DNA-methylation profiling

DNA 甲基化分析
  • 文章类型: Letter
    暂无摘要。
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Journal Article
    世界卫生组织中枢神经系统(CNS)肿瘤分类的第五版现在包括在CNS中独特或频繁发生的间充质肿瘤。此外,该版本将间充质肿瘤的术语与它们的软组织对应物对齐。增加了新的肿瘤类型,如颅内间充质肿瘤,FET-CREB融合阳性\",“CIC重排肉瘤”,原发性颅内肉瘤,DICER1-突变体\"。其他实体(例如横纹肌肉瘤)仍保留在当前的WHO分类中,因为与它们的软组织对应物相比,这些肿瘤类型可能在CNS中表现出特异性。基于广泛的文献综述,在这里,我们将在临床观察方面讨论这些新认识的实体,放射学,组织病理学,遗传学和结果,并考虑准确诊断的策略。根据这一文献分析,我们还将介绍一些潜在的新肿瘤类型。
    The fifth edition of the World Health Organization Classification of Tumors of the Central Nervous System (CNS) now includes mesenchymal tumors that occur uniquely or frequently in the CNS. Moreover, this version has aligned the terminology of mesenchymal tumors with their soft tissue counterparts. New tumor types have been added, such as the \"intracranial mesenchymal tumor, FET-CREB fusion-positive\", the \"CIC-rearranged sarcoma\", and the \"Primary intracranial sarcoma, DICER1-mutant\". Other entities (such as rhabdomyosarcoma) have remained in the current WHO classification because these tumor types may present specificities in the CNS as compared to their soft tissue counterparts. Based on an extensive literature review, herein, we will discuss these newly recognized entities in terms of clinical observation, radiology, histopathology, genetics and outcome, and consider strategies for an accurate diagnosis. In light of this literature analysis, we will also introduce some potentially novel tumor types.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    背景:伴有FGFR3的胶质瘤::TACC3融合主要发生在成人,显示胶质母细胞瘤(GB)的病理特征,通常被归类为胶质母细胞瘤,IDH-野生型。然而,显示低级别胶质瘤(LGG)病理特征的病例导致分类和临床治疗困难。我们报告了一系列8GB和14LGG与FGFR3:TACC3融合,以便更好地表征它们。
    方法:集中病理检查,在所有病例中均进行了TERT启动子突变搜索和DNA甲基化分析.通过Kaplan-Meir方法搜索预后因素。
    结果:TERT启动子突变记录在所有GB和6/14LGG中。在分类器(v12.5)中甲基化得分>0.9的7例病例中,2被归类为胶质母细胞瘤,4为神经节胶质瘤(GG),1为胚胎发育不良神经上皮肿瘤(DNET)。t-SNE分析显示22例患者分为三组:一组包括12例接近胶质母细胞瘤,IDH-野生型甲基化类别(MC),5例病例均聚集有GG或DNETMC,但无PLNTYMC。无监督聚类分析显示四组,其中两个明显不同:5例年龄相同(<40),LGG的病理特征,缺乏TERT启动子突变,FGFR3(外显子17)::TACC3(外显子10)融合型与LGGMC。相比之下,4例共有年龄(>40岁),胶质母细胞瘤的病理特征,TERT突变了。与较好预后相关的因素是年龄<40岁和缺乏TERT启动子突变。
    结论:在FGFR3::TACC3融合的胶质瘤中,年龄,TERT启动子突变,病理特征,DNA甲基化分析和融合亚型是确定患者风险的重要因素。
    Gliomas with FGFR3::TACC3 fusion mainly occur in adults, display pathological features of glioblastomas (GB) and are usually classified as glioblastoma, IDH-wildtype. However, cases demonstrating pathological features of low-grade glioma (LGG) lead to difficulties in classification and clinical management. We report a series of 8 GB and 14 LGG with FGFR3:TACC3 fusion in order to better characterize them.
    Centralized pathological examination, search for TERT promoter mutation and DNA-methylation profiling were performed in all cases. Search for prognostic factors was done by the Kaplan-Meir method.
    TERT promoter mutation was recorded in all GB and 6/14 LGG. Among the 7 cases with a methylation score > 0.9 in the classifier (v12.5), 2 were classified as glioblastoma, 4 as ganglioglioma (GG) and 1 as dysembryoplastic neuroepithelial tumor (DNET). t-SNE analysis showed that the 22 cases clustered into three groups: one included 12 cases close to glioblastoma, IDH-wildtype methylation class (MC), 5 cases each clustered with GG or DNET MC but none with PLNTY MC. Unsupervised clustering analysis revealed four groups, two of them being clearly distinct: 5 cases shared age (< 40), pathological features of LGG, lack of TERT promoter mutation, FGFR3(Exon 17)::TACC3(Exon 10) fusion type and LGG MC. In contrast, 4 cases shared age (> 40), pathological features of glioblastoma, and were TERT-mutated. Relevant factors associated with a better prognosis were age < 40 and lack of TERT promoter mutation.
    Among gliomas with FGFR3::TACC3 fusion, age, TERT promoter mutation, pathological features, DNA-methylation profiling and fusion subtype are of interest to determine patients\' risk.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Journal Article
    未经批准:2016年世界卫生组织中枢神经系统(CNS)肿瘤分类(WHO)代表了重大变化。它建议使用包含组织学和分子信息的“综合诊断”,以促进对特定中枢神经系统肿瘤的更精确诊断。其目标是提供更高的诊断精度和可重复性,从而提高临床相关性和预测价值。最终导致更好的病人护理。分子分类的进展,主要来自中枢神经系统肿瘤的DNA甲基化阵列分析,以非常快的速度发生,需要更快地融入临床实践。
    UNASSIGNED:cIMPACT-NOW更新和其他最近的论文以及WHO2021CNS5在这份全面的文章中的显着特征进行了审查。
    UNASSIGNED:如果发现肿瘤类型分类的重大变化,中枢神经系统肿瘤分类需要快速更新,并建立机制来指导诊断医生和临床医生在过渡时期。认识到需要更快地将这些纳入临床实践,没有过度拖延,2016年国际神经病理学会(ISN)发起了一项名为cIMPACT-NOW的倡议.
    UNASSIGNED:cIMPACT-NOW的目标是澄清2016年世卫组织中枢神经系统更新后出现的有争议的问题,并报告中枢神经系统肿瘤分子分类的新进展和这些进展导致的新肿瘤实体。cIMPACT-NOW更新:因此,它为第5版WHO中枢神经系统肿瘤分类(2021WHOCNS5)奠定了基础。我们在这篇评论中详细讨论了cIMPACT更新。此外,讨论了分子诊断,包括基于DNA甲基化的CNS肿瘤分类以及分子分类在CNS肿瘤的预后和治疗中的实际应用。最后,总结了新的CNS肿瘤分类的显着特征。
    UNASSIGNED: The 2016 World Health Organization Classification (WHO) of Tumors of the Central Nervous System (CNS) represented a major change. It recommended an \"integrated diagnosis\" comprising histologic and molecular information facilitating a more precise diagnosis of specific CNS tumors. Its goal was to provide greater diagnostic precision and reproducibility resulting in more clinical relevance and predictive value, ultimately leading to better patient care. Advances in molecular classification, mostly resulting from DNA methylation array profiling of CNS tumors, were occurring at a very rapid pace and required more rapid integration into clinical practice.
    UNASSIGNED: cIMPACT-NOW updates and other recent papers plus salient features of 2021 WHO CNS5 in this comprehensive write-up were reviewed.
    UNASSIGNED: CNS tumor classification needs to be updated at a rapid pace and mechanisms put into place to guide diagnosticians and clinicians in the interim period if major changes in the classification of tumor types came to light. Recognizing the need to integrate these into clinical practice more rapidly and without inordinate delay, the International Society of Neuropathology (ISN) 2016 sponsored an initiative called cIMPACT-NOW.
    UNASSIGNED: Goal of cIMPACT-NOW was to provide clarification regarding contentious issues arising in the wake of the 2016 WHO CNS update as well as report new advancements in molecular classification of CNS tumors and new tumor entities emerging as a result of these advancements. cIMPACT-NOW updates: It thus laid the foundation for the 5th edition of the WHO Classification of CNS tumors (2021 WHO CNS 5). We have discussed cIMPACT updates in detail in this review. In addition, molecular diagnostics including DNA methylation-based classification of CNS tumors and the practical use of molecular classification in the prognostication and treatment of CNS tumors is discussed. Finally, the salient features of the new CNS tumor classification are summarized.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Pubmed)

