DNA Polymerase gamma

  • 文章类型: Journal Article
    子宫内膜癌是一种影响妇女健康的严重的常见疾病。NCI监控,流行病学,和最终结果计划预测,到2023年,美国将有>66,000例新病例和>13,000例EC死亡,而EC是全球女性中第六大最常见的癌症。线粒体代谢的调节在肿瘤发生中起作用。在增殖的癌细胞中,线粒体为氨基酸的生物合成提供了必要的构建块,脂质,核苷酸,和葡萄糖。导致线粒体活性改变的一种机制是线粒体DNA(mtDNA)突变。多倍体人类mtDNA基因组是脊椎动物生命必需的环状双链分子,具有对氧化磷酸化至关重要的基因加上线粒体衍生的肽基因。癌细胞显示有氧糖酵解,被称为Warburg效应,这是由于快速分裂的细胞的需要,其特征是葡萄糖摄取增加和葡萄糖转化为乳酸。实体肿瘤通常含有至少一个mtDNA取代。此外,癌细胞通常含有野生型和突变型mtDNA基因型的混合物,被称为异质体。考虑到癌细胞能源需求的增加,在癌症中存在功能相关的致癌作用诱导或环境适应性mtDNA突变似乎是合理的.我们回顾了来自不同研究的111名个体的279种EC肿瘤特异性mtDNA单核苷酸变体。存在许多过渡突变,表明易错的DNA聚合酶γ复制和C到U脱氨基事件。我们检查了突变谱及其异质性,并讨论了复发的潜在生物学影响,非同义词,插入,和缺失突变。最后,我们探索目前的EC治疗方法,利用癌细胞线粒体进行治疗以及使用mtDNA变体作为EC生物标志物的前景。
    Endometrial cancer (EC) is a devastating and common disease affecting women\'s health. The NCI Surveillance, Epidemiology, and End Results Program predicted that there would be >66,000 new cases in the United States and >13,000 deaths from EC in 2023, and EC is the sixth most common cancer among women worldwide. Regulation of mitochondrial metabolism plays a role in tumorigenesis. In proliferating cancer cells, mitochondria provide the necessary building blocks for biosynthesis of amino acids, lipids, nucleotides, and glucose. One mechanism causing altered mitochondrial activity is mitochondrial DNA (mtDNA) mutation. The polyploid human mtDNA genome is a circular double-stranded molecule essential to vertebrate life that harbors genes critical for oxidative phosphorylation plus mitochondrial-derived peptide genes. Cancer cells display aerobic glycolysis, known as the Warburg effect, which arises from the needs of fast-dividing cells and is characterized by increased glucose uptake and conversion of glucose to lactate. Solid tumors often contain at least one mtDNA substitution. Furthermore, it is common for cancer cells to harbor mixtures of wild-type and mutant mtDNA genotypes, known as heteroplasmy. Considering the increase in cancer cell energy demand, the presence of functionally relevant carcinogenesis-inducing or environment-adapting mtDNA mutations in cancer seems plausible. We review 279 EC tumor-specific mtDNA single nucleotide variants from 111 individuals from different studies. Many transition mutations indicative of error-prone DNA polymerase γ replication and C to U deamination events were present. We examine the spectrum of mutations and their heteroplasmy and discuss the potential biological impact of recurrent, non-synonymous, insertion, and deletion mutations. Lastly, we explore current EC treatments, exploiting cancer cell mitochondria for therapy and the prospect of using mtDNA variants as an EC biomarker.
