Cryptobiosis

Cryptobiosis
  • 文章类型: Journal Article
    缓步以其在各种环境压力下生存的能力而闻名。特别是,缓流可以在自身上卷曲,同时失去其内部水分的很大一部分,以形成称为tun的结构。在不同的条件下生存,缓行经历不同的形态转变,这可能表明特定于应力条件的应力感应和耐受性的不同机制。有效区分形态变换的方法,包括由不同压力条件引起的金枪鱼之间,缺乏。在这里,开发了一种区分缓行形态状态的方法,并用于比较蔗糖和CaCl2诱导的tuns,使用模型物种Hypsibius示例。使用共聚焦激光扫描显微镜进行阴影成像的新颖方法使Hys的三维渲染得以产生。在各种生理状态下进行体积测量。将这些测量与使用扫描电子显微镜进行的定性形态分析相结合,表明蔗糖和CaCl2诱导的tuns具有不同的形态,包括tun形成过程中排出的水量的差异。Further,改变施加的应激源的浓度不会影响损失的水量,指向Hys的水驱逐。示例是适应特定压力源的受控过程。
    Tardigrades are renowned for their ability to survive a wide array of environmental stressors. In particular, tardigrades can curl in on themselves while losing a significant proportion of their internal water content to form a structure referred to as a tun. In surviving varying conditions, tardigrades undergo distinct morphological transformations that could indicate different mechanisms of stress sensing and tolerance specific to the stress condition. Methods to effectively distinguish between morphological transformations, including between tuns induced by different stress conditions, are lacking. Herein, an approach for discriminating between tardigrade morphological states is developed and utilized to compare sucrose- and CaCl2-induced tuns, using the model species Hypsibius exemplaris. A novel approach of shadow imaging with confocal laser scanning microscopy enabled production of three-dimensional renderings of Hys. exemplaris in various physiological states resulting in volume measurements. Combining these measurements with qualitative morphological analysis using scanning electron microscopy revealed that sucrose- and CaCl2-induced tuns have distinct morphologies, including differences in the amount of water expelled during tun formation. Further, varying the concentration of the applied stressor did not affect the amount of water lost, pointing towards water expulsion by Hys. exemplaris being a controlled process that is adapted to the specific stressors.
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  • 文章类型: Journal Article
    缓步拉马佐蒂乌斯变种对一系列环境压力具有显着的恢复力。在这项研究中,我们已经鉴定了R.varieornatus中小热休克蛋白(sHSP)家族的两个成员,HSP20-3和HSP20-6。这些是响应于成年慢行在35°C下的24小时热休克的最高度上调的sHSP,其中HSP20-3是整个转录组中最高度上调的基因之一。R.variornatussHSP和人类sHSP,CRYAB(HSPB5),是重组产生的,用于比较结构-功能研究。在热诱导的蛋白质聚集测定中,HSP20-3表现出比人CRYAB更好的伴侣活性。如通过负染色样品的尺寸排阻色谱和透射电子显微镜评估的,两种缓步sHSP也形成比CRYAB更大的寡聚体。虽然HSP20-3和HSP20-6都形成了大小可变的颗粒,并且大于由CRYAB形成的颗粒,只有HSP20-3形成丝状结构。由HSP20-3形成的颗粒和丝状结构看起来是相互关联的,因为丝状结构通常具有位于其端部的颗粒。序列分析确定了两个独特的特征;插入N末端结构域(NTD)的中间区域,并在CRYAB中确定的关键序列之前,以及位于HSP20-3C末端结构域的重复QNTN基序。NTD插入预计会影响蛋白质-蛋白质相互作用和亚基寡聚化。重复的QNTN基序的去除消除了HSP20-3伴侣的活性,也影响了丝状结构的组装。我们讨论了HSP20-3对蛋白质缩合物形成的潜在贡献。
    The tardigrade Ramazzottius varieornatus has remarkable resilience to a range of environmental stresses. In this study, we have characterised two members of the small heat shock protein (sHSP) family in R. varieornatus, HSP20-3 and HSP20-6. These are the most highly upregulated sHSPs in response to a 24 h heat shock at 35 0C of adult tardigrades with HSP20-3 being one of the most highly upregulated gene in the whole transcriptome. Both R. varieornatus sHSPs and the human sHSP, CRYAB (HSPB5), were produced recombinantly for comparative structure-function studies. HSP20-3 exhibited