Data Visualization

数据可视化
  • 文章类型: Journal Article
    背景:数据仪表板是发布的工具,用于呈现可视化;它们越来越多地用于显示有关行为健康的数据,健康的社会决定因素,以及慢性和传染病风险,以告知或支持公共卫生工作。仪表板可以是社区使用的基于证据的方法,以影响特定人群的医疗保健决策。尽管广泛使用,关于如何在公共卫生领域最好地设计和使用仪表板的证据是有限的。还有一个明显的缺乏研究来检查和记录社区环境中仪表板的复杂性和异质性。
    目的:参与社区应对阿片类药物过量危机的社区利益相关者可以从使用数据仪表板进行决策中受益。作为治愈社区(CTH)干预的一部分,社区数据仪表板是为利益相关者创建的,以支持决策。我们评估了利益相关者对CTH仪表板用于决策的可用性和使用的看法。
    方法:我们在2021年6月至7月之间对CTH仪表板的使用进行了混合方法评估。我们管理了系统可用性量表(SUS),并对美国4个州的33个社区的用户进行了半结构化小组访谈。SUS包括10个测量可用性的五个李克特量表问题,每个得分从0到4。面试指南由技术采用模型(TAM)提供信息,并侧重于感知的有用性,感知到的易用性,打算使用,和上下文因素。
    结果:总体而言,CTH仪表板的62个用户完成了SUS和访谈。SUS评分(总平均值73,SD4.6)表明CTH仪表板在可用性的可接受范围内。从定性的采访数据来看,我们在TAM的4个维度中归纳地创建了子主题,以将利益相关者对仪表板的有用性和易用性的看法进行上下文化,他们使用的意图,和上下文因素。这些数据还突出了知识方面的差距,设计,和使用,这可以帮助集中精力改善利益相关者对仪表板的使用和理解。
    结论:我们介绍了我们国家小组确定的一系列优先差距,并列出了为社区利益相关者改进数据仪表板设计和使用所吸取的一系列经验教训。我们对SUS和TAM的新颖应用的发现提供了见解,并突出了重要的差距和经验教训,为决策社区利益相关者提供了数据仪表板的设计。
    背景:ClinicalTrials.govNCT04111939;https://clinicaltrials.gov/study/NCT04111939。
    BACKGROUND: Data dashboards are published tools that present visualizations; they are increasingly used to display data about behavioral health, social determinants of health, and chronic and infectious disease risks to inform or support public health endeavors. Dashboards can be an evidence-based approach used by communities to influence decision-making in health care for specific populations. Despite widespread use, evidence on how to best design and use dashboards in the public health realm is limited. There is also a notable dearth of studies that examine and document the complexity and heterogeneity of dashboards in community settings.
    OBJECTIVE: Community stakeholders engaged in the community response to the opioid overdose crisis could benefit from the use of data dashboards for decision-making. As part of the Communities That HEAL (CTH) intervention, community data dashboards were created for stakeholders to support decision-making. We assessed stakeholders\' perceptions of the usability and use of the CTH dashboards for decision-making.
    METHODS: We conducted a mixed methods assessment between June and July 2021 on the use of CTH dashboards. We administered the System Usability Scale (SUS) and conducted semistructured group interviews with users in 33 communities across 4 states of the United States. The SUS comprises 10 five-point Likert-scale questions measuring usability, each scored from 0 to 4. The interview guides were informed by the technology adoption model (TAM) and focused on perceived usefulness, perceived ease of use, intention to use, and contextual factors.
    RESULTS: Overall, 62 users of the CTH dashboards completed the SUS and interviews. SUS scores (grand mean 73, SD 4.6) indicated that CTH dashboards were within the acceptable range for usability. From the qualitative interview data, we inductively created subthemes within the 4 dimensions of the TAM to contextualize stakeholders\' perceptions of the dashboard\'s usefulness and ease of use, their intention to use, and contextual factors. These data also highlighted gaps in knowledge, design, and use, which could help focus efforts to improve the use and comprehension of dashboards by stakeholders.
    CONCLUSIONS: We present a set of prioritized gaps identified by our national group and list a set of lessons learned for improved data dashboard design and use for community stakeholders. Findings from our novel application of both the SUS and TAM provide insights and highlight important gaps and lessons learned to inform the design of data dashboards for use by decision-making community stakeholders.