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  • 文章类型: Journal Article
    复制的线粒体DNA聚合酶,Polγ,它的蛋白质调节对线粒体基因组的完整性至关重要。Polγ调节的复杂性及其与调节蛋白的相互作用,这对于微调聚合酶功能至关重要,仍然知之甚少。Polyγ异源三聚体的失调,由(i)PolG组成,聚合酶催化亚基和(ii)PolG2,辅助亚基,最终导致线粒体疾病。这里,我们使用单粒子低温电子显微镜来解析PolG在载脂蛋白状态下的结构,我们在催化循环中的三个中间体捕获了Polγ:DNA结合,已介入,和活性聚合状态。化学交联质谱,定点诱变揭示了PolG的LonP1接合区域,促进蛋白水解和PolG蛋白水平的调节。PolG2临床变异,破坏了稳定的Polγ复合物,导致LonP1介导的PolG降解增强。总的来说,这种对Polyγ的了解有助于理解线粒体DNA的复制,并描述了当功能不正常时,复制叉的机制如何被靶向用于蛋白水解降解。
    The replicative mitochondrial DNA polymerase, Polγ, and its protein regulation are essential for the integrity of the mitochondrial genome. The intricacies of Polγ regulation and its interactions with regulatory proteins, which are essential for fine-tuning polymerase function, remain poorly understood. Misregulation of the Polγ heterotrimer, consisting of (i) PolG, the polymerase catalytic subunit and (ii) PolG2, the accessory subunit, ultimately results in mitochondrial diseases. Here, we used single particle cryo-electron microscopy to resolve the structure of PolG in its apoprotein state and we captured Polγ at three intermediates within the catalytic cycle: DNA bound, engaged, and an active polymerization state. Chemical crosslinking mass spectrometry, and site-directed mutagenesis uncovered the region of LonP1 engagement of PolG, which promoted proteolysis and regulation of PolG protein levels. PolG2 clinical variants, which disrupted a stable Polγ complex, led to enhanced LonP1-mediated PolG degradation. Overall, this insight into Polγ aids in an understanding of mitochondrial DNA replication and characterizes how machinery of the replication fork may be targeted for proteolytic degradation when improperly functioning.
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  • 文章类型: Journal Article
    线粒体质量控制对线粒体功能至关重要。为了检查Parkin依赖机制在线粒体质量控制中的重要性,在mtDNA保真度降低的情况下,我们评估了调节Parkin对蛋白质组通量和线粒体功能的影响.要做到这一点,我们将Parkin敲除小鼠或ParkinW402A敲入小鼠品系与Polg线粒体突变品系杂交以产生纯合双突变体。在体内纵向同位素代谢标记之后,从大脑中分离肝线粒体和突触末端,富含线粒体。评估了质谱和生物能学分析。我们证明,较慢的线粒体蛋白质更新与肝线粒体中mtDNA保真度的丧失有关,但与突触末端无关。两个组织的生物能量功能都受损。路径分析显示mtDNA保真度的丧失与关键代谢途径的紊乱有关,与代谢紊乱和神经变性有关。此外,我们发现失去Parkin会导致Polg驱动的蛋白质组后果恶化,尽管它在表现出快速线粒体更新的组织中可能具有生物能量保护作用。最后,我们提供的证据表明,令人惊讶的是,Parkin的非自动抑制(ParkinW402A)在功能上类似于Parkin基因敲除,并且无法挽救有害的Polg驱动效应。我们的研究实现了三个主要结果:(1)它支持最近的研究表明,帕金依赖是响应增加mtDNA突变负荷低,(2)它提供了帕金功能不全的潜在保护作用的证据,(3)它质疑增强Parkin功能的治疗吸引力。
    Mitochondrial quality control is essential in mitochondrial function. To examine the importance of Parkin-dependent mechanisms in mitochondrial quality control, we assessed the impact of modulating Parkin on proteome flux and mitochondrial function in a context of reduced mtDNA fidelity. To accomplish this, we crossed either the Parkin knockout mouse or ParkinW402A knock-in mouse lines to the Polg mitochondrial mutator line to generate homozygous double mutants. In vivo longitudinal isotopic metabolic labeling was followed by isolation of liver mitochondria and synaptic terminals from the brain, which are rich in mitochondria. Mass spectrometry and bioenergetics analysis were assessed. We demonstrate that slower mitochondrial protein turnover is associated with loss of mtDNA fidelity in liver mitochondria but not synaptic terminals, and bioenergetic function in both tissues is impaired. Pathway analysis revealed loss of mtDNA fidelity is associated with disturbances of key metabolic pathways, consistent with its association with metabolic disorders and neurodegeneration. Furthermore, we find that loss of Parkin leads to exacerbation of Polg-driven proteomic consequences, though it may be bioenergetically protective in tissues exhibiting rapid mitochondrial turnover. Finally, we provide evidence that, surprisingly, dis-autoinhibition of Parkin (ParkinW402A) functionally resembles Parkin knockout and fails to rescue deleterious Polg-driven effects. Our study accomplishes three main outcomes: (1) it supports recent studies suggesting that Parkin dependence is low in response to an increased mtDNA mutational load, (2) it provides evidence of a potential protective role of Parkin insufficiency, and (3) it draws into question the therapeutic attractiveness of enhancing Parkin function.
