Combinatorial strategies

组合策略
  • 文章类型: Journal Article
    背景:Oritavancin是针对革兰氏阳性菌的新一代半合成糖肽抗生素,它是第一种也是唯一一种单剂量治疗方案治疗ABSSSI的抗生素。天然存在的糖肽A82846B是奥利万星的直接前体。然而,其应用受到低产率和同源杂质的阻碍。本研究建立了多步骤组合策略,合理构建A82846B优质高效生物合成体系,并对其发酵工艺进行系统优化,突破微生物发酵生产瓶颈。
    结果:首先,基于基因组测序和分析,我们删除了推定的竞争途径,并构建了一个更好的A82846B生产菌株,具有更干净的代谢背景,将A82846B产量从92mg/L提高到174mg/L。随后,在CRISPR-Cas12a系统的基础上引入了PhiC31整合酶系统。然后,通过构建的PhiC31系统过表达途径特异性调节因子StrR,将A82846B的发酵水平提高到226mg/L。此外,过表达糖基合成基因evaE将产量提高到332mg/L,这是由于中间体向目标产物的转化很大。最后,在发酵优化条件下,A82846B在15L发酵罐中的放大产量达到725mg/L,这是报道的A82846B的最高产量,没有产生同源杂质。
    结论:在包括阻断竞争性途径在内的方法中,插入位点特异性重组系统,超压调节器,过表达糖基合成基因并优化发酵工艺,开发了A82846B高水平生产的多步组合策略,构建高产菌株AO-6。本文采用的组合策略可广泛应用于提高其他微生物次生代谢产物的发酵水平,为构建高效的高值天然产物微生物细胞工厂提供参考。
    BACKGROUND: Oritavancin is a new generation of semi-synthetic glycopeptide antibiotics against Gram-positive bacteria, which served as the first and only antibiotic with a single-dose therapeutic regimen to treat ABSSSI. A naturally occurring glycopeptide A82846B is the direct precursor of oritavancin. However, its application has been hampered by low yields and homologous impurities. This study established a multi-step combinatorial strategy to rationally construct a high-quality and high-efficiency biosynthesis system for A82846B and systematically optimize its fermentation process to break through the bottleneck of microbial fermentation production.
    RESULTS: Firstly, based on the genome sequencing and analysis, we deleted putative competitive pathways and constructed a better A82846B-producing strain with a cleaner metabolic background, increasing A82846B production from 92 to 174 mg/L. Subsequently, the PhiC31 integrase system was introduced based on the CRISPR-Cas12a system. Then, the fermentation level of A82846B was improved to 226 mg/L by over-expressing the pathway-specific regulator StrR via the constructed PhiC31 system. Furthermore, overexpressing glycosyl-synthesis gene evaE enhanced the production to 332 mg/L due to the great conversion of the intermediate to target product. Finally, the scale-up production of A82846B reached 725 mg/L in a 15 L fermenter under fermentation optimization, which is the highest reported yield of A82846B without the generation of homologous impurities.
    CONCLUSIONS: Under approaches including blocking competitive pathways, inserting site-specific recombination system, overexpressing regulator, overexpressing glycosyl-synthesis gene and optimizing fermentation process, a multi-step combinatorial strategy for the high-level production of A82846B was developed, constructing a high-producing strain AO-6. The combinatorial strategies employed here can be widely applied to improve the fermentation level of other microbial secondary metabolites, providing a reference for constructing an efficient microbial cell factory for high-value natural products.
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  • 文章类型: Published Erratum
    [这修正了文章DOI:10.3389/fimmu.2023.1210044。].
    [This corrects the article DOI: 10.3389/fimmu.2023.1210044.].
