Circulating DNA

循环 DNA
  • 文章类型: Journal Article
    实体肿瘤组织传统上已用于癌症分子诊断。最近,血液或液体活检中的生物标志物评估已变得相关,因为它允许以侵入性较低且成本较高的方式进行基因分型.此外,在肿瘤样本不足的情况下,这是一种非常有用的技术。最近的数据表明,这种方法可以提供肿瘤的基线分子特征和在癌症治疗过程中出现的耐药性变化。在诊断应用方面,可用于肺癌临床使用的平台集中于循环DNA(ctDNA)的分离和检测,并且通常涵盖有限数量的基因突变,例如表皮生长因子受体(EGFR),Kirsten大鼠肉瘤病毒癌基因同源物(KRAS)和BRAF,以及间变性淋巴瘤激酶(ALK)重排。并行,有基于下一代测序(NGS)技术的血浆基因分型平台,范围更广,允许以更有效的方式同时研究多个基因。最近,液体活检的有希望的研究方案已经出现,如肿瘤治疗后微小残留病的早期诊断和评估。鉴于这些进步,了解液体活检的益处和局限性,以及对该技术在非小细胞肺癌(NSCLC)中的新适应症的新信息的认识,对于这种肿瘤患者制定更有效的管理策略至关重要。
    Solid tumour tissue has traditionally been used for cancer molecular diagnostics. Recently, biomarker assessment in blood or liquid biopsies has become relevant because it allows genotyping in a less invasive and costly manner. In addition, it is a very useful technique in cases with insufficient tumour samples. Recent data have shown that this method can provide the baseline molecular characteristics of the tumour and resistance changes that emerge during cancer treatment. In terms of diagnostic application, the platforms available for clinical use in lung cancer focus on the isolation and detection of circulating DNA (ctDNA) and generally cover a limited number of mutations in genes such as epidermal growth factor receptor (EGFR), Kirsten rat sarcoma viral oncogene homolog (KRAS) and BRAF, as well as anaplastic lymphoma kinase (ALK) rearrangements. In parallel, there are plasma genotyping platforms based on next-generation sequencing (NGS) techniques, which are much broader in scope, allowing multiple genes to be studied simultaneously in a more efficient manner. More recently, promising research scenarios for liquid biopsy have emerged, such as its utility for early diagnosis and evaluation of minimal residual disease after oncological treatment. In light of these advances, knowledge of the benefits and limitations of liquid biopsy, as well as awareness of emerging information on new indications for this technique in non-small cell lung cancer (NSCLC), are of paramount importance in developing more effective management strategies for patients with this neoplasm.
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  • 文章类型: Journal Article
    宫颈癌主要由致癌HPV引起。对于当地的高级阶段,标准治疗是放化疗(RTCT),然后是近距离放射治疗.然而,患者之间的预后仍然高度异质性.
    我们研究了HPV循环肿瘤DNA(ctDNA)与鳞状细胞癌抗原(SCC-A)在局部晚期宫颈癌中的预后价值。
    这项单中心回顾性研究纳入了IB3至IVA鳞状细胞宫颈癌的治愈意向患者。使用多重数字PCR测定法对诊断时收集的血清中的HPVctDNA进行定量,以同时检测8种HPV基因型。
    在包括的97名患者中,76例(78.4%)患者接受RTCT治疗,其次是近距离放射治疗57例(60%)。在诊断时59/97患者中检测到HPVctDNA(60.8%)。此检测与淋巴结浸润有关(p=0.04),但与肿瘤分期无关。诊断时SCC-A的高水平与肿瘤分期(p=0.008)和淋巴结浸润(p=0.012)相关。在单变量分析中,更好的无病生存率(DFS)与最佳RTCT方案相关(p=0.002),在诊断时暴露于近距离放射治疗(p=0.0001)和低SCC-A(连续分析,p=0.002)。探索性分析显示,在治疗结束时仍可检测到HPVctDNA的3/3患者(100%)复发,而在治疗结束时HPVctDNA阴性的6/22患者(27.3%)复发。
    在诊断局部晚期宫颈鳞状细胞癌时,HPVctDNA检测是常见的,并且与淋巴结侵犯有关,但不是DFS。治疗后HPVctDNA检测的预后价值值得特异性研究。
    UNASSIGNED: Cervical cancers are mainly caused by an oncogenic HPV. For locally advanced stages, the standard treatment is radio-chemotherapy (RTCT) followed by brachytherapy. Nevertheless, the prognosis remains highly heterogeneous between patients.
    UNASSIGNED: We investigated the prognostic value of HPV circulating tumor DNA (ctDNA) in locally advanced cervical cancers alongside that of Squamous Cell Carcinoma Antigen (SCC-A).