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  • 文章类型: Journal Article
    线粒体疾病与神经元死亡和mtDNA消耗有关。星形胶质细胞对损伤或刺激以及对中枢神经系统的损害作出反应。神经变性可导致星形胶质细胞激活并获得诱导神经元死亡的毒性功能。然而,星形胶质细胞激活及其对线粒体疾病中神经元稳态的影响仍有待探索。使用携带POLG突变的患者细胞,我们产生了iPSCs,然后将其分化为星形胶质细胞.POLG星形胶质细胞表现出线粒体功能障碍,包括线粒体膜电位丧失,能量故障,失去复合物I和IV,NAD+/NADH代谢紊乱,和mtDNA消耗。Further,POLG来源的星形胶质细胞呈现A1样反应表型,增殖增加,入侵,参与刺激反应的通路上调,免疫系统过程,细胞增殖和细胞杀伤。在与神经元的直接和间接共培养下,POLG星形胶质细胞表现出导致神经元死亡的毒性作用。我们证明由POLG突变引起的线粒体功能障碍不仅导致影响神经元和星形胶质细胞的能量代谢的内在缺陷。还有星形胶质细胞驱动的神经毒性损伤。这些发现揭示了功能失调的星形胶质细胞的新作用,这有助于POLG疾病的发病机理。
    Mitochondrial diseases are associated with neuronal death and mtDNA depletion. Astrocytes respond to injury or stimuli and damage to the central nervous system. Neurodegeneration can cause astrocytes to activate and acquire toxic functions that induce neuronal death. However, astrocyte activation and its impact on neuronal homeostasis in mitochondrial disease remain to be explored. Using patient cells carrying POLG mutations, we generated iPSCs and then differentiated these into astrocytes. POLG astrocytes exhibited mitochondrial dysfunction including loss of mitochondrial membrane potential, energy failure, loss of complex I and IV, disturbed NAD+/NADH metabolism, and mtDNA depletion. Further, POLG derived astrocytes presented an A1-like reactive phenotype with increased proliferation, invasion, upregulation of pathways involved in response to stimulus, immune system process, cell proliferation and cell killing. Under direct and indirect co-culture with neurons, POLG astrocytes manifested a toxic effect leading to the death of neurons. We demonstrate that mitochondrial dysfunction caused by POLG mutations leads not only to intrinsic defects in energy metabolism affecting both neurons and astrocytes, but also to neurotoxic damage driven by astrocytes. These findings reveal a novel role for dysfunctional astrocytes that contribute to the pathogenesis of POLG diseases.
