC with multiprocessing, explore.models requires a shorter processing time than model Bayes Factor calculations. These results indicate that explore.models is a reliable, valid, and feasible tool to conduct data-driven model exploration with datasets collected from multiple groups in research on health psychology and education.
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  • 文章类型: Journal Article
    影像学的进展,分割,和跟踪导致常规生成大型和复杂的显微镜数据集。需要新工具来处理此“表型组学”类型的数据。细胞方度分析工具(cellPLATO)是一种基于Python的分析软件,旨在根据细胞形态和运动性的聚类特征对细胞行为进行测量和分类。在分割和跟踪后使用,该工具从每个时间点的每个单元中提取特征,使用它们将细胞分离为降维的行为亚型。结果细胞轨迹描述了每个时间点的“行为ID”,相似性分析允许将行为序列分组为具有分配ID的离散轨迹。这里,我们使用cellPLATO研究IL-15在ICAM-1或VCAM-1上调节人NK细胞迁移中的作用。我们根据NK细胞的形状和单个时间点之间的迁移动力学发现了8个行为亚群,和4个轨迹基于这些行为随时间的序列。因此,使用cellPLATO,我们显示IL-15增加细胞迁移行为之间的可塑性,并且不同的整合素配体诱导不同形式的NK细胞迁移。
    Advances in imaging, segmentation and tracking have led to the routine generation of large and complex microscopy datasets. New tools are required to process this \'phenomics\' type data. Here, we present \'Cell PLasticity Analysis Tool\' (cellPLATO), a Python-based analysis software designed for measurement and classification of cell behaviours based on clustering features of cell morphology and motility. Used after segmentation and tracking, the tool extracts features from each cell per timepoint, using them to segregate cells into dimensionally reduced behavioural subtypes. Resultant cell tracks describe a \'behavioural ID\' at each timepoint, and similarity analysis allows the grouping of behavioural sequences into discrete trajectories with assigned IDs. Here, we use cellPLATO to investigate the role of IL-15 in modulating human natural killer (NK) cell migration on ICAM-1 or VCAM-1. We find eight behavioural subsets of NK cells based on their shape and migration dynamics between single timepoints, and four trajectories based on sequences of these behaviours over time. Therefore, by using cellPLATO, we show that IL-15 increases plasticity between cell migration behaviours and that different integrin ligands induce different forms of NK cell migration.
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  • 文章类型: Journal Article
    为了提高SF6高压断路器(HVCB)运行状态评估的准确性,并制定明智的维护策略,本研究介绍了在集成数据驱动分析(IDDA)模型中接地的SF6HVCB的运行状态评估方法。引入相对降解权重(RDW)作为量化有关SF6HVCB操作条件的不同指标的相对重要性的度量。数据驱动模型,建立在关键因素稳定性(CFS)基础上,将环境指标转化为定量计算。此外,设计了一种优化的模糊推理(OFI)系统,以简化系统架构并提高连续指标的处理速度。最终,所提出的模型的有效性通过验证得到证实,实例分析的结果强调,与现有的分析方法相比,所提出的方法不仅提高了评估的准确性,而且还为在不同的组件中确定维护顺序的优先级提供了可靠的基础。
    To enhance the precision of evaluating the operational status of SF6 high-voltage circuit breakers (HVCBs) and devise judicious maintenance strategies, this study introduces an operational state assessment method for SF6 HVCBs grounded in the integrated data-driven analysis (IDDA) model. The relative degradation weight (RDW) is introduced as a metric for quantifying the relative significance of distinct indicators concerning the operational condition of SF6 HVCBs. A data-driven model, founded on critical factor stability (CFS), is formulated to convert environmental indicators into quantitative computations. Furthermore, an optimized fuzzy inference (OFI) system is devised to streamline the system architecture and enhance the processing speed of continuous indicators. Ultimately, the efficacy of the proposed model is substantiated through validation, and results from instance analyses underscore that the presented approach not only attains heightened accuracy in assessment compared to extant analytical methodologies but also furnishes a dependable foundation for prioritizing maintenance sequences across diverse components.
