Polymerase Chain Reaction (PCR) amplification is widely used for retrieving information from DNA storage. During the PCR amplification process, nonspecific pairing between the 3\' end of the primer and the DNA sequence can cause cross-talk in the amplification reaction, leading to the generation of interfering sequences and reduced amplification accuracy. To address this issue, we propose an efficient coding algorithm for PCR amplification information retrieval (ECA-PCRAIR). This algorithm employs variable-length scanning and pruning optimization to construct a codebook that maximizes storage density while satisfying traditional biological constraints. Subsequently, a codeword search tree is constructed based on the primer library to optimize the codebook, and a variable-length interleaver is used for constraint detection and correction, thereby minimizing the likelihood of nonspecific pairing. Experimental results demonstrate that ECA-PCRAIR can reduce the probability of nonspecific pairing between the 3\' end of the primer and the DNA sequence to 2-25%, enhancing the robustness of the DNA sequences. Additionally, ECA-PCRAIR achieves a storage density of 2.14-3.67 bits per nucleotide (bits/nt), significantly improving storage capacity.

As an effective method for image security protection, image encryption is widely used in data hiding and content protection. This paper proposes an image encryption algorithm based on an improved Hilbert curve with DNA coding. Firstly, the discrete wavelet transform (DWT) decomposes the plaintext image by three-level DWT to obtain the high-frequency and low-frequency components. Secondly, different modes of the Hilbert curve are selected to scramble the high-frequency and low-frequency components. Then, the high-frequency and low-frequency components are reconstructed separately using the inverse discrete wavelet transform (IDWT). Then, the bit matrix of the image pixels is scrambled, changing the pixel value while changing the pixel position and weakening the strong correlation between adjacent pixels to a more significant correlation. Finally, combining dynamic DNA coding and ciphertext feedback to diffuse the pixel values improves the encryption effect. The encryption algorithm performs the scrambling and diffusion in alternating transformations of space, frequency, and spatial domains, breaking the limitations of conventional scrambling. The experimental simulation results and security analysis show that the encryption algorithm can effectively resist statistical attacks and differential attacks with good security and robustness.

Problems such as insufficient key space, lack of a one-time pad, and a simple encryption structure may emerge in existing encryption schemes. To solve these problems, and keep sensitive information safe, this paper proposes a plaintext-related color image encryption scheme. Firstly, a new five-dimensional hyperchaotic system is constructed in this paper, and its performance is analyzed. Secondly, this paper applies the Hopfield chaotic neural network together with the novel hyperchaotic system to propose a new encryption algorithm. The plaintext-related keys are generated by image chunking. The pseudo-random sequences iterated by the aforementioned systems are used as key streams. Therefore, the proposed pixel-level scrambling can be completed. Then the chaotic sequences are utilized to dynamically select the rules of DNA operations to complete the diffusion encryption. This paper also presents a series of security analyses of the proposed encryption scheme and compares it with other schemes to evaluate its performance. The results show that the key streams generated by the constructed hyperchaotic system and the Hopfield chaotic neural network improve the key space. The proposed encryption scheme provides a satisfying visual hiding result. Furthermore, it is resistant to a series of attacks and the problem of structural degradation caused by the simplicity of the encryption system\'s structure.

In order to increase the security and robustness of quantum images, this study combined the quantum DNA codec with quantum Hilbert scrambling to offer an enhanced quantum image encryption technique. Initially, to accomplish pixel-level diffusion and create enough key space for the picture, a quantum DNA codec was created to encode and decode the pixel color information of the quantum image using its special biological properties. Second, we used quantum Hilbert scrambling to muddle the image position data in order to double the encryption effect. In order to enhance the encryption effect, the altered picture was then employed as a key matrix in a quantum XOR operation with the original image. The inverse transformation of the encryption procedure may be used to decrypt the picture since all the quantum operations employed in this research are reversible. The two-dimensional optical image encryption technique presented in this study may significantly strengthen the anti-attack of quantum picture, according to experimental simulation and result analysis. The correlation chart demonstrates that the average information entropy of the RGB three channels is more than 7.999, the average NPCR and UACI are respectively 99.61% and 33.42%, and the peak value of the ciphertext picture histogram is uniform. It offers more security and robustness than earlier algorithms and can withstand statistical analysis and differential assaults.

In order to make the security and operating efficiency of an image encryption algorithm coexist, this study proposed a color image encryption algorithm with improved DNA coding and rapid diffusion. During the stage of improving DNA coding, the chaotic sequence was used to form a look-up table to complete the base substitutions. In the replacement process, several encoding methods were combined and interspersed to make the randomness higher, thereby improving the security performance of the algorithm. In the diffusion stage, three-dimensional and six-directional diffusion was performed on the three channels of the color image by taking the matrix and the vector as the diffusion unit successively. This method not only ensures the security performance of the algorithm, but also improves the operating efficiency in the diffusion stage. From the simulation experiments and performance analysis, it was shown that the algorithm has good encryption and decryption effects, large key space, high key sensitivity, and strong security. The algorithm can effectively resist differential attacks and statistical attacks, and has good robustness.