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  • 文章类型: Journal Article
    免疫检查点抑制剂(ICIs)已成为肿瘤学的革命性范例,通过利用人体自身的免疫能力,为各种恶性肿瘤提供有效的武器库。在进步的旋风中,大量新的ICI出现了,使医生在快速发展的景观中保持礼貌是一项艰巨的任务。这项全面的审查仔细探讨了2022年和2023年期间临床研究和FDA批准的不断增长,展示了ICI在癌症治疗中的变质影响。深入研究跨不同癌症类型的关键3期试验的核心-包括肺癌,肾,黑色素瘤,以及更多-审查阐明了在提高患者预后方面取得的重大进展,伴随着在肿瘤界引起关注的新颖ICIs的揭幕。该分析扩展到受人尊敬的ESMO和ASCO公约上的著名演讲,提供ICI技术当代进步的全景。此外,审查强调了不断探索克服现有挑战的必要性,例如寻求可靠的预测性生物标志物和优化组合策略以克服耐药性和增强治疗效果。通过整体镜头,这篇文章阐述了ICI的巨大影响,标志着奥德赛中一个重要的时代,使癌症成为可征服的对手。
    Immune checkpoint inhibitors (ICIs) have emerged as a revolutionary paradigm in oncology, offering a potent arsenal against various malignancies by harnessing the body\'s own immunological prowess. In a whirlwind of advancement, an abundance of new ICIs have come to light, rendering it a Herculean task for physicians to remain au courant with the rapidly evolving landscape. This comprehensive review meticulously explores the crescendo of clinical investigations and FDA approvals that have come to light during 2022 and 2023, showcasing the metamorphic impact of ICIs in cancer therapeutics. Delving into the pith of pivotal Phase 3 trials across diverse cancer types - including lung, renal, melanoma, and more - the review illuminates the significant strides made in enhancing patient outcomes, alongside the unveiling of novel ICIs that have garnered attention in the oncological community. The analysis extends to the notable presentations at the esteemed ESMO and ASCO conventions, providing a panoramic view of the contemporary advancements in ICI technology. Furthermore, the review underscores the imperative of continuous exploration in overcoming the extant challenges, such as the quest for reliable predictive biomarkers and the optimization of combinatorial strategies to surmount resistance and augment therapeutic efficacy. Through a holistic lens, this article elucidates the monumental impact of ICIs, marking a significant epoch in the odyssey towards rendering cancer a conquerable adversary.
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  • 文章类型: Journal Article
    基于肽的不同策略可用于癌症治疗,特别是对抗肿瘤生长和疾病复发的进展。在过去的十年里,在癌症治疗策略的背景下,已经在不同的肿瘤模型中评估了基于肽的疫苗。选择用于癌症疫苗开发的肽可以分为两种主要类型:肿瘤相关抗原(TAA)和肿瘤特异性抗原(TSA)。被捕获,内化,由抗原呈递细胞(APC)处理并呈递至细胞介导的免疫。负载到I类MHC上的肽被CD8+T细胞的特定TCR识别,它们被激活以对呈递相同肽-MHC-I复合物的肿瘤细胞发挥细胞毒活性。这个过程被定义为主动免疫疗法,因为宿主的免疫系统要么从头激活,要么重新刺激,肿瘤特异性免疫反应,最终可能导致肿瘤消退。然而,虽然临床前数据经常显示出令人鼓舞的结果,治疗性癌症疫苗临床试验,迄今为止,包括基于肽的那些还没有提供令人满意的数据。基于肽的癌症疫苗的有限功效是几个因素的结果。包括识别特定的靶肿瘤抗原,肽的有限免疫原性和高度免疫抑制的肿瘤微环境(TME)。只有解决所有这些不同方面,才能开发出有效的癌症疫苗。本综述描述了每个这样的因素的现有技术。
    Different strategies based on peptides are available for cancer treatment, in particular to counter-act the progression of tumor growth and disease relapse. In the last decade, in the context of therapeutic strategies against cancer, peptide-based vaccines have been evaluated in different tumor models. The peptides selected for cancer vaccine development can be classified in two main type: tumor-associated antigens (TAAs) and tumor-specific antigens (TSAs), which are captured, internalized, processed and presented by antigen-presenting cells (APCs) to cell-mediated immunity. Peptides loaded onto MHC class I are recognized by a specific TCR of CD8+ T cells, which are activated to exert their cytotoxic activity against tumor cells presenting the same peptide-MHC-I complex. This process is defined as active immunotherapy as the host\'s immune system is either de novo activated or restimulated to mount an effective, tumor-specific immune reaction that may ultimately lead to tu-mor regression. However, while the preclinical data have frequently shown encouraging results, therapeutic cancer vaccines clinical trials, including those based on peptides have not provided satisfactory data to date. The limited efficacy of peptide-based cancer vaccines is the consequence of several factors, including the identification of specific target tumor antigens, the limited immunogenicity of peptides and the highly immunosuppressive tumor microenvironment (TME). An effective cancer vaccine can be developed only by addressing all such different aspects. The present review describes the state of the art for each of such factors.