    BACKGROUND: ClinicalTrials.gov NCT04111939; https://clinicaltrials.gov/study/NCT04111939.
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  • 文章类型: Journal Article
    我们分析行为金融学领域的主要期刊,以确定该领域最常用的关键词以及它们是如何演变的。使用2000年至2020年之间的数据的关键字分析以及数据映射和可视化工具,构建了该学科的动态图。这项研究评估了该领域的最新技术,主要讨论议题,所讨论的概念之间出现的关系,和新出现的感兴趣的问题。样品包括3876件,包括15859个来自负责学科成长的期刊的关键词,即行为与实验经济学杂志,行为与实验金融学杂志,经济心理学杂志,行为金融学杂志,和行为金融学综述。在分析期间,我们的结果描绘了一个活跃的区域,并突出了实验在该领域发挥的突出作用。揭示了两种相关但不同的行为金融学研究流。
    We analyze leading journals in behavioral finance to identify the most-used keywords in the area and how they have evolved. Using keyword analysis of data between 2000 and 2020 as well as data mapping and visualization tools, a dynamic map of the discipline was constructed. This study assesses the state-of-the-art of the field, main topics of discussion, relationships that arise between the concepts discussed, and emerging issues of interest. The sample comprises 3876 pieces, including 15859 keywords from journals responsible for the growth of the discipline, namely the Journal of Behavioral and Experimental Economics, Journal of Behavioral and Experimental Finance, Journal of Economic Psychology, Journal of Behavioral Finance, and Review of Behavioral Finance. During the period analyzed, our results depict a lively area and highlight the prominent role that experiments play in the field. Two related but different streams of behavioral finance research are revealed.
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  • 文章类型: Journal Article
    背景:以用户为中心的数据可视化可以减少医生的认知负荷并支持临床决策。为了便于为单个患者健康数据汇总选择适当的可视化,本范围审查提供了可能的可视化技术和相应报告的以用户为中心的设计阶段的文献概述.
    方法:出版物数据库PubMed,WebofScience,从2017年到2022年,搜索了IEEEXplore和ACM数字图书馆的相关文章。
    结果:在筛选的777篇文章中,78篇文章被纳入最终分析。最常用的可视化技术是表格,散点图-线时间线,文本和事件时间线,确定了24种其他可视化技术。以用户为中心的设计过程的测试阶段报告最频繁。
    结论:这项范围审查可以通过揭示可能的可视化技术的设计空间来支持开发人员为单个患者的健康数据选择合适的可视化。
    BACKGROUND: User-centered data visualizations can reduce physician cognitive load and support clinical decision making. To facilitate the selection of appropriate visualizations for single patient health data summaries, this scoping review provides a literature overview of possible visualization techniques and the corresponding reported user-centered design phases.
    METHODS: The publication databases PubMed, Web of Science, IEEE Xplore and ACM Digital Library were searched for relevant articles from 2017 to 2022.
    RESULTS: Of the 777 articles screened, 78 articles were included in the final analysis. The most commonly used visualization techniques are table, scatterplot-line timeline, text and event timelines, with 24 other visualization techniques identified. The testing phase of the user centered design process is reported most frequently.
    CONCLUSIONS: This scoping review can support developers in the selection of suitable visualizations for single patient health data by revealing the design space of possible visualization techniques.