    UNASSIGNED: This single-center retrospective study included patients treated in curative intent for an IB3 to IVA squamous cell cervical cancer. Quantification of HPV ctDNA in serum collected at diagnosis was performed using a multiplex digital PCR assay for the simultaneous detection of 8 HPV genotypes.
    UNASSIGNED: Among the 97 patients included, 76 patients (78.4%) were treated by RTCT, followed by brachytherapy for 57 patients (60%). HPV ctDNA was detected in 59/97 patients at diagnosis (60.8%). This detection was associated with lymph node invasion (p=0.04) but not with tumor stage. A high level of SCC-A at diagnosis was associated with tumor stage (p=0.008) and lymph node invasion (p=0.012). In univariate analysis, better disease-free survival (DFS) was associated with optimal RTCT regimen (p=0.002), exposure to brachytherapy (p=0.0001) and a low SCC-A at diagnosis (continuous analysis, p=0.002). Exploratory analysis revealed that 3/3 patients (100%) whose HPV ctDNA was still detectable at the end of treatment relapsed, while 6/22 patients (27.3%) whose HPV ctDNA was negative at the end of treatment relapsed.
    UNASSIGNED: HPV ctDNA detection at diagnosis of locally advanced cervical squamous cell carcinomas is frequent and related to node invasion, but not to DFS. The prognostic value of HPV ctDNA detection after treatment warrants specific studies.
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  • 文章类型: Case Reports
    微卫星不稳定性(MSI)是一种遗传标记,可用于检测和治疗Lynch综合征(Sd)。尽管常规技术如免疫组织化学(IHC)和聚合酶链反应(PCR)是MSI检测的标准,下一代测序(NGS)的出现提供了新的可能性,尤其是循环DNA.
    我们介绍了一例26岁的LynchSd和BRAF突变的转移性结肠癌患者。常规方法和NGS之间的MSI结果不一致对制定治疗决策提出了挑战。随后的NGS分析显示了较高的MSI状态,导致参与免疫治疗试验,具有显著的临床反应。
    这个案例强调了全面的分子谱分析和强大的跨学科合作的重要性,尤其是在MSI结果不明确的情况下。
    UNASSIGNED: Microsatellite instability (MSI) is a genetic marker that is useful in the detection and treatment of Lynch syndrome (Sd). Although conventional techniques such as immunohistochemistry (IHC) and polymerase chain reaction (PCR) are the standards for MSI detection, the advent of next-generation sequencing (NGS) has offered new possibilities, especially with circulating DNA.
    UNASSIGNED: We present the case of a 26-year-old patient with Lynch Sd and a BRAF-mutated metastatic colon cancer. The discordant MSI results between the conventional methods and NGS posed challenges in making treatment decisions. Subsequent NGS analysis revealed a high MSI status, leading to participation in an immunotherapy trial, with remarkable clinical response.
    UNASSIGNED: This case emphasizes the importance of comprehensive molecular profiling and strong interdisciplinary collaborations, especially in cases with ambiguous MSI results.
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  • 文章类型: Letter
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  • 文章类型: Journal Article
    目的:评估ctDNA测量在不同时间间隔预测局部晚期直肠癌(LARC)患者在根治性切除前接受新辅助治疗的疗效和预后。
    方法:英语随机对照试验和观察性研究,在1946年至2024年1月发表的研究中,本研究纳入了ctDNA阳性和ctDNA阴性LARC患者在根治性手术切除前接受新辅助治疗的比较结果.搜索包括OvidMEDLINE,Embase,Cochrane中央对照试验登记册(中央),和Cochrane系统评价数据库(CDSR)。
    结果:分析了1022例患者的数据。术前ctDNA阳性的患者发生远处转移的风险是其5倍以上(RR[95%CI]5.03[3.31-7.65],p<0.001),而术后ctDNA阳性的患者的风险是其6倍以上(RR[95%CI]6.17[2.38-15.95],p<0.001)。基线时ctDNA状态之间没有显著关系,pre,或术后时期和pCR的实现(RR[95%CI]1.21[0.86-1.7],1.82[0.94-3.55],1.48[0.78-2.82],p分别=0.27、0.08和0.23)。然而,术前和术后ctDNA阳性的患者在治愈性治疗后总疾病复发的风险超过13和12倍(RR[95%CI]13.55[7.12-25.81],12.14[3.19-46.14],p<0.001),分别。
    结论:ctDNA可能指导LARC的治疗和随访,预测高危患者的疾病复发,允许个性化监测和治疗策略。标准化需要前瞻性研究。
    OBJECTIVE: To assess the efficacy of ctDNA measurement at different time intervals in predicting response and prognosis in patients diagnosed with locally advanced rectal cancer (LARC) who underwent neoadjuvant treatment prior to curative resection.