a superior chaperone activity than human CRYAB in a heat-induced protein aggregation assay. Both tardigrade sHSPs also formed larger oligomers than CRYAB as assessed by size exclusion chromatography and transmission electron microscopy of negatively stained samples. Whilst both HSP20-3 and HSP20-6 formed particles that were variable in size and larger than the particles formed by CRYAB, only HSP20-3 formed filament-like structures. The particles and filament-like structures formed by HSP20-3 appear inter-related as the filament-like structures often had particles located at their ends. Sequence analyses identified two unique features; an insertion in the middle region of the N-terminal domain (NTD) and preceding the critical-sequence identified in CRYAB, as well as a repeated QNTN-motif located in the C-terminal domain of HSP20-3. The NTD insertion is expected to affect protein-protein interactions and subunit oligomerisation. Removal of the repeated QNTN-motif abolished HSP20-3 chaperone activity and also affected the assembly of the filament-like structures. We discuss the potential contribution of HSP20-3 to protein condensate formation.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    Tardigrada是一种蜕皮动物谱系,以其韧性而闻名。缓行可以耐受高剂量的辐射,低氧环境,干燥以及在称为脱水生物的休眠状态下的高温和低温,这是在几乎完全干燥后代谢的可逆停止。大量的研究集中在与这些能力相关的遗传途径上,和一些基因已经被鉴定和链接到缓行的极端耐受反应。然而,这些基因的历史尚不清楚,而Tardigrada中极端耐受基因的起源和历史仍然是个谜。这里,我们在Tardigrada中产生了六个与干燥和辐射耐受性相关的独立基因家族的第一个系统发育:胞质丰富的热溶蛋白(CAHS),线粒体丰富的热溶蛋白(MAHS),分泌丰富的热溶蛋白(SAHS),减数分裂重组11同系物(MRE11)和新发现的棘皮动物研究丰富的水溶性蛋白质(EtAHSα和β)。我们对基因重复的研究表明,这些基因的进化与缓步步中水生到陆生的过渡之间存在联系。我们的结果表明,缓步只可能从海洋环境过渡到陆地环境两次,一次在茎-Eutardigrada,一次在异位症,这解释了这两类人对脱水生物的独特适应。
    Tardigrada is an ecdysozoan lineage famed for its resilience. Tardigrades can tolerate high doses of radiation, low-oxygen environments, desiccation, and both high and low temperatures under a dormant state called \"anhydrobiosis\", which is a reversible halt of metabolism upon almost complete desiccation. A large amount of research has focused on the genetic pathways related to these capabilities, and a number of genes have been identified and linked to the extremotolerant response of tardigrades. However, the history of these genes is unclear, and the origins and history of extremotolerant genes within Tardigrada remain a mystery. Here, we generate the first phylogenies of six separate protein families linked with desiccation and radiation tolerance in Tardigrada: cytosolic abundant heat-soluble protein, mitochondrial abundant heat-soluble protein, secretory abundant heat-soluble protein, meiotic recombination 11 homolog, and the newly discovered Echiniscus testudo abundant heat-soluble proteins (alpha and beta). The high number of independent gene duplications found amongst the six gene families studied suggests that tardigrades have a complex history with numerous independent adaptations to cope with aridity within the limnoterrestrial environment. Our results suggest that tardigrades likely transitioned from a marine environment to a limnoterrestrial environment only twice, once in stem Eutardigrada and once in Heterotardigrada, which explains the unique adaptations to anhydrobiosis present in both classes.
