Clinical Pharmacogenetics Implementation Consortium

  • 文章类型: Journal Article
    药物基因组学(PGx)可以促进向患者特异性药物方案的过渡,从而提高其疗效并降低毒性。这项研究的目的是评估PGx分类对药物吸收的重叠,分布,新陈代谢,美国食品和药物管理局(FDA)PGx标签和临床药物遗传学实施联盟(CPIC)数据库中与消除(ADME)相关的基因。在CPIC数据库中鉴定了FDA批准的药物和ADME基因的PGx标记。药物通过与ADME(药代动力学)相关基因的关联进行过滤,PGxFDA标签类,和CPIC证据水平。FDAPGx标签被归类为可采取行动,翔实,推荐测试,或需要测试,以及不同的CPIC证据水平,B,C,或D.从CPIC数据库中总共442对ADME和非ADME基因药物对中,273、55和48对因缺乏FDA标签而被排除在外,CPIC混合证据级别临时分类,和非ADME基因药物对,分别。66个ADME基因-药物对分为以下几类:10个(15%)信息,49(74%)可采取行动,6(9%)的测试建议,和1(2%)测试要求。CYP2D6是FDAPGx标记中最普遍的基因。从具有FDA和CPICPGx分类的ADME基因-药物对中,大多数药物是用于抑郁症的,癌症,和止痛药。带有FDAPGx标记的ADME基因-药物对与CPIC分类相当重叠;然而,大量的ADME基因-药物对只有CPIC证据水平,而没有FDA分类.PGx可操作标签是最常见的分类,CYP2D6是FDAPGx标记中最普遍的ADME基因。卫生专业人员可以通过分析和协调FDA标签和CPIC数据库,通过药物遗传学干预来影响治疗结果。
    Pharmacogenomics (PGx) can facilitate the transition to patient-specific drug regimens and thus improve their efficacy and reduce toxicity. The aim of this study was to evaluate the overlap of PGx classification for drug absorption, distribution, metabolism, and elimination (ADME)-related genes in the U.S. Food and Drug Administration (FDA) PGx labeling and in the Clinical Pharmacogenetics Implementation Consortium (CPIC) database. FDA-approved drugs and PGx labeling for ADME genes were identified in the CPIC database. Drugs were filtered by their association with ADME (pharmacokinetics)-related genes, PGx FDA labeling class, and CPIC evidence level. FDA PGx labeling was classified as either actionable, informative, testing recommended, or testing required, and varying CPIC evidence levels as either A, B, C, or D. From a total of 442 ADME and non-ADME gene-drug pairs in the CPIC database, 273, 55, and 48 pairs were excluded for lack of FDA labeling, mixed CPIC evidence level provisional classification, and non-ADME gene-drug pairs, respectively. The 66 ADME gene-drug pairs were classified into the following categories: 10 (15%) informative, 49 (74%) actionable, 6 (9%) testing recommended, and 1 (2%) testing required. CYP2D6 was the most prevalent gene among the FDA PGx labeling. From the ADME gene-drug pairs with both FDA and CPIC PGx classification, the majority of the drugs were for depression, cancer, and pain medications. The ADME gene-drug pairs with FDA PGx labeling considerably overlap with CPIC classification; however, a large number of ADME gene-drug pairs have only CPIC evidence levels but not FDA classification. PGx actionable labeling was the most common classification, with CYP2D6 as the most prevalent ADME gene in the FDA PGx labeling. Health professionals can impact therapeutic outcomes via pharmacogenetic interventions by analyzing and reconciling the FDA labels and CPIC database.
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  • 文章类型: Journal Article
    背景:药物基因组学(PGx)研究了遗传变异对药物反应的影响。随着越来越多的临床遗传学实施联盟(CPIC)指南的发表,PGx正逐渐从单基因的反应性测试转向多基因的抢先性测试。但是PGx基因的特征,特别是国内的多样性,在中国不是很了解。
    方法:我们回顾性收集了来自中国20个省的22,918名参与者的抢先PGx测试数据,分析了等位基因的频率,药物基因的基因型和表型,预测每个参与者的药物反应,并在不同省份之间进行了比较。
    结论:在分析了31种药物的CPIC指南中的15种药物来源后,我们发现,99.97%的个体可能对至少一种药物有不典型的反应;参与者携带可操作的基因型,导致不典型的推荐剂量,中位数为8种药物.超过99%的参与者根据遗传因素建议减少华法林剂量。有20种药物的高风险比例从0.18%到58.25%,其中氯吡格雷的高危比例最高。此外,广东(RR=13.17,95CI:4.06~33.22,p<0.001)和广西(RR=23.44,95CI:8.83~52.85,p<0.001)的rasburicase高危比例明显高于各省。此外,我们观察到的20个省份的多样性表明,在中国不同地理区域的先发制人PGx检测可能需要更多地关注特定基因。这些结果强调了先发制人PGx检测的重要性,并为促进中国临床实施提供了必要的证据。
    BACKGROUND: Pharmacogenomics (PGx) examines the influence of genetic variation on drug responses. With more and more Clinical Pharmacogenetics Implementation Consortium (CPIC) guidelines published, PGx is gradually shifting from the reactive testing of single gene toward the preemptive testing of multiple genes. But the profile of PGx genes, especially for the intra-country diversity, is not well understood in China.