    METHODS: English language randomized controlled trials and observational studies, published from 1946 to January 2024, comparing outcomes between ctDNA-positive and ctDNA-negative patients with LARC undergoing neoadjuvant treatment prior to curative surgical resection were included in the search. The search included Ovid MEDLINE, Embase, Cochrane Central Register of Controlled Trials (CENTRAL), and the Cochrane Database of Systematic Reviews (CDSR).
    RESULTS: Data for 1022 patients were analysed. Patients with positive ctDNA in the preoperative period had more than five times the risk of developing distant metastasis (RR [95% CI] 5.03 [3.31-7.65], p < 0.001), while those with positive ctDNA in the postoperative period had more than six times the risk (RR [95% CI] 6.17 [2.38-15.95], p < 0.001). There was no significant relationship between ctDNA status at baseline, pre-, or postoperative periods and achievement of pCR (RR [95% CI] 1.21 [0.86-1.7], 1.82 [0.94-3.55], 1.48 [0.78-2.82], p = 0.27, 0.08, and 0.23, respectively). However, patients with positive ctDNA in the pre- and postoperative periods had more than 13 and 12 times the risk of overall disease relapse after curative-intent treatment (RR [95% CI] 13.55 [7.12-25.81], 12.14 [3.19-46.14], p < 0.001), respectively.
    CONCLUSIONS: ctDNA could potentially guide treatment and follow-up in LARC, predicting high-risk patients for disease relapse, allowing individualized surveillance and treatment strategies. Prospective studies are needed for standardization.
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  • 文章类型: Journal Article
    近几十年来,肥胖已成为全球健康问题。利用生物标志物提供了一种有前途的方法来全面监测肥胖及其相关健康状况的进展。这篇综述旨在综合关于cfDNA水平与肥胖之间相关性的现有证据,并提供关于使用cfDNA水平作为监测肥胖进展的工具的适用性的见解。搜索于2022年4月1日在PubMed和Embase进行。数据和其他相关信息已被提取并汇编成结构化表格,以供进一步分析。在筛选的1170篇文章中,本综述包括11篇文章,并进行了定性评估。结果表明,现有证据主要集中在三个人群上,包括健康的个体,癌症患者和孕妇。大多数对健康个体的研究确定了cfDNA水平与体重状态之间的显着关联,但在癌症患者中没有。在不同孕期的孕妇中观察到不同的结果。我们的综述总结了关于cfDNA水平与肥胖之间关联的一些初步证据。必须进行更大规模的队列研究,并进行全面评估,以检查cfDNA作为肥胖严重程度和疾病进展的生物标志物的适用性。
    Obesity has become a global health concern in recent decades. Utilizing biomarkers presents a promising approach to comprehensively monitor the progress of obesity and its associated health conditions. This review aims to synthesize the available evidence on the correlation between cfDNA level and obesity and to provide insights into the applicability of using cfDNA level as a tool for monitoring progression of obesity. Searches were performed in PubMed and Embase on April 1, 2022. Data and other relevant information were extracted and compiled into a structured table for further analysis. Among 1170 articles screened, 11 articles were included in this review and assessed qualitatively. The results demonstrated that existing evidence mainly focused on three populations, including healthy individuals, cancer patients and pregnant women. Majority of the studies on healthy individuals identified a significant association between cfDNA level and body weight status but not among cancer patients. Varying results were observed among pregnant women at different gestational trimesters. Our review summarized some preliminary evidence on the association between cfDNA level and obesity. More cohort studies in larger scale with comprehensive assessment have to be conducted to examine the applicability of cfDNA as a biomarker for severity and disease progression of obesity.
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  • 文章类型: Journal Article
    发现循环DNA(cirDNA)浓度升高与创伤或组织损伤有关,这表明手术后cirDNA释放涉及炎症或细胞死亡。我们进行了第一次展望,从癌症患者手术前24小时到治愈性手术后72小时,围手术期cirDNA和中性粒细胞胞外诱捕网(NETs)标志物动力学的多中心研究。
    我们检查了两种NETs蛋白标志物[髓过氧化物酶(MPO)和中性粒细胞弹性蛋白酶(NE)]的血浆水平,以及29个结肠中核(cir-nDNA)和线粒体(cir-mtDNA)来源的cirDNA水平,前列腺,乳腺癌患者和114名健康个体(HI)。
    这些标记物提供的协同分析信息表明:(i)NETs的形成有助于手术后的状况;(ii)术后cir-nDNA水平与结肠癌中的NE和MPO高度相关[r=0.60(P<0.001)和r=0.53(P<0.01),分别],但在前列腺癌和乳腺癌中没有;(iii)每种肿瘤类型都显示出特定的cir-nDNA和NETs标志物动力学模式,但总的来说,手术前后cir-nDNA的中值,NE,癌症患者的MPO明显高于HI患者。
    作为一个整体,我们的工作揭示了NETs形成与癌症患者围手术期cir-nDNA释放升高的关联,取决于手术程序或癌症类型。相比之下,在研究的围手术期,cir-mtDNA与NETs形成的相关性较差,这似乎表明了一种不同的释放机制或表明线粒体功能障碍。
    UNASSIGNED: Elevated circulating DNA (cirDNA) concentrations were found to be associated with trauma or tissue damage which suggests involvement of inflammation or cell death in post-operative cirDNA release. We carried out the first prospective, multicenter study of the dynamics of cirDNA and neutrophil extracellular trap (NETs) markers during the perioperative period from 24 h before surgery up to 72 h after curative surgery in cancer patients.