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  • 文章类型: Journal Article
    缓步以进入被称为隐生物的潜伏生命的极端耐受状态而闻名。虽然人们普遍认为,通过冷冻(冷冻)和干燥(脱水)可以诱发隐菌病,后者涉及形成所谓的隧道,这种状态的确切机制以及其他隐菌病诱导因素的意义仍然不明确。这里,我们专注于海洋潮汐缓步Echiniscoidessigismundi的渗透和化学胁迫耐受性。我们表明,西吉斯蒙迪在暴露于饱和海水后以及暴露于含有线粒体解偶联剂DNP的局部海水后进入tun状态。后面的实验提供了渗透生物和化学生物的证据,即,由高水平的渗透物和毒物诱导的隐生物,分别。同时暴露于DNP和饱和海水后,观察到存活率略有下降,这表明在渗透生物系统中,缓流可能不是完全代谢的。缓步容易处理暴露于超纯水,但是低渗休克会损害Tun的形成,当暴露于超纯水中时,缓流不会耐受DNP,表明对稀溶液的耐受性涉及耗能过程。我们讨论了与早期和更现代的隐生物研究有关的数据,我们认为渗透生物应被定义为由高外部渗透压引起的隐生物状态。我们的研究支持以下假设:渗透生物和脱水生物的潜在机制是重叠的,渗透生物可能代表了涉及体内水分剥夺的隐生形式的进化先驱。
    Tardigrades are renowned for their ability to enter the extremotolerant state of latent life known as cryptobiosis. While it is widely accepted that cryptobiosis can be induced by freezing (cryobiosis) and by desiccation (anhydrobiosis), the latter involving formation of a so-called tun, the exact mechanisms underlying the state-as well as the significance of other cryptobiosis inducing factors-remain ambiguous. Here, we focus on osmotic and chemical stress tolerance in the marine tidal tardigrade Echiniscoides sigismundi. We show that E. sigismundi enters the tun state following exposure to saturated seawater and upon exposure to locality seawater containing the mitochondrial uncoupler DNP. The latter experiments provide evidence of osmobiosis and chemobiosis, i.e., cryptobiosis induced by high levels of osmolytes and toxicants, respectively. A small decrease in survival was observed following simultaneous exposure to DNP and saturated seawater indicating that the tardigrades may not be entirely ametabolic while in the osmobiotic tun. The tardigrades easily handle exposure to ultrapure water, but hypo-osmotic shock impairs tun formation and when exposed to ultrapure water the tardigrades do not tolerate DNP, indicating that tolerance towards dilute solutions involves energy-consuming processes. We discuss our data in relation to earlier and more contemporary studies on cryptobiosis and we argue that osmobiosis should be defined as a state of cryptobiosis induced by high external osmotic pressure. Our investigation supports the hypothesis that the mechanisms underlying osmobiosis and anhydrobiosis are overlapping and that osmobiosis likely represents the evolutionary forerunner of cryptobiosis forms that involve body water deprivation.
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  • 文章类型: Journal Article
    我们通过直接接触探索宇宙的能力仅限于少量的月球和行星际任务。然而,NASA星光计划指出了一条前进的道路,相对论航天器远离我们的太阳系通过对峙定向能量推进。这些小型化的航天器能够进行机器人探索,但也可以运输种子和生物,标志着我们表征和扩展已知生命的能力的深刻变化。在这里,我们探索星际空间生物学的生物和技术挑战,专注于能够隐生的耐辐射微生物。此外,我们讨论了行星保护问题和其他向恒星发送生命的道德考虑。
    Our ability to explore the cosmos by direct contact has been limited to a small number of lunar and interplanetary missions. However, the NASA Starlight program points a path forward to send small, relativistic spacecraft far outside our solar system via standoff directed-energy propulsion. These miniaturized spacecraft are capable of robotic exploration but can also transport seeds and organisms, marking a profound change in our ability to both characterize and expand the reach of known life. Here we explore the biological and technological challenges of interstellar space biology, focusing on radiation-tolerant microorganisms capable of cryptobiosis. Additionally, we discuss planetary protection concerns and other ethical considerations of sending life to the stars.
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  • 文章类型: Journal Article
    谱系特异性基因可以促进新性状和适应的出现和进化。缓步动物是通过经历称为脱水生物的隐生形式来适应极端条件的动物,到非活动干燥状态的物理转变。虽然了解脱水生物转换中种间多样性的遗传学基础的研究已经确定了该过程中涉及的缓步特异性基因和家族扩展,物种特异性基因对缓行发育和隐生变异的贡献尚不清楚。我们在整个发育和脱水过程中使用了以前发表的转录组(5个胚胎阶段,7少年阶段,活跃的成年人,和tun成年人)以评估2种缓步物种之间不同类别基因的转录偏差,HypsibiusexamplesandRamazzottiusvarieornatus.我们还使用了另外两种缓步基因的转录组,西吉斯蒙迪和里希特修斯·考尼,和来自3种非缓步物种的数据(Adenitavaga,黑腹果蝇,和秀丽隐杆线虫)来帮助识别谱系特异性基因。我们发现谱系特异性基因通常具有低且窄的表达,但根据物种的不同,在不同发育阶段的偏向基因中富集。有偏见的基因倾向于特定于早期和晚期发育,但是物种之间偏向基因的功能富集几乎没有重叠。尽管在两个物种的脱水过程中都表达了同源基因,但2种缓流中的基因扩增也涉及具有不同功能的家族。我们的结果表明,在发育和脱水过程中,2个缓行中谱系特异性基因的转录贡献和偏倚存在种间差异。