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  • 文章类型: Journal Article
    骨髓来源的抑制细胞(MDSC)由于其强大的免疫抑制能力而成为肿瘤微环境(TME)中的主要负调节因子之一。MDSCs是骨髓中骨髓祖细胞异常分化的产物,抑制T细胞介导的免疫反应,自然杀伤细胞和树突状细胞;促进调节性T细胞和肿瘤相关巨噬细胞的产生;驱动免疫逃逸;并最终导致肿瘤进展和转移。在这次审查中,我们重点介绍了TME中MDSCs生物学的关键特征,这些特征正在作为肿瘤免疫治疗的潜在靶标进行探索。我们讨论了旨在将TME从免疫抑制重新编程为免疫刺激的疗法和方法,其阻止MDSC免疫抑制活性;促进MDSC分化;并影响肿瘤部位的MDSC募集和丰度。我们还总结了目前在确定合理的组合策略以提高癌症患者的临床疗效和预后方面的进展。通过深入了解和探讨TME中MDSCs产生和抑制的机制和特征。
    Myeloid-derived suppressor cells (MDSCs) are one of the major negative regulators in tumor microenvironment (TME) due to their potent immunosuppressive capacity. MDSCs are the products of myeloid progenitor abnormal differentiation in bone marrow, which inhibits the immune response mediated by T cells, natural killer cells and dendritic cells; promotes the generation of regulatory T cells and tumor-associated macrophages; drives the immune escape; and finally leads to tumor progression and metastasis. In this review, we highlight key features of MDSCs biology in TME that are being explored as potential targets for tumor immunotherapy. We discuss the therapies and approaches that aim to reprogram TME from immunosuppressive to immunostimulatory circumstance, which prevents MDSC immunosuppression activity; promotes MDSC differentiation; and impacts MDSC recruitment and abundance in tumor site. We also summarize current advances in the identification of rational combinatorial strategies to improve clinical efficacy and outcomes of cancer patients, via deeply understanding and pursuing the mechanisms and characterization of MDSCs generation and suppression in TME.
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  • 文章类型: Journal Article
    抗体-药物缀合物(ADC)已成为实体和血液恶性肿瘤的公认的抗癌药物,主要作为单一代理商获得监管部门批准。尽管广泛的临床前和临床努力开发合理的基于ADC的组合,到目前为止,只有有限数量的患者的生存率比标准治疗有所改善.ADC最吸引人的合作伙伴是那些对肿瘤细胞或其微环境提供累加或协同作用而没有不可接受的重叠毒性的合作伙伴。与抗血管生成化合物共同给药,HER2靶向药物,DNA损伤应答剂和免疫检查点抑制剂(ICI)代表了活跃的先行者。通过鉴定具有肿瘤特异性表达的靶标,改进的共轭技术,以及提供卓越治疗指数的新型接头和有效载荷,下一代ADC为组合方法带来了乐观。
    Antibody-drug conjugates (ADCs) have become a credentialled class of anticancer drugs for both solid and hematological malignancies, with regulatory approvals mainly as single agents. Despite extensive preclinical and clinical efforts to develop rational ADC-based combinations, to date only a limited number have demonstrated survival improvements over standard of care. The most appealing partners for ADCs are those that offer additive or synergistic effects on tumor cells or their microenvironment without unacceptable overlapping toxicities. Coadministration with antiangiogenic compounds, HER2-targeting drugs, DNA-damage response agents and immune checkpoint inhibitors (ICIs) represent active forerunners. Through the identification of targets with tumor-specific expression, improved conjugation technologies, and novel linkers and payloads offering superior therapeutic indices, the next generation of ADCs brings optimism to combinatorial approaches.
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  • 文章类型: Published Erratum
    [This corrects the article DOI: 10.3389/fonc.2021.689131.].
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  • 文章类型: Journal Article
    Cancer is an urgent public health issue with a very huge number of cases all over the world expected to increase by 2040. Despite improved diagnosis and therapeutic protocols, it remains the main leading cause of death in the world. Cancer stem cells (CSCs) constitute a tumor subpopulation defined by ability to self-renewal and to generate the heterogeneous and differentiated cell lineages that form the tumor bulk. These cells represent a major concern in cancer treatment due to resistance to conventional protocols of radiotherapy, chemotherapy and molecular targeted therapy. In fact, although partial or complete tumor regression can be achieved in patients, these responses are often followed by cancer relapse due to the expansion of CSCs population. The aberrant activation of developmental and oncogenic signaling pathways plays a relevant role in promoting CSCs therapy resistance. Although several targeted approaches relying on monotherapy have been developed to affect these pathways, they have shown limited efficacy. Therefore, an urgent need to design alternative combinatorial strategies to replace conventional regimens exists. This review summarizes the preclinical studies which provide a proof of concept of therapeutic efficacy of combinatorial approaches targeting the CSCs.