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  • 文章类型: Journal Article
    细菌P450细胞色素(BacCYPs)是多种含血红素的蛋白质,负责在多种底物上进行氧化反应。有助于生产具有无限生物技术潜力的有价值的天然产品。虽然微生物基因组的测序提供了丰富的BacCYP序列,功能表征滞后,阻碍了我们对他们角色的理解。本研究采用综合方法预测BacCYP底物特异性,弥合序列和功能之间的差距。我们采用了一种结合序列和功能数据分析的综合方法,基因组背景探索,三维结构建模与分子对接,和系统发育聚类。本研究首先深入分析了BacCYP序列的多样性和结构特征,揭示了活性位点的保守基序和复发残基。系统发育分析根据序列相似性鉴定了BacCYP家族中的不同群体。然而,我们的研究表明,单独的序列并不能一致地预测底物特异性,需要更多的视角。这项研究深入研究了BacCYPs的遗传背景,利用邻近的基因信息来推断潜在的底物,一种在许多情况下被证明非常有效的方法。分子对接用于评估BacCYP-底物相互作用,确认潜在的底物并提供对选择性的见解。最后,提出了一种预测BacCYP底物的综合策略,涉及所有评估的方法。通过两个案例研究证明了该策略的有效性,突出了它发现底物的潜力。
    Bacterial P450 cytochromes (BacCYPs) are versatile heme-containing proteins responsible for oxidation reactions on a wide range of substrates, contributing to the production of valuable natural products with limitless biotechnological potential. While the sequencing of microbial genomes has provided a wealth of BacCYP sequences, functional characterization lags behind, hindering our understanding of their roles. This study employs a comprehensive approach to predict BacCYP substrate specificity, bridging the gap between sequence and function. We employed an integrated approach combining sequence and functional data analysis, genomic context exploration, 3D structural modeling with molecular docking, and phylogenetic clustering. The research begins with an in-depth analysis of BacCYP sequence diversity and structural characteristics, revealing conserved motifs and recurrent residues in the active site. Phylogenetic analysis identifies distinct groups within the BacCYP family based on sequence similarity. However, our study reveals that sequence alone does not consistently predict substrate specificity, necessitating additional perspectives. The study delves into the genetic context of BacCYPs, utilizing neighboring gene information to infer potential substrates, a method proven very effective in many cases. Molecular docking is employed to assess BacCYP-substrate interactions, confirming potential substrates and providing insights into selectivity. Finally, a comprehensive strategy is proposed for predicting BacCYP substrates, involving all the evaluated approaches. The effectiveness of this strategy is demonstrated with two case studies, highlighting its potential for substrate discovery.
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  • 文章类型: Journal Article
    水传播的病毒流行病是对公众健康的主要威胁。对废水回收的兴趣日益增加,突出了了解与潜在微生物危害相关的健康风险的重要性。特别是与人类直接接触的再用水。这项研究的重点是识别城市废水中的病毒流行模式,再用于娱乐应用,基于长期,2000-2021年期间的空间明确的全球文献数据,并使用完善的定量微生物风险评估方法对来自多个暴露途径的人类健康风险进行建模。城市废水中的全球中位病毒载量从7.92×104到1.4×106GCL-1,按以下升序排列:人腺病毒(HAdV),诺如病毒(NoV)GII,肠道病毒(EV),NoVGI,轮状病毒(RV),和严重急性呼吸道综合征冠状病毒2(SARS-CoV-2)。二级或三级废水处理后,NoVGI,NoVGII,EV,RV显示出相对较高且更稳定的对数减少值,中位数均高于0.8(84%),而SARS-CoV-2和HAdV显示相对较低的减少,中位数从0.33(53%)到0.55(72%)不等。随后的消毒过程有效地将病毒去除增强到超过0.89-log(87%)。再生娱乐水中病毒相关胃肠道疾病和急性发热性呼吸道疾病的预测事件概率超过了世界卫生组织推荐的娱乐风险基准(5%和1.9%,分别)。总的来说,我们的研究结果提供了与将废水用于娱乐目的相关的健康风险的见解,并强调需要建立一个监管框架,以确保再生水域的安全管理。
    Waterborne viral epidemics are a major threat to public health. Increasing interest in wastewater reclamation highlights the importance of understanding the health risks associated with potential microbial hazards, particularly for reused water in direct contact with humans. This study focused on identifying viral epidemic patterns in municipal wastewater reused for recreational applications based on long-term, spatially explicit global literature data during 2000-2021, and modelled human health risks from multiple exposure pathways using a well-established quantitative microbial risk assessment methodology. Global median viral loads in municipal wastewater ranged from 7.92 × 104 to 1.4 × 106 GC L-1 in the following ascending order: human adenovirus (HAdV), norovirus (NoV) GII, enterovirus (EV), NoV GI, rotavirus (RV), and severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). Following secondary or tertiary wastewater treatment, NoV GI, NoV GII, EV, and RV showed a relatively higher and more stable log reduction value with medians all above 0.8 (84%), whereas SARS-CoV-2 and HAdV showed a relatively lower reduction, with medians ranging from 0.33 (53%) to 0.55 (72%). A subsequent disinfection process effectively enhanced viral removal to over 0.89-log (87%). The predicted event probability of virus-related gastrointestinal illness and acute febrile respiratory illnesses in reclaimed recreational water exceeded the World Health Organization recommended recreational risk benchmark (5% and 1.9%, respectively). Overall, our results provided insights on health risks associated with reusing wastewater for recreational purposes and highlighted the need for establishing a regulatory framework ensuring the safety management of reclaimed waters.