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  • 文章类型: Journal Article
    对大量时空数据的分析是流行病学研究中的基本挑战。随着此类数据的数量和复杂性的增加,自动分析方法,比如统计,数据挖掘,机器学习,等。,可用于提取有用的信息。虽然这些方法已被证明是有效的,他们需要对所寻求的信息的先验知识,和一些有趣的见解的数据可能会错过。为了弥合这个差距,信息可视化提供了一套技术,不仅用于呈现已知信息,而且还在没有事先提出假设的情况下探索数据。在本文中,我们介绍EpidDataExplorer(EDE),一种可视化工具,可以探索时空流行病学数据。EDE可以轻松比较不同地理区域和时间的指标和趋势。它通过随时可用的预加载数据集以及用户选择的数据集来促进这种探索。该工具还提供了一个安全的体系结构,可轻松导入新数据集,同时确保机密性。在使用与COVID-19流行相关的数据的两个用例中,我们展示了实施封锁措施对流动性的重大影响,以及EDE如何评估COVID-19传播与天气状况之间的相关性。
    The analysis of large sets of spatio-temporal data is a fundamental challenge in epidemiological research. As the quantity and the complexity of such kind of data increases, automatic analysis approaches, such as statistics, data mining, machine learning, etc., can be used to extract useful information. While these approaches have proven effective, they require a priori knowledge of the information being sought, and some interesting insights into the data may be missed. To bridge this gap, information visualization offers a set of techniques for not only presenting known information, but also exploring data without having a hypothesis formulated beforehand. In this paper, we introduce Epid Data Explorer (EDE), a visualization tool that enables exploration of spatio-temporal epidemiological data. EDE allows easy comparisons of indicators and trends across different geographical areas and times. It facilitates this exploration through ready-to-use pre-loaded datasets as well as user-chosen datasets. The tool also provides a secure architecture for easily importing new datasets while ensuring confidentiality. In two use cases using data associated with the COVID-19 epidemic, we demonstrate the substantial impact of implemented lockdown measures on mobility and how EDE allows assessing correlations between the spread of COVID-19 and weather conditions.
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  • 文章类型: Journal Article
    在探索细胞外囊泡(EV)在骨关节炎(OA)的诊断和治疗中的潜在应用方面,广泛的研究取得了重大进展。然而,目前缺乏文献计量学的研究。在这项研究中,在过去的二十年中,我们完成了对OA中EV研究的新文献计量分析。具体来说,我们确定了在2003年1月1日至2022年12月31日期间获得的354份相关出版物.我们还提供了关于出版国家或地区的发行信息的描述,相关机构,期刊,作者,引文,和关键词。主要研究重点包括细胞外囊泡在OA诊断中的作用。活性成分的交付,治疗策略,和软骨修复。这些发现突出了最新的研究前沿和新兴领域,为进一步研究细胞外囊泡在骨关节炎中的应用提供有价值的见解。
    Extensive research has made significant progress in exploring the potential application of extracellular vesicles (EV) in the diagnosis and treatment of osteoarthritis (OA). However, there is current a lack of study on bibliometrics. In this study, we completed a novel bibliometric analysis of EV research in OA over the past two decades. Specifically, we identified a total of 354 relevant publications obtained between January 1, 2003 and December 31, 2022. We also provided a description of the distribution information regarding the countries or regions of publication, institutions involved, journals, authors, citations, and keywords. The primary research focuses encompassed the role of extracellular vesicles in the diagnosis of OA, delivery of active ingredients, treatment strategies, and cartilage repair. These findings highlight the latest research frontiers and emerging areas, providing valuable insights for further investigations on the application of extracellular vesicles in the context of osteoarthritis.
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  • 文章类型: Journal Article
    生物人类学的中心目标是将环境变化与宿主生理差异联系起来,生物学健康,和进化。微生物组是研究宿主环境变化如何影响健康结果的有价值的途径。虽然有许多资源可以学习与微生物组样本收集相关的方法,实验室分析,和基因测序,致力于帮助研究人员浏览密集的生物信息学和统计方法来分析微生物组数据的研究较少。那些确实存在的问题很少与生物人类学有关,而是经常关注人类生物医学。为了解决这个差距,我们扩展现有的教程,并提供“路线图”,以帮助生物人类学家理解,选择,并部署最适合其特定研究问题的数据分析和可视化方法。利用现有的粪便样本数据集和从埃塞俄比亚Simien山国家公园的野生geladas收集的调查数据(Baniel等人。,2021),本文指导研究人员回答与跨宿主和环境因素的肠道微生物组变化有关的三个问题。通过提供解释,例如,以及不同分析方法的可重复工作流程,我们超越了在人类学研究中考虑微生物组的理论利益,而是向研究人员提供了将微生物组科学应用于其工作的指南。本文使生物人类学家更容易接触到微生物组科学,并为继续研究微生物组在生态学中的作用铺平了道路。进化,以及人类和非人类灵长类动物的健康。
    A central goal of biological anthropology is connecting environmental variation to differences in host physiology, biology, health, and evolution. The microbiome represents a valuable pathway for studying how variation in host environments impacts health outcomes. While there are many resources for learning about methods related to microbiome sample collection, laboratory analyses, and genetic sequencing, there are fewer dedicated to helping researchers navigate the dense portfolio of bioinformatics and statistical approaches for analyzing microbiome data. Those that do exist are rarely related to questions in biological anthropology and instead are often focused on human biomedicine. To address this gap, we expand on existing tutorials and provide a \"road map\" to aid biological anthropologists in understanding, selecting, and deploying the data analysis and visualization methods that are most appropriate for their specific research questions. Leveraging an existing dataset of fecal samples and survey data collected from wild geladas living in Simien Mountains National Park in Ethiopia (Baniel et al., 2021), this paper guides researchers toward answering three questions related to variation in the gut microbiome across host and environmental factors. By providing explanations, examples, and a reproducible workflow for different analytic methods, we move beyond the theoretical benefits of considering the microbiome within anthropological research and instead present researchers with a guide for applying microbiome science to their work. This paper makes microbiome science more accessible to biological anthropologists and paves the way for continued research into the microbiome\'s role in the ecology, evolution, and health of human and non-human primates.
