Cellular Reprogramming Techniques

细胞重编程技术
  • 文章类型: Journal Article
    直接重编程为产生功能性内皮细胞(ECs)提供了新的突破,而无需中间干细胞或祖细胞状态。为心血管研究和治疗提供有前途的资源。ETV2是一种关键的转录因子,已被确定为指定内皮谱系的先驱因子。实现精确的ETV2诱导对于有效的内皮重编程至关重要,而维持重编程的细胞表型依赖于生长因子和小分子的特定组合。因此,我们在此提供了一个简单而全面的方案,用于从人真皮成纤维细胞(HDFs)产生两种不同类型的重编程ECs(rECs).早期的rECs表现出强大的新生血管形成特性,但缺乏成熟的EC表型,而晚期rECs表现出与人类出生后ECs的表型相似性,并且具有与早期rECs相似的新血管形成能力。两种细胞类型都可以来自人类体细胞,使它们适合个性化的疾病调查,药物发现,和疾病治疗。
    Direct reprogramming provides a novel breakthrough for generating functional endothelial cells (ECs) without the need for intermediate stem or progenitor states, offering a promising resource for cardiovascular research and treatment. ETV2 is a key transcription factor that has been identified as a pioneering factor for specifying endothelial lineage. Achieving precise ETV2 induction is essential for effective endothelial reprogramming, and maintaining the reprogrammed cellular phenotype relies on a specific combination of growth factors and small molecules. Thus, we hereby provide a straightforward and comprehensive protocol for generating two distinct types of reprogrammed ECs (rECs) from human dermal fibroblasts (HDFs). Early rECs demonstrate a robust neovascularization property but lack the mature EC phenotype, while late rECs exhibit phenotypical similarity to human postnatal ECs and have a neovascularization capacity similar to early rECs. Both cell types can be derived from human somatic source cells, making them suitable for personalized disease investigations, drug discovery, and disease therapy.
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  • 文章类型: News
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  • 文章类型: Journal Article
    目的:使用条件重编程(CR)建立和表征头颈部鳞状细胞癌(HNSCC)培养物的多样化文库。
    方法:患者参加了IRB批准的方案,以使用CR方法产生肿瘤细胞培养物。收集肿瘤和血液样本并记录临床信息。成功的CR培养物针对具有短串联重复基因分型的库存参考肿瘤进行了验证。细胞形态学用照片记录存档。评估临床和人口统计学因素与成功建立CR文化的关联。人乳头瘤病毒(HPV)基因分型,克隆生存,MTT测定,球体生长,在选定的培养物中进行全外显子组测序。
    结果:纳入了44例患者,31(70%)成功的CR文化,32%来自确定为黑人的患者,61%来自西班牙裔。所有主要的头颈部疾病部位都有代表,包括15例(48%)口腔癌和8例(26%)p16阳性口咽癌。西班牙裔种族和第一原发性肿瘤(vs.第二原发或复发性肿瘤)与成功的CR培养显着相关。HPV表达在CR培养物中是保守的,包括CR-024,其携带新的HPV-69血清型。CR培养物用于使用MTT测定法测试顺铂反应。先前的工作还表明,这些模型可用于评估对辐射的反应,并可移植到小鼠模型中。全外显子组测序表明CR培养物保留了肿瘤突变负荷和驱动突变。
    结论:CR培养在增殖HNSCC细胞方面非常成功。这项研究包括来自代表性不足的少数群体的高比例患者。
    方法:不适用喉镜,2024.
    OBJECTIVE: To establish and characterize a diverse library of head and neck squamous cell cancer (HNSCC) cultures using conditional reprogramming (CR).
    METHODS: Patients enrolled on an IRB-approved protocol to generate tumor cell cultures using CR methods. Tumor and blood samples were collected and clinical information was recorded. Successful CR cultures were validated against banked reference tumors with short tandem repeat genotyping. Cell morphology was archived with photodocumentation. Clinical and demographic factors were evaluated for associations with successful establishment of CR culture. Human papilloma virus (HPV) genotyping, clonogenic survival, MTT assays, spheroid growth, and whole exome sequencing were carried out in selected cultures.
    RESULTS: Forty four patients were enrolled, with 31 (70%) successful CR cultures, 32% derived from patients who identified as Black and 61% as Hispanic. All major head and neck disease sites were represented, including 15 (48%) oral cavity and 8 (26%) p16-positive oropharynx cancers. Hispanic ethnicity and first primary tumors (vs. second primary or recurrent tumors) were significantly associated with successful CR culture. HPV expression was conserved in CR cultures, including CR-024, which carried a novel HPV-69 serotype. CR cultures were used to test cisplatin responses using MTT assays. Previous work has also demonstrated these models can be used to assess response to radiation and can be engrafted in mouse models. Whole exome sequencing demonstrated that CR cultures preserved tumor mutation burden and driver mutations.