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  • 文章类型: Preprint
    影像学的进展,细胞分割,和细胞追踪现在常规产生的显微镜数据集的大小和复杂性与转录组学或蛋白质组学相当。需要新工具来处理此“表型组学”类型的数据。细胞方度分析工具(cellPLATO)是一种基于Python的分析软件,旨在根据细胞形态和运动性参数的聚类对各种细胞行为进行测量和分类。cellPLATO用于活细胞显微镜数据中的细胞分割和跟踪。该工具从每个时间点的每个细胞中提取形态和运动指标,在使用它们将细胞分离为降维的行为亚型之前。对于每个时间点的每个单元,所得到的单元轨道具有对应于它们在序列中随时间变化的行为的\'行为ID\'。相似性分析允许将行为序列分组为具有分配的ID的离散轨迹。轨迹和潜在的行为为每个实验条件生成一个表型指纹,和代表性细胞在数学上被识别并以图形方式显示,以便人类理解每个亚型。这里,我们使用cellPLATO研究IL-15在ICAM-1或VCAM-1上调节NK细胞迁移中的作用。我们根据NK细胞的形状和迁移动力学发现了8个行为亚群,和4种行为轨迹。因此,使用cellPLATO,我们显示IL-15增加细胞迁移行为之间的可塑性,并且不同的整合素配体诱导不同形式的NK细胞迁移。
    Advances in imaging, cell segmentation, and cell tracking now routinely produce microscopy datasets of a size and complexity comparable to transcriptomics or proteomics. New tools are required to process this \'phenomics\' type data. Cell PLasticity Analysis TOol (cellPLATO) is a Python-based analysis software designed for measurement and classification of diverse cell behaviours based on clustering of parameters of cell morphology and motility. cellPLATO is used after segmentation and tracking of cells from live cell microscopy data. The tool extracts morphological and motility metrics from each cell per timepoint, before being using them to segregate cells into behavioural subtypes with dimensionality reduction. Resultant cell tracks have a \'behavioural ID\' for each cell per timepoint corresponding to their changing behaviour over time in a sequence. Similarity analysis allows the grouping of behavioural sequences into discrete trajectories with assigned IDs. Trajectories and underlying behaviours generate a phenotypic fingerprint for each experimental condition, and representative cells are mathematically identified and graphically displayed for human understanding of each subtype. Here, we use cellPLATO to investigate the role of IL-15 in modulating NK cell migration on ICAM-1 or VCAM-1. We find 8 behavioural subsets of NK cells based on their shape and migration dynamics, and 4 trajectories of behaviour. Therefore, using cellPLATO we show that IL-15 increases plasticity between cell migration behaviours and that different integrin ligands induce different forms of NK cell migration.
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  • 文章类型: Journal Article
    在微型生物反应器系统(MBR)中间歇性推注给大肠杆菌培养物极大地影响了细胞代谢。团注导致临时底物过剩和瞬时氧限制,这引发了抑制性副产物的形成。由于注入基质后的需氧量很高,溶解氧张力(DOT)信号表现出负脉冲。该贡献描述并分析了大肠杆菌微型生物反应器培养中的这种DOT反应。除了获取有关培养条件的信息外,在分析中观察到DOT信号的独特响应行为。该响应仅在每生物质单位的稀释比高于某一阈值时出现。该分析强调了代谢适应行为与文献中未报道的新观察到的DOT信号片段之间的合理关系。提出了将特定DOT片段与特定代谢状态联系起来的假设。定量分析和机械模型模拟支持该假设,并显示了从DOT信号获得细胞生理和生长参数的可能性。
    Intermittent bolus feeding for E. coli cultivations in minibioreactor systems (MBRs) profoundly affects the cell metabolism. Bolus feeding leads to temporal substrate surplus and transient oxygen limitation, which triggers the formation of inhibitory byproducts. Due to the high oxygen demand right after the injection of the substrate, the dissolved oxygen tension (DOT) signal exhibits a negative pulse. This contribution describes and analyzes this DOT response in E. coli minibioreactor cultivations. In addition to gaining information on culture conditions, a unique response behavior in the DOT signal was observed in the analysis. This response appeared only at a dilution ratio per biomass unit higher than a certain threshold. The analysis highlights a plausible relationship between a metabolic adaptation behavior and the newly observed DOT signal segment not reported in the literature. A hypothesis that links particular DOT segments to specific metabolic states is proposed. The quantitative analysis and mechanistic model simulations support this hypothesis and show the possibility of obtaining cell physiological and growth parameters from the DOT signal.
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