    Lineage-specific genes can contribute to the emergence and evolution of novel traits and adaptations. Tardigrades are animals that have adapted to tolerate extreme conditions by undergoing a form of cryptobiosis called anhydrobiosis, a physical transformation to an inactive desiccated state. While studies to understand the genetics underlying the interspecies diversity in anhydrobiotic transitions have identified tardigrade-specific genes and family expansions involved in this process, the contributions of species-specific genes to the variation in tardigrade development and cryptobiosis are less clear. We used previously published transcriptomes throughout development and anhydrobiosis (5 embryonic stages, 7 juvenile stages, active adults, and tun adults) to assess the transcriptional biases of different classes of genes between 2 tardigrade species, Hypsibius exemplaris and Ramazzottius varieornatus. We also used the transcriptomes of 2 other tardigrades, Echiniscoides sigismundi and Richtersius coronifer, and data from 3 non-tardigrade species (Adenita vaga, Drosophila melanogaster, and Caenorhabditis elegans) to help identify lineage-specific genes. We found that lineage-specific genes have generally low and narrow expression but are enriched among biased genes in different stages of development depending on the species. Biased genes tend to be specific to early and late development, but there is little overlap in functional enrichment of biased genes between species. Gene expansions in the 2 tardigrades also involve families with different functions despite homologous genes being expressed during anhydrobiosis in both species. Our results demonstrate the interspecific variation in transcriptional contributions and biases of lineage-specific genes during development and anhydrobiosis in 2 tardigrades.
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  • 文章类型: Journal Article
    水的可获得性是陆地生命最重要的因素之一。陆地栖息地可能会定期变得干燥,这可以通过生物体经历脱水生物的能力来克服。在动物中,这种现象已经被报道为无脊椎动物,缓步是最著名的。然而,不同的缓步物种的脱水生物能力似乎存在显着差异。虽然一些研究已经解决了这个问题,建立的缓步脱水实验方案在物种内部和物种之间都不同,导致模棱两可的结果。因此,我们应用统一的条件来估计恢复活跃生命所反映的物种内和物种间的脱水能力差异。我们分析了代表掠食性和草食性物种的Milnesiuminceptum和Ramazzottiussubanomalus,分别,并且经常在同一栖息地中共同发生。结果表明,食肉Mil。与食草公羊相比,食肉表现出更好的脱水生物生存能力。亚异常。这种趋势在某种程度上与自米尔以来“醒来”的时间相吻合。食道显示出任何第一个个体的第一次运动和全部活动都晚于拉姆。亚异常。然而,对于Mil,观察到所有个体的运动更快。inceptum。还观察到不同脱水生物长度的实验组之间的差异:更长的tun状态持续时间,恢复活动需要更多的时间。
    Water availability is one of the most important factors for terrestrial life. Terrestrial habitats may periodically become dry, which can be overcome by an organism\'s capability to undergo anhydrobiosis. In animals, this phenomenon has been reported for invertebrates, with tardigrades being the best-known. However, different tardigrade species appear to significantly differ in their anhydrobiotic abilities. While several studies have addressed this issue, established experimental protocols for tardigrade dehydration differ both within and among species, leading to ambiguous results. Therefore, we apply unified conditions to estimate intra-and interspecies differences in anhydrobiosis ability reflected by the return to active life. We analysed Milnesium inceptum and Ramazzottius subanomalus representing predatory and herbivorous species, respectively, and often co-occur in the same habitat. The results indicated that the carnivorous Mil. inceptum displays better anhydrobiosis survivability than the herbivorous Ram. subanomalus. This tendency to some degree coincides with the time of \"waking up\" since Mil. inceptum showed first movements and full activity of any first individual later than Ram. subanomalus. The movements of all individuals were however observed to be faster for Mil. inceptum. Differences between the experimental groups varying in anhydrobiosis length were also observed: the longer tun state duration, the more time was necessary to return to activity.