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  • 文章类型: Journal Article
    人γδ(γδ)T细胞代表具有HLA不受限制的靶细胞识别的非常规淋巴细胞的异质亚群。γδT细胞表现出适应性克隆限制的特异性,并对转化/损伤的细胞具有强大的细胞毒性功能。树突状细胞(DC)被证明是最有效的专职抗原呈递细胞(APC),能够诱导适应性免疫并独立于T细胞支持先天免疫应答。一些数据表明,γδT淋巴细胞与DC的串扰可以通过桥接先天免疫到适应性免疫在免疫应答的编排中起关键作用。在过去的十年里,DCs,以及γδT细胞,越来越多的临床兴趣,特别是作为癌症免疫疗法的单一疗法,即使具有不可预测的结果,主要是由于免疫抑制和/或肿瘤免疫逃逸。由于这些原因,必须探索新的疫苗策略,以达到癌症免疫疗法的全部潜力。基于DC的疫苗对γδT细胞的影响研究较少,和使用基于DC的疫苗与γδT细胞的组合方法可能促进长期肿瘤控制和针对逃逸肿瘤克隆的保护的强协同作用。这里,我们讨论了DC和γδT细胞之间相互作用的治疗潜力,以提高癌症疫苗接种。特别是,我们描述了这种组合方法最相关和更新的证据,包括使用唑来膦酸盐,白细胞介素-15和鱼精蛋白RNA,还展望未来的战略,如CAR疗法。
    Human gamma delta (γδ) T cells represent heterogeneous subsets of unconventional lymphocytes with an HLA-unrestricted target cell recognition. γδ T cells display adaptive clonally restricted specificities coupled to a powerful cytotoxic function against transformed/injured cells. Dendritic cells (DCs) are documented to be the most potent professional antigen-presenting cells (APCs) able to induce adaptive immunity and support the innate immune response independently from T cells. Several data show that the cross-talk of γδ T lymphocytes with DCs can play a crucial role in the orchestration of immune response by bridging innate to adaptive immunity. In the last decade, DCs, as well as γδ T cells, have been of increasing clinical interest, especially as monotherapy for cancer immunotherapy, even though with unpredictable results mainly due to immune suppression and/or tumor-immune escape. For these reasons, new vaccine strategies have to be explored to reach cancer immunotherapy\'s full potential. The effect of DC-based vaccines on γδ T cell is less extensively investigated, and a combinatorial approach using DC-based vaccines with γδ T cells might promote a strong synergy for long-term tumor control and protection against escaping tumor clones. Here, we discuss the therapeutic potential of the interaction between DCs and γδ T cells to improve cancer vaccination. In particular, we describe the most relevant and updated evidence of such combinatorial approaches, including the use of Zoledronate, Interleukin-15, and protamine RNA, also looking towards future strategies such as CAR therapies.
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  • 文章类型: Journal Article
    纳米医学的发展有望为解决与多药耐药(MDR)细菌相关的挑战提供创新方向。在过去的几十年里,尽管基于纳米技术的光疗已被开发用于抗菌治疗,因为它很少引起细菌耐药性,由于光源的组织穿透性差,单模式光疗的临床应用受到限制。因此,正在开发组合策略。在这次审查中,我们首先总结了目前的光疗剂,分为两个功能类别:有机光疗剂(例如,小分子光敏剂,载有小分子光敏剂的纳米粒子和基于聚合物的光敏剂)和无机光疗剂(例如,碳基纳米材料,金属基纳米材料,复合纳米材料和量子点)。然后是新兴的基于光疗的组合策略的发展,包括联合化疗,联合化学动力学疗法,结合气体疗法,和多种联合治疗,并进一步讨论了未来的发展方向。这篇综述的目的是强调光疗处理细菌感染的潜力,并提出联合治疗策略是解决单模光疗挑战的有效途径。
    The development of nanomedicine is expected to provide an innovative direction for addressing challenges associated with multidrug-resistant (MDR) bacteria. In the past decades, although nanotechnology-based phototherapy has been developed for antimicrobial treatment since it rarely causes bacterial resistance, the clinical application of single-mode phototherapy has been limited due to poor tissue penetration of light sources. Therefore, combinatorial strategies are being developed. In this review, we first summarized the current phototherapy agents, which were classified into two functional categories: organic phototherapy agents (e.g., small molecule photosensitizers, small molecule photosensitizer-loaded nanoparticles and polymer-based photosensitizers) and inorganic phototherapy agents (e.g., carbo-based nanomaterials, metal-based nanomaterials, composite nanomaterials and quantum dots). Then the development of emerging phototherapy-based combinatorial strategies, including combination with chemotherapy, combination with chemodynamic therapy, combination with gas therapy, and multiple combination therapy, are presented and future directions are further discussed. The purpose of this review is to highlight the potential of phototherapy to deal with bacterial infections and to propose that the combination therapy strategy is an effective way to solve the challenges of single-mode phototherapy.
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