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  • 文章类型: Journal Article
    质谱成像(MSI)以高灵敏度和分子选择性提供有关复杂样品中分子空间定位的信息。虽然逐点数据采集,其中在网格图案中的预定义点处获取质谱,在MSI中很常见,几种MSI技术使用线性数据采集。在线性模式下,成像表面沿着连续的平行线连续采样,并且MSI数据作为跨样品的线扫描的集合被获取。此外,除了获取完整质谱的标准成像模式外,已经开发了其他采集模式来增强分子特异性,能够分离等量异位和同分异构的物种,并提高灵敏度,以促进低丰度物种的成像。这些方法,包括MS2和MS3模式下的MS/MS-MSI,多反应监测(MRM)-MSI,和离子迁移谱(IMS)-MSI都展示了它们的能力,但其更广泛的实施受到现有MSI分析软件的限制。这里,我们介绍MSIGen,一个开源的Python包,用于在包含MS1、MS2、MRM、和IMS数据,可在https://github.com/LabLaskin/MSIGen上获得。该软件包支持多种特定于供应商的开源数据格式,并包含用于有针对性地提取离子图像的工具,归一化,作为图像输出,数组,或出版物样式的图像。MSIGen提供多个接口,允许可访问性和与其他工作流轻松集成。考虑到其对各种MSI成像模式和供应商格式的支持,MSIGen是用于MSI数据的可视化和分析的有价值的工具。
    Mass spectrometry imaging (MSI) provides information about the spatial localization of molecules in complex samples with high sensitivity and molecular selectivity. Although point-wise data acquisition, in which mass spectra are acquired at predefined points in a grid pattern, is common in MSI, several MSI techniques use line-wise data acquisition. In line-wise mode, the imaged surface is continuously sampled along consecutive parallel lines and MSI data are acquired as a collection of line scans across the sample. Furthermore, aside from the standard imaging mode in which full mass spectra are acquired, other acquisition modes have been developed to enhance molecular specificity, enable separation of isobaric and isomeric species, and improve sensitivity to facilitate the imaging of low abundance species. These methods, including MS/MS-MSI in both MS2 and MS3 modes, multiple-reaction monitoring (MRM)-MSI, and ion mobility spectrometry (IMS)-MSI have all demonstrated their capabilities, but their broader implementation is limited by the existing MSI analysis software. Here, we present MSIGen, an open-source Python package for the visualization of MSI experiments performed in line-wise acquisition mode containing MS1, MS2, MRM, and IMS data, which is available at https://github.com/LabLaskin/MSIGen. The package supports multiple vendor-specific and open-source data formats and contains tools for targeted extraction of ion images, normalization, and exportation as images, arrays, or publication-style images. MSIGen offers multiple interfaces, allowing for accessibility and easy integration with other workflows. Considering its support for a wide variety of MSI imaging modes and vendor formats, MSIGen is a valuable tool for the visualization and analysis of MSI data.