    UNASSIGNED: We examined the plasma levels of two NETs protein markers [myeloperoxidase (MPO) and neutrophil elastase (NE)], as well as levels of cirDNA of nuclear (cir-nDNA) and mitochondrial (cir-mtDNA) origin in 29 colon, prostate, and breast cancer patients and in 114 healthy individuals (HI).
    UNASSIGNED: The synergistic analytical information provided by these markers revealed that: (i) NETs formation contributes to post-surgery conditions; (ii) post-surgery cir-nDNA levels were highly associated with NE and MPO in colon cancer [r = 0.60 (P < 0.001) and r = 0.53 (P < 0.01), respectively], but not in prostate and breast cancer; (iii) each tumor type shows a specific pattern of cir-nDNA and NETs marker dynamics, but overall the pre- and post-surgery median values of cir-nDNA, NE, and MPO were significantly higher in cancer patients than in HI.
    UNASSIGNED: Taken as a whole, our work reveals the association of NETs formation with the elevated cir-nDNA release during a cancer patient\'s perioperative period, depending on surgical procedure or cancer type. By contrast, cir-mtDNA is poorly associated with NETs formation in the studied perioperative period, which would appear to indicate a different mechanism of release or suggest mitochondrial dysfunction.
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  • 文章类型: Journal Article
    液体活检已成为一种有价值的微创工具,用于实时检测各种癌症类型的临床可操作异常。它的适用性在前列腺癌领域尤其引人注目,新的治疗剂,包括那些靶向DNA修复系统的,正在开发中。尽管取得了这些进步,在有效筛查前列腺癌方面仍然存在挑战,加强风险分层,并确定治疗晚期疾病的最佳方法。因此,迫切需要改进的生物标志物,以帮助临床医生在这些背景下做出决策.无细胞DNA和细胞外囊泡分析已证明在诊断中的前景。预测,评估治疗反应,以及识别新出现的抵抗机制。然而,在将液体活检纳入常规临床实践之前,必须解决障碍。这些挑战包括分析前的考虑因素,如样品收集和储存,细胞外囊泡分离和富集的方法,以及需要增强对生成的测序数据的解释。这篇综述提供了通过血液液体活检管理前列腺癌的当前临床机会的全面概述。突出取得的进展,并承认仍然存在的挑战。此外,我们讨论了有效实施液体活检所需的下一步步骤,以指导前列腺癌的个性化治疗策略.
    Liquid biopsy has emerged as a valuable and minimally invasive tool for real-time detection of clinically actionable abnormalities across various cancer types. Its applicability is particularly compelling in the realm of prostate cancer, where novel therapeutic agents, including those targeting DNA repair systems, are under development. Despite these advancements, challenges persist in effectively screening for prostate cancer, enhancing risk stratification, and determining optimal approaches for treating advanced disease. Consequently, there is a pressing need for improved biomarkers to aid clinicians in decision-making within these contexts. Cell-free DNA and extracellular vesicle analysis have demonstrated promise in diagnosis, prognostication, assessment of treatment responses, and identification of emerging mechanisms of resistance. Nevertheless, obstacles must be addressed before liquid biopsies can be integrated into routine clinical practice. These challenges encompass preanalytical considerations such as sample collection and storage, methods of extracellular vesicle isolation and enrichment, and the need for enhanced interpretation of generated sequencing data. This review provides a comprehensive overview of current clinical opportunities in managing prostate cancer through blood-based liquid biopsy, highlighting the progress made, and acknowledging the challenges that remain. Additionally, we discuss the next steps required for the effective implementation of liquid biopsies in guiding personalized treatment strategies for prostate cancer.
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  • 文章类型: Published Erratum
    [这更正了文章DOI:10.3389/fmed.2023.1268748。].
    [This corrects the article DOI: 10.3389/fmed.2023.1268748.].
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  • 文章类型: Letter
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