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  • 文章类型: Journal Article
    目的:调查挪威人群POLG病的患病率和自然史。
    方法:国家,以人口为基础,使用人口学的回顾性研究,临床,和基因证实的POLG病患者的遗传数据。这些患者在2002年至2022年之间被诊断,并被纳入挪威POLG患者登记处。根据发病年龄对患者进行分层(早期<12岁,青少年到成人12-40岁,晚期≥40年)和常住地区。
    结果:纳入91例患者。POLG病的点患病率为1:149,253。出生患病率为1:48,780。临床发病的中位年龄为16岁(范围:2个月至70岁)。35%的人(91人中有32人)发病较早,青少年成年人占55%(91人中有50人),晚期占10%(91人中有9人)。观察到疾病发作的明显季节性模式,57%(91人中有52人)在5月至8月期间出席。45例(49%)急性加重需要重症监护,这影响了早期发病组的72%。死亡率为54%(91人中有49人),从发病到死亡的中位时间为3年(范围:1个月至36年)。
    结论:我们在第一个全国范围内研究中提供了POLG疾病的点患病率和出生患病率,其中流行病学和临床数据被整合。临床发作的季节性变化可能为疾病机制和修饰因素提供有价值的见解。这项研究的结果对于量化疾病负担至关重要,并有助于循证医疗规划。
    OBJECTIVE: To investigate the prevalence and natural history of POLG disease in the Norwegian population.
    METHODS: A national, population-based, retrospective study using demographic, clinical, and genetic data of patients with genetically confirmed POLG disease. The patients were diagnosed between 2002 and 2022, and were included into the Norwegian POLG Patient Registry. Patients were stratified according to age at disease onset (early <12 years, juvenile to adult 12-40 years, late ≥40 years) and resident region.
    RESULTS: Ninety-one patients were included. The point prevalence of POLG disease was 1:149,253. Birth prevalence was 1:48,780. Median age at clinical onset was 16 years (range: 2 months to 70 years). Onset occurred early in 35% (32 out of 91), juvenile-adult in 55% (50 out of 91) and late in 10% (9 out of 91). A distinct seasonal pattern in disease onset was observed, with 57% (52 out of 91) presenting between May and August. Forty-five patients (49%) had acute exacerbations that required intensive care, and this affected 72% of those in the early-onset group. The mortality rate was 54% (49 out of 91), with a median time from disease onset to death of 3 years (range: 1 month to 36 years).
    CONCLUSIONS: We provide the point prevalence and birth prevalence of POLG disease in the first nationwide study in which epidemiological and clinical data were integrated. Seasonal variations in clinical onset may offer valuable insights into disease mechanisms and modifying factors. The findings from this study are crucial for quantifying the disease burden, and contribute to evidence-based healthcare planning.
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  • 文章类型: Journal Article
    我们的目的是在大量POLG病患者中提供癫痫持续状态(SE)的详细表型描述,并确定预后生物标志物以改善这种危及生命的疾病的管理。在跨国公司中,来自七个欧洲国家的POLG病患者的回顾性研究,我们确定了那些有SE的人。SE发病的年龄,伴随临床,实验室,对影像学和遗传学结果进行了分析.招募了一百九十五名基因证实的POLG疾病患者,其中67%(130/194)患有癫痫。在77%(97/126)中发现了SE,SE发病年龄中位数为7岁。在43%(40/93)的SE患者中,SE是该疾病的表现症状,而57%(53/93)的患者在病程中发展为SE。据报道,惊厥性SE占97%(91/94),其次是癫痫样持续发作占67%(56/84)。肝功能损害78%(74/95),共济失调69%(60/87),中风样发作57%(50/88),是主要的合并症。在大多数(66%;57/86)的SE中,这变成了耐火或超耐火。与没有癫痫发作的患者相比,癫痫发作的存在与死亡率显着升高相关(P≤0.001)。从SE首次亮相到死亡的中位时间为5个月。SE是POLG疾病早期和青少年至成人发病的主要临床特征,可以是多系统疾病的表现特征或一部分。它与高发病率和死亡率有关,大多数SE患者继续发展为难治性或超难治性SE。
    We aimed to provide a detailed phenotypic description of status epilepticus (SE) in a large cohort of patients with POLG disease and identify prognostic biomarkers to improve the management of this life-threatening condition. In a multinational, retrospective study with data on patients with POLG disease from seven European countries, we identified those who had SE. The age of SE onset, accompanying clinical, laboratory, imaging and genetic findings were analysed. One hundred and ninety-five patients with genetically confirmed POLG disease were recruited, of whom 67% (130/194) had epilepsy. SE was identified in 77% (97/126), with a median age of SE onset of 7 years. SE was the presenting symptom of the disease in 43% (40/93) of those with SE, while 57% (53/93) developed SE during the disease course. Convulsive SE was reported in 97% (91/94) followed by epilepsia partialis continua in 67% (56/84). Liver impairment 78% (74/95), ataxia 69% (60/87), stroke-like episodes 57% (50/88), were the major comorbidities. In the majority (66%; 57/86) with SE this became refractory or super-refractory. The presence of seizures was associated with significantly higher mortality compared to those without (P ≤ 0.001). The median time from SE debut to death was 5 months. SE is a major clinical feature of POLG disease in early and juvenile to adult-onset disease and can be the presenting feature or arise as part of a multisystem disease. It is associated with high morbidity and mortality, with the majority of patients with SE going on to develop refractory or super-refractory SE.