  • 文章类型: Case Reports
    这里,我们报道了一名患者出现两个组织病理学上不同的神经胶质瘤。在42岁时,该患者接受了右颞叶少突胶质细胞瘤IDH突变的1p/19q共同删除的WHOII级切除,然后接受替莫唑胺辅助放化疗。初次诊断后15个月,患者在随后的成像中显示出右半球肿瘤进展和新的左额叶对比增强.进行右侧肿瘤的再切除和左额叶肿瘤的切除。神经病理学检查显示右侧少突胶质细胞瘤复发,具有WHOIII级间变性少突胶质细胞瘤的特征,但是左额病变的胶质母细胞瘤WHOIV级。深入的分子谱分析显示了两个独立的脑肿瘤,具有不同的间变性少突胶质细胞瘤IDH突变的1p/19q共同删除的WHOIII级和胶质母细胞瘤IDH野生型WHOIV级的分子谱。通过深入的分子检查和表观基因组分析揭示了具有两个独立脑肿瘤的患者的这种独特且罕见的病例,强调了脑肿瘤综合检查的重要性,包括高级患者护理的甲基化组分析。
    Here, we report on a patient presenting with two histopathologically distinct gliomas. At the age of 42, the patient underwent initial resection of a right temporal oligodendroglioma IDH mutated 1p/19q co-deleted WHO Grade II followed by adjuvant radiochemotherapy with temozolomide. 15 months after initial diagnosis, the patient showed right hemispheric tumor progression and an additional new left frontal contrast enhancement in the subsequent imaging. A re-resection of the right-sided tumor and resection of the left frontal tumor were conducted. Neuropathological work-up showed recurrence of the right-sided oligodendroglioma with features of an anaplastic oligodendroglioma WHO Grade III, but a glioblastoma WHO grade IV for the left frontal lesion. In depth molecular profiling revealed two independent brain tumors with distinct molecular profiles of anaplastic oligodendroglioma IDH mutated 1p/19q co-deleted WHO Grade III and glioblastoma IDH wildtype WHO grade IV. This unique and rare case of a patient with two independent brain tumors revealed by in-depth molecular work-up and epigenomic profiling emphasizes the importance of integrated work-up of brain tumors including methylome profiling for advanced patient care.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