Using complex biomolecules for storage is a new carbon-based storage method. For example, DNA has the potential to be a good method for archival long-term data storage. Reasonable and efficient coding is the first and most important step in DNA storage. However, current coding methods, such as altruism algorithm, have the problem of low coding efficiency and high complexity, and coding constraints and sets make it difficult to see the coding results visually. In this study, a new DNA storage coding method based on frequency matrix game graph (FMG) is proposed to generate DNA storage coding satisfying combinatorial constraints. Compared with the randomness of the heuristic algorithm that satisfies the constraints, the coding method based on the FMG is deterministic and can clearly explain the coding process. In addition, the constraints and coding results have observable characteristics and are better than the previously published results for the size of the coding set. For example, when length of the code n = 10, hamming distance d = 4, the results obtained by proposed approach combining chaos game and graph are 24% better than the previous results. The proposed coding scheme successfully constructs high-quality coding sets with less complexity, which effectively promotes the development of carbon-based storage coding.

Classical one-dimensional chaotic map has many ideal characteristics which is quite suitable for many different kinds of scientific fields, especially cryptography. In this paper, we propose an idea of constructing high-dimensional (HD) cyclic symmetric chaotic maps by using one-dimensional (1D) chaotic map. Two constructed 3D cyclic symmetric chaotic maps are taken as the examples, named three-dimensional cyclic symmetric logistic map (3D-CSLM) and three-dimensional cyclic symmetric Chebyshev map (3D-CSCM), respectively. Numerical experiments show that the new maps possesses better dynamical performances, and their parameters have a wider range, compared with the original map. Furthermore, to verify its effect in image encryption, a novel image encryption algorithm based on 3D-CSLM and DNA coding is proposed. DNA method for image encryption can improve the efficiency of permutation and diffusion. Firstly, the algorithm uses 3D-CSLM to generate chaotic sequences for DNA operation rule selection and pixel permutation. Then through the DNA XOR operation to achieve diffusion, and finally form an encrypted image. Several simulation tests results indicate that the proposal has a promising security performance and strong anti-attack ability.

This paper proposes a more efficient attack method on an image fusion encryption algorithm based on DNA operation and hyperchaos. Although several references have reported some methods to crack the image encryption algorithm, they are not the most efficient. The proposed chosen-plaintext attack method can break the encryption scheme with (4×N/M+1) or (M/(4×N)+1) chosen-plaintext images, which is much less than the number of chosen-plaintext images used in the previous cracking algorithms, where M and N represent the height and width of the target ciphertext image, respectively. The effectiveness of the proposed chosen-plaintext attack is supported by theoretical analysis, and verified by experimental results.

This paper presents a dynamic deoxyribonucleic acid (DNA) image encryption based on Secure Hash Algorithm-512 (SHA-512), having the structure of two rounds of permutation-diffusion, by employing two chaotic systems, dynamic DNA coding, DNA sequencing operations, and conditional shifting. We employed the SHA-512 algorithm to generate a 512-bit hash value and later utilized this value with the natural DNA sequence to calculate the initial values for the chaotic systems and the eight intermittent parameters. We implemented a two-dimensional rectangular transform (2D-RT) on the permutation. We used four-wing chaotic systems and Lorentz systems to generate chaotic sequences and recombined three channel matrices and chaotic matrices with intermittent parameters. We calculated hamming distances of DNA matrices, updated the initial values of two chaotic systems, and generated the corresponding chaotic matrices to complete the diffusion operation. After diffusion, we decoded and decomposed the DNA matrices, and then scrambled and merged these matrices into an encrypted image. According to experiments, the encryption method in this paper not only was able to withstand statistical attacks, plaintext attacks, brute-force attacks, and a host of other attacks, but also could reduce the complexity of the algorithm because it adopted DNA sequencing operations that were different from traditional DNA sequencing operations.

In order to obtain chaos with a wider chaotic scope and better chaotic behavior, this paper combines the several existing one-dimensional chaos and forms a new one-dimensional chaotic map by using a modular operation which is named by LLS system and abbreviated as LLSS. To get a better encryption effect, a new image encryption method based on double chaos and DNA coding technology is proposed in this paper. A new one-dimensional chaotic map is combined with a hyperchaotic Qi system to encrypt by using DNA coding. The first stage involves three rounds of scrambling; a diffusion algorithm is applied to the plaintext image, and then the intermediate ciphertext image is partitioned. The final encrypted image is formed by using DNA operation. Experimental simulation and security analysis show that this algorithm increases the key space, has high sensitivity, and can resist several common attacks. At the same time, the algorithm in this paper can reduce the correlation between adjacent pixels, making it close to 0, and increase the information entropy, making it close to the ideal value and achieving a good encryption effect.