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  • 文章类型: Journal Article
    作为数字表型,从智能手机等消费设备捕获主动和被动数据,变得更加普遍,正确处理数据并从中获得可复制功能的需求变得至关重要。Cortex是用于数字表型数据的开源数据处理管道,针对mindLAMP应用程序的使用进行了优化,全世界近100个研究团队都在使用它。Cortex旨在帮助团队(1)实时评估数字表型数据质量,(2)从数据中得出可复制的临床特征,和(3)实现易于共享的数据可视化。Cortex提供了许多选项来处理数字表型数据,尽管一些常见的方法可能对所有使用它的团队都有价值。本文强调了推理,代码,以及以简化方式充分处理数字表型数据所需的示例步骤。涵盖如何处理数据,评估其质量,派生特征,可视化发现,本文旨在为读者提供适用于分析任何数字表型数据集的知识和技能。更具体地说,本文将向读者传授CortexPython包的来龙去脉。这包括其与mindLAMP平台互动的背景信息,一些基本的命令来学习什么数据可以提取,和更高级的使用软件包与基本的Python混合,目标是创建一个相关矩阵。教程之后,讨论了Cortex的不同用例,连同限制。为了突出临床应用,本文还提供了3种简单的方法来实现在现实世界中使用Cortex的例子。通过了解如何使用数字表型数据并使用Cortex提供可部署的代码,这篇论文旨在展示数字表型的新领域如何既可以被所有人访问,又可以被严格的方法论。
    As digital phenotyping, the capture of active and passive data from consumer devices such as smartphones, becomes more common, the need to properly process the data and derive replicable features from it has become paramount. Cortex is an open-source data processing pipeline for digital phenotyping data, optimized for use with the mindLAMP apps, which is used by nearly 100 research teams across the world. Cortex is designed to help teams (1) assess digital phenotyping data quality in real time, (2) derive replicable clinical features from the data, and (3) enable easy-to-share data visualizations. Cortex offers many options to work with digital phenotyping data, although some common approaches are likely of value to all teams using it. This paper highlights the reasoning, code, and example steps necessary to fully work with digital phenotyping data in a streamlined manner. Covering how to work with the data, assess its quality, derive features, and visualize findings, this paper is designed to offer the reader the knowledge and skills to apply toward analyzing any digital phenotyping data set. More specifically, the paper will teach the reader the ins and outs of the Cortex Python package. This includes background information on its interaction with the mindLAMP platform, some basic commands to learn what data can be pulled and how, and more advanced use of the package mixed with basic Python with the goal of creating a correlation matrix. After the tutorial, different use cases of Cortex are discussed, along with limitations. Toward highlighting clinical applications, this paper also provides 3 easy ways to implement examples of Cortex use in real-world settings. By understanding how to work with digital phenotyping data and providing ready-to-deploy code with Cortex, the paper aims to show how the new field of digital phenotyping can be both accessible to all and rigorous in methodology.
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  • 文章类型: Journal Article
    本文介绍了使用ELKStack-Elasticsearch实现基于开源解决方案的体系结构,Logstash,和Kibana-在医疗数据集成中心进行实时数据分析和可视化,科隆大学医院,德国。该架构解决了处理不同数据源的挑战,确保标准化访问,并促进实时无缝分析,最终提高精度,速度,以及医疗信息学领域内监测过程的质量。
    This paper presents an implementation of an architecture based on open-source solutions using ELK Stack - Elasticsearch, Logstash, and Kibana - for real-time data analysis and visualizations in the Medical Data Integration Center, University Hospital Cologne, Germany. The architecture addresses challenges in handling diverse data sources, ensuring standardized access, and facilitating seamless analysis in real-time, ultimately enhancing the precision, speed, and quality of monitoring processes within the medical informatics domain.
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  • 文章类型: Journal Article
    我们提出了一个肿瘤板的数据可视化工具,将临床与分子和多组学数据合并,以完善精确的肿瘤学决策。该工具提供了全面的患者观点,促进个性化治疗策略。通过整合临床和实验室数据集,它可以通过复杂的信息进行直观的导航。通过用户友好的可视化来支持临床医生的决策。需要未来的研究来评估其在精确肿瘤学设置中的现实世界影响和可用性。
    We present a data visualization tool for tumor boards, merging clinical with molecular and multi-omics data to refine precision oncology decisions. The tool offers a holistic patient perspective, facilitating personalized treatment strategies. By integrating clinical and laboratory datasets, it enables intuitive navigation through complex information. Clinicians are supported in their decision-making by user-friendly visualizations. Future studies are needed to evaluate its real-world impact and usability in precision oncology settings.
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