  • 文章类型: Case Reports
    介绍了弥漫性软脑膜神经胶质瘤(DLGNT),第一次,作为2016年WHO中枢神经系统肿瘤分类的临时实体。DLGNT主要发生在儿童中,其特征是广泛的软脑膜生长,偶尔与椎管内肿瘤结节有关。少突胶质细胞样细胞学检查,在没有IDH突变的情况下,胶质神经分化和MAP激酶激活与1p缺失或1p/19q共缺失相关。我们在这里报告了两个意外的DLGNT成人病例,尽管长期随访,但其特征是独特的幕上局限性实质内肿瘤,没有软脑膜受累。在这两种情况下,DLGNT的诊断是在DNA甲基化分析后做出的,该分析显示一个病例属于DLGNT类别,而另一个病例仍然不可分类,但在CNV上显示了DLGNT中记录的特征性遗传发现.这两个病例都有与KIAA1549相关的1p/19q共缺失:一个病例中的BRAF融合以及BRAFV600E和PIK3CAE545A突变,在另一个。我们的研究扩大了DLGNTs的临床和分子谱,并指出,DLGNT的术语并不完全合适,因为某些病例既没有扩散生长也没有软脑膜传播。这表明DLGNT涵盖了尚未完全阐明的广谱肿瘤。
    Diffuse leptomeningeal glioneuronal tumor (DLGNT) was introduced, for the first time, as a provisional entity in the 2016 WHO classification of central nervous system tumors. DLGNT mainly occur in children and characterized by a widespread leptomeningeal growth occasionally associated with intraspinal tumor nodules, an oligodendroglial-like cytology, glioneuronal differentiation and MAP-Kinase activation associated with either solitary 1p deletion or 1p/19q codeletion in the absence of IDH mutation.We report here two unexpected DLGNTs adult cases, characterized by a unique supratentorial circumscribed intraparenchymal tumor without leptomeningeal involvement in spite of long follow-up. In both cases, the diagnosis of DLGNT was made after DNA-methylation profiling which demonstrated that one case belonged to the DLGNT class whereas the other remained not classifiable but showed on CNV the characteristic genetic findings recorded in DLGNT. Both cases harbored 1p/19q codeletion associated with KIAA1549:BRAF fusion in one case and with BRAF V600E and PIK3CA E545A mutations, in the other.Our study enlarges the clinical and molecular spectrum of DLGNTs, and points out that the terminology of DLGNTs is not fully appropriate since some cases could have neither diffuse growth nor leptomeningeal dissemination. This suggests that DLGNTs encompass a wide spectrum of tumors that has yet to be fully clarified.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