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  • 文章类型: Journal Article
    DNA聚合酶γ(Polγ)的复制准确性对于线粒体基因组完整性至关重要。人Polγ精氨酸-853的突变与神经系统疾病有关。虽然不是催化残留物,Polγ精氨酸-853突变体没有聚合酶活性。为了确定疾病的结构基础,我们确定了具有正确传入核苷酸2'-脱氧胞苷5'-三磷酸(dCTP)的Polγ突变体三元复合物的晶体结构。与野生型相反,当与形成催化活性活性位点所必需的正确核苷酸结合时,会发生开放到封闭的构象变化,突变复合物没有经历构象变化,dCTP没有与Watson-Crick互补模板残基碱基配对。我们的研究表明,精氨酸-853协调一个相互作用网络,使引物和dCTP的3'端与催化残基对齐。网络的中断排除了Watson-Crick碱基配对的形成和活性位点的关闭,导致无活性的聚合酶。
    The replication accuracy of DNA polymerase gamma (Pol γ) is essential for mitochondrial genome integrity. Mutation of human Pol γ arginine-853 has been linked to neurological diseases. Although not a catalytic residue, Pol γ arginine-853 mutants are void of polymerase activity. To identify the structural basis for the disease, we determined a crystal structure of the Pol γ mutant ternary complex with correct incoming nucleotide 2\'-deoxycytidine 5\'-triphosphate (dCTP). Opposite to the wild type that undergoes open-to-closed conformational changes when bound to a correct nucleotide that is essential for forming a catalytically competent active site, the mutant complex failed to undergo the conformational change, and the dCTP did not base pair with its Watson-Crick complementary templating residue. Our studies revealed that arginine-853 coordinates an interaction network that aligns the 3\'-end of primer and dCTP with the catalytic residues. Disruption of the network precludes the formation of Watson-Crick base pairing and closing of the active site, resulting in an inactive polymerase.
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  • 文章类型: Case Reports
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  • 文章类型: Case Reports
    POLG突变,线粒体疾病的主要原因,表现出广泛的发病年龄和复杂的临床表现。我们在一名患有POLG突变的老年人中遇到了非典型的临床特征,以类似中风的情节为特征,慢性失眠和短暂的眼球节律性运动。病史显示,自50岁以来就有慢性便秘,自60岁出头以来就有进行性双侧眼肌麻痹。随后,他经历了急性脑病,后来发展为慢性失眠。目前的神经系统检查显示双侧完全眼肌麻痹,上睑下垂,和有节奏的眼睛和下巴运动。影像学显示提示中风样发作的发现,最终的遗传分析显示POLG基因中存在纯合错义突变。该病例扩大了POLG突变在60岁以上个体中的临床范围,展示了类似中风的罕见组合,慢性失眠和眼球节律性运动。
    The POLG mutation, a leading cause of mitochondrial diseases, exhibits a wide-ranging age of onset and a complex clinical presentation. We encountered an atypical clinical profile in an elderly man with a POLG mutation, characterised by a stroke-like episode, chronic insomnia and transient oculomasticatory rhythmic movement. History revealed chronic constipation since his 50s and progressive bilateral ophthalmoplegia since his early 60s. Subsequently, he had experienced acute encephalopathy and later developed chronic insomnia. The present neurological examination showed bilateral complete ophthalmoplegia, ptosis, and rhythmic ocular and jaw movements. Imaging indicated findings suggestive of a stroke-like episode and eventual genetic analysis revealed a homozygous missense mutation in the POLG gene. This case expands the clinical spectrum of POLG mutations in individuals over 60 years, showcasing the rare combination of a stroke-like episode, chronic insomnia and oculomasticatory rhythmic movement.