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  • 文章类型: Journal Article
    由于人类活动集中在非洲大陆的无冰地区,南极洲的陆地微无脊椎动物可能暴露于污染物中。因此,了解南极微型无脊椎动物对污染物的响应对于确定人为影响的程度很重要。南极Philodinasp.是从凯西站的土壤和苔藓中提取的,东南极洲并暴露于Cu水溶液96小时。对过量的铜敏感,浓度为36μgL-1Cu(48h)和24μgL-1Cu(96h)的抑制活性为50%。这是第一项发表的研究,描述了来自陆地种群的轮虫对金属的生态毒理学敏感性,和南极轮虫污染。这也是第一项利用白斑类轮虫隐菌病(化学生物病)作为亚致死生态毒理学终点的研究。这项初步调查强调了需要进一步研究陆地南极微型无脊椎动物对污染物的反应。
    Terrestrial microinvertebrates in Antarctica are potentially exposed to contaminants due to the concentration of human activity on ice-free areas of the continent. As such, knowledge of the response of Antarctic microinvertebrates to contaminants is important to determine the extent of anthropogenic impacts. Antarctic Philodina sp. were extracted from soils and mosses at Casey station, East Antarctica and exposed to aqueous Cu for 96 h. The Philodina sp. was sensitive to excess Cu, with concentrations of 36 μg L-1 Cu (48 h) and 24 μg L-1 Cu (96 h) inhibiting activity by 50%. This is the first study to be published describing the ecotoxicologically derived sensitivity of a rotifer from a terrestrial population to metals, and an Antarctic rotifer to contaminants. It is also the first study to utilise bdelloid rotifer cryptobiosis (chemobiosis) as a sublethal ecotoxicological endpoint. This preliminary investigation highlights the need for further research into the responses of terrestrial Antarctic microinvertebrates to contaminants.
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  • 文章类型: Journal Article
    第1组(Dur-19,PF00477,LEA_5)晚期胚胎发生丰富的(LEA)蛋白存在于所有三个生命域的生物体中,古细菌,细菌,和Eukarya.令人惊讶的是,卤虫是唯一已知包括在其耐干燥生活史阶段表达第1组LEA蛋白的动物的属。圆二色性数据的生物信息学分析表明,第1组LEA蛋白AfLEA1在水合状态下令人惊讶地有序,并在干燥过程中经历了对来自A.franciscana的LEA蛋白描述的最明显的无序到有序转变之一。水合状态下的二级结构以无规卷曲(42%)和β-折叠(35%)为主,但在干燥时主要转化为α-螺旋(85%)。有趣的是,AfLEA1与其他蛋白质和核酸相互作用,和RNA在体外脱水过程中促进蛋白质与溶剂的液-液相分离(LLPS)。此外,AfLEA1在干燥过程中保护乳酸脱氢酶(LDH),但在干燥诱导的失活后无助于恢复LDH活性。在黑腹D.Kc167细胞中异位表达,与未转染的对照细胞相比,AfLEA1主要定位于胞质溶胶并且在干燥期间增加胞质溶胶粘度。此外,该蛋白在约38%的Kc167细胞的细胞质中形成小的生物分子缩合物。这些发现为以下假设提供了额外的证据:在脱水期间形成生物分子冷凝物以促进水胁迫耐受性可能是几组显示LLPS行为的LEA蛋白的共同特征。
    Group 1 (Dur-19, PF00477, LEA_5) Late Embryogenesis Abundant (LEA) proteins are present in organisms from all three domains of life, Archaea, Bacteria, and Eukarya. Surprisingly, Artemia is the only genus known to include animals that express group 1 LEA proteins in their desiccation-tolerant life-history stages. Bioinformatics analysis of circular dichroism data indicates that the group 1 LEA protein AfLEA1 is surprisingly ordered in the hydrated state and undergoes during desiccation one of the most pronounced disorder-to-order transitions described for LEA proteins from A. franciscana. The secondary structure in the hydrated state is dominated by random coils (42%) and β-sheets (35%) but converts to predominately α-helices (85%) when desiccated. Interestingly, AfLEA1 interacts with other proteins and nucleic acids, and RNA promotes liquid-liquid phase separation (LLPS) of the protein from the solvent during dehydration in vitro. Furthermore, AfLEA1 protects the enzyme lactate dehydrogenase (LDH) during desiccation but does not aid in restoring LDH activity after desiccation-induced inactivation. Ectopically expressed in D. melanogaster Kc167 cells, AfLEA1 localizes predominantly to the cytosol and increases the cytosolic viscosity during desiccation compared to untransfected control cells. Furthermore, the protein formed small biomolecular condensates in the cytoplasm of about 38% of Kc167 cells. These findings provide additional evidence for the hypothesis that the formation of biomolecular condensates to promote water stress tolerance during anhydrobiosis may be a shared feature across several groups of LEA proteins that display LLPS behaviors.
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