       PDF(Sci-hub)

       PDF(Pubmed)

  • 文章类型: Journal Article
    DICER1易感性综合征患者发生胸膜肺母细胞瘤的风险增加,囊性肾瘤,胚胎性横纹肌肉瘤,和其他几个罕见的肿瘤实体。在这项研究中,我们确定了22个原发性颅内肉瘤,包括18名儿科患者,通过基于阵列的DNA甲基化谱分析检测到不同的甲基化特征。此外,确定了两个具有相同特征的子宫横纹肌肉瘤。22例颅内肉瘤的基因组测序显示,DICER1热点突变(21/22;95%)几乎是统一的特征,同时发生TP53突变(12/22;55%)。此外,17/22(77%)肉瘤表现出丝裂原活化蛋白激酶途径的改变,最常影响KRAS的突变热点(8/22;36%)和NF1的突变或缺失(7/22;32%),其次是FGFR4突变(2/22;9%),NRAS(2/22;9%),EGFR扩增(1/22;5%)。在5例具有可获得的构成性DNA的病例中,有2例检测到种系DICER1突变。值得注意的是,没有患者在诊断时显示癌症相关综合征的证据.与遗传发现相反,这些肿瘤的形态学特征不那么独特,尽管横纹肌母细胞或横纹肌母细胞样细胞可以在所有病例中进行回顾性检测。确定的遗传事件组合表明分析的颅内肿瘤与DICER1易感性综合征相关肉瘤之间的关系,例如胚胎性横纹肌肉瘤或最近描述的肾脏间变性肉瘤组。然而,我们系列中的颅内肿瘤最初被解释为代表各种肿瘤类型,但横纹肌肉瘤不在考虑的典型鉴别诊断之列.鉴于颅内肉瘤的罕见性,这种分子上明确定义的基团包括其相当大的部分。因此,我们建议命名为“具有横纹肌肉瘤样特征的梭形细胞肉瘤,这个有趣的群体的DICER1突变体。
    Patients with DICER1 predisposition syndrome have an increased risk to develop pleuropulmonary blastoma, cystic nephroma, embryonal rhabdomyosarcoma, and several other rare tumor entities. In this study, we identified 22 primary intracranial sarcomas, including 18 in pediatric patients, with a distinct methylation signature detected by array-based DNA-methylation profiling. In addition, two uterine rhabdomyosarcomas sharing identical features were identified. Gene panel sequencing of the 22 intracranial sarcomas revealed the almost unifying feature of DICER1 hotspot mutations (21/22; 95%) and a high frequency of co-occurring TP53 mutations (12/22; 55%). In addition, 17/22 (77%) sarcomas exhibited alterations in the mitogen-activated protein kinase pathway, most frequently affecting the mutational hotspots of KRAS (8/22; 36%) and mutations or deletions of NF1 (7/22; 32%), followed by mutations of FGFR4 (2/22; 9%), NRAS (2/22; 9%), and amplification of EGFR (1/22; 5%). A germline DICER1 mutation was detected in two of five cases with constitutional DNA available. Notably, none of the patients showed evidence of a cancer-related syndrome at the time of diagnosis. In contrast to the genetic findings, the morphological features of these tumors were less distinctive, although rhabdomyoblasts or rhabdomyoblast-like cells could retrospectively be detected in all cases. The identified combination of genetic events indicates a relationship between the intracranial tumors analyzed and DICER1 predisposition syndrome-associated sarcomas such as embryonal rhabdomyosarcoma or the recently described group of anaplastic sarcomas of the kidney. However, the intracranial tumors in our series were initially interpreted to represent various tumor types, but rhabdomyosarcoma was not among the typical differential diagnoses considered. Given the rarity of intracranial sarcomas, this molecularly clearly defined group comprises a considerable fraction thereof. We therefore propose the designation \"spindle cell sarcoma with rhabdomyosarcoma-like features, DICER1 mutant\" for this intriguing group.
    导出

    更多引用

    收藏

    翻译标题摘要

    我要上传

    求助全文

公众号