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  • 文章类型: Journal Article
    人类线粒体DNA聚合酶γ是一种全酶,参与线粒体DNA(mtDNA)复制和维持,由催化亚基(POLG)和赋予持续合成能力的二聚体辅助亚基(POLG2)组成。POLG或POLG2的突变导致人类POLG相关疾病,导致以mtDNA耗竭(MDD)或多个缺失积累为特征的孟德尔遗传性线粒体疾病的子集,表现出多器官缺陷,通常在年轻时导致过早死亡。考虑到POLG2模型的匮乏,我们通过CRISPR/Cas9技术产生了稳定的斑马鱼polg2突变系(polg2ia304),带有移码突变和过早终止密码子的10个核苷酸缺失。与野生型同胞相比,斑马鱼polg2纯合突变体的发育较慢,生存能力下降,在少年阶段前死去。突变体显示出一组与POLG相关的表型,与受POLG相关疾病影响的人类患者的症状相当。包括显著的MDD,改变了线粒体网络和动力学,减少线粒体呼吸.组织学分析检测到高能量需求组织的形态学改变,伴随着骨骼肌纤维的严重紊乱。与上一个发现一致,运动分析强调了幼虫的运动性下降。值得注意的是,用甲苯磺酸盐Clofilium药物治疗,先前显示在POLG模型中有效,可以部分挽救Polg2突变动物的MDD。总之,我们的研究结果表明,斑马鱼是研究与POLG2相关的人类POLG相关疾病的病因病理学的有效模型,也是筛选POLG2相关形式的POLG药物疗效的合适平台.
    The human mitochondrial DNA polymerase gamma is a holoenzyme, involved in mitochondrial DNA (mtDNA) replication and maintenance, composed of a catalytic subunit (POLG) and a dimeric accessory subunit (POLG2) conferring processivity. Mutations in POLG or POLG2 cause POLG-related diseases in humans, leading to a subset of Mendelian-inherited mitochondrial disorders characterized by mtDNA depletion (MDD) or accumulation of multiple deletions, presenting multi-organ defects and often leading to premature death at a young age. Considering the paucity of POLG2 models, we have generated a stable zebrafish polg2 mutant line (polg2ia304) by CRISPR/Cas9 technology, carrying a 10-nucleotide deletion with frameshift mutation and premature stop codon. Zebrafish polg2 homozygous mutants present slower development and decreased viability compared to wild type siblings, dying before the juvenile stage. Mutants display a set of POLG-related phenotypes comparable to the symptoms of human patients affected by POLG-related diseases, including remarkable MDD, altered mitochondrial network and dynamics, and reduced mitochondrial respiration. Histological analyses detected morphological alterations in high-energy demanding tissues, along with a significant disorganization of skeletal muscle fibres. Consistent with the last finding, locomotor assays highlighted a decreased larval motility. Of note, treatment with the Clofilium tosylate drug, previously shown to be effective in POLG models, could partially rescue MDD in Polg2 mutant animals. Altogether, our results point at zebrafish as an effective model to study the etiopathology of human POLG-related disorders linked to POLG2, and a suitable platform to screen the efficacy of POLG-directed drugs in POLG2-associated forms.
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