    METHODS: We retrospectively collected preemptive PGx testing data of 22,918 participants from 20 provinces of China, analyzed frequencies of alleles, genotypes and phenotypes of pharmacogenes, predicted drug responses for each participant, and performed comparisons between different provinces.
    CONCLUSIONS: After analyzing 15 pharmacogenes from CPIC guidelines of 31 drugs, we found that 99.97% of individuals may have an atypical response to at least one drug; the participants carry actionable genotypes leading to atypical dosage recommendation for a median of eight drugs. Over 99% of the participants were recommended a decreased warfarin dose based on genetic factors. There were 20 drugs with high-risk ratios from 0.18% to 58.25%, in which clopidogrel showed the highest high-risk ratio. In addition, the high-risk ratio of rasburicase in GUANGDONG (risk ratio (RR) = 13.17, 95%CI:4.06-33.22, p < 0.001) and GUANGXI (RR = 23.44, 95%CI:8.83-52.85, p < 0.001) were significantly higher than that in all provinces. Furthermore, the diversity we observed among 20 provinces suggests that preemptive PGx testing in different geographical regions in China may need to pay more attention to specific genes. These results emphasize the importance of preemptive PGx testing and provide essential evidence for promoting clinical implementation in China.
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  • 文章类型: Editorial
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  • 文章类型: Journal Article
    Many individuals ≥65 have multiple illnesses and polypharmacy. Primary care physicians prescribe >70% of their medications and renew specialists\' prescriptions. Seventy-five percent of all medications are metabolised by P450 cytochrome enzymes. This article provides unique detailed tables how to avoid adverse drug events and optimise prescribing based on two key databases. DrugBank is a detailed database of 13,000 medications and both the P450 and other complex pathways that metabolise them. The Flockhart Tables are detailed lists of the P450 enzymes and also include all the medications which inhibit or induce metabolism by P450 cytochrome enzymes, which can result in undertreatment, overtreatment, or potentially toxic levels. Humans have used medications for a few decades and these enzymes have not been subject to evolutionary pressure. Thus, there is enormous variation in enzymatic functioning and by ancestry. Differences for ancestry groups in genetic metabolism based on a worldwide meta-analysis are discussed and this article provides advice how to prescribe for individuals of different ancestry. Prescribing advice from two key organisations, the Dutch Pharmacogenetics Working Group and the Clinical Pharmacogenetics Implementation Consortium is summarised. Currently, detailed pharmacogenomic advice is only available in some specialist clinics in major hospitals. However, this article provides detailed pharmacogenomic advice for primary care and other physicians and also physicians working in rural and remote areas worldwide. Physicians could quickly search the tables for the medications they intend to prescribe.
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  • 文章类型: Comparative Study
    In this study, we aimed to understand the gap in coverage of pharmacogenomic (PGx) biomarkers between Japan and the US. PGx biomarkers (1) in the Clinical Pharmacogenetics Implementation Consortium (CPIC) guidelines; (2) that are CPIC level A or B; or (3) have US Food and Drug Administration (FDA)-approved drug labels, were determined. Subsequently, their coverage by US health insurance companies and the National Health Insurance (NHI) in Japan was investigated. We identified the top six health insurance companies with the largest market shares in the US and investigated the coverage for the PGx biomarkers by these health insurers, Medicare, Medicaid, and the NHI in Japan. We found that 19.9% of these biomarkers are covered by the six companies (10.0%, the CPIC guidelines; 25.1%, the FDA-approved drug labels). The coverage of somatic and germline biomarkers was respectively 86.8% and 8.5% in the US and 56.3% and 0.6% in Japan. A few germline PGx biomarkers are covered both in Japan and the US, but the coverage of both somatic and germline biomarkers was lower in Japan. Therefore, more coverage should be considered to improve patient outcomes after prescribing medications in Japan.
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