    CONCLUSIONS: CR culture is highly successful in propagating HNSCC cells. This study included a high proportion of patients from underrepresented minority groups.
    METHODS: Not Applicable Laryngoscope, 134:2748-2756, 2024.
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  • 文章类型: Journal Article
    心血管疾病仍然是住院的主要原因。虽然药物和血运重建技术可以提高患者的生存率和生活质量,他们不能帮助逆转MI损伤和心力衰竭。将体细胞直接重编程为心肌细胞和心脏祖细胞提供了一种新的细胞重编程方法,并为转化再生医学铺平了道路。直接重编程可以绕过多能阶段,具有非免疫原性细胞产物的潜在优势,降低致癌风险,对胚胎组织没有要求.直接重编程心肌细胞的过程首先是通过转录因子Gata4、Mef2c、和Tbx5(GMT)。然而,在过去的十年里,重要的工作集中在使用转录因子的混合物增强直接重编程,microRNAs,和小分子来实现心脏细胞的命运。这篇综述讨论了直接重编程的演变,在实现有效的心脏细胞命运转换方面的最新进展,并描述了分子水平的重编程机制。我们还探索了目前用于帮助递送重编程因子以提高效率的各种病毒和非病毒递送方法。然而,需要进一步的研究来克服分子和表观遗传障碍,以成功实现转化心脏再生疗法。
    Cardiovascular diseases remain a leading cause of hospitalization affecting approximately 38 million people worldwide. While pharmacological and revascularization techniques can improve the patient\'s survival and quality of life, they cannot help reversing myocardial infarction injury and heart failure. Direct reprogramming of somatic cells to cardiomyocyte and cardiac progenitor cells offers a new approach to cellular reprogramming and paves the way for translational regenerative medicine. Direct reprogramming can bypass the pluripotent stage with the potential advantage of non-immunogenic cell products, reduced carcinogenic risk, and no requirement for embryonic tissue. The process of directly reprogramming cardiac cells was first achieved through the overexpression of transcription factors such as GATA4, MEF2C, and TBX5. However, over the past decade, significant work has been focused on enhancing direct reprogramming using a mixture of transcription factors, microRNAs, and small molecules to achieve cardiac cell fate. This review discusses the evolution of direct reprogramming, recent progress in achieving efficient cardiac cell fate conversion, and describes the reprogramming mechanisms at a molecular level. We also explore various viral and non-viral delivery methods currently being used to aid in the delivery of reprogramming factors to improve efficiency. However, further studies will be needed to overcome molecular and epigenetic barriers to successfully achieve translational cardiac regenerative therapeutics.
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  • 文章类型: Journal Article
    肿瘤相关巨噬细胞(TAM)重编程是癌症免疫治疗的一种有前途的治疗方法;然而,由于用于TAM重编程的重组细胞因子的低生物活性,其功效仍然是适度的。mRNA治疗剂能够产生用于各种治疗目的的全功能蛋白质,但被指控其可持续性差。受混合动力汽车动能回收系统(KERS)的启发,细胞因子功效恢复系统(CERS)旨在通过携带治疗性细胞因子mRNA的纳米结构矿物涂层发挥的“捕获和稳定”机制来大幅增加基于mRNA的肿瘤免疫治疗的治疗指数。CERS通过将它们捕获到矿物涂层上以延长其治疗时间,显着回收了近40%表达的细胞因子。进一步使巨噬细胞极化以增强其杀肿瘤活性并激活对肿瘤的适应性免疫。值得注意的是,CERS产生的干扰素-γ(IFNγ)比重组IFNγ高42倍,显着降低TAM重编程所需的IFNγ剂量。在荷瘤小鼠中,IFNγ@CERS有效极化TAM以抑制骨肉瘤进展。当与PD-L1单克隆抗体联合使用时,IFNγ@CERS显着增强抗肿瘤免疫反应,并基本上防止恶性肺转移。因此,CERS介导的mRNA递送代表了增强用于肿瘤治疗的抗肿瘤免疫力的有希望的策略。本文受版权保护。保留所有权利。
    Tumor-associated macrophage (TAM) reprogramming is a promising therapeutic approach for cancer immunotherapy; however, its efficacy remains modest due to the low bioactivity of the recombinant cytokines used for TAM reprogramming. mRNA therapeutics are capable of generating fully functional proteins for various therapeutic purposes but accused for its poor sustainability. Inspired by kinetic energy recovery systems (KERS) in hybrid vehicles, a cytokine efficacy recovery system (CERS) is designed to substantially augment the therapeutic index of mRNA-based tumor immunotherapy via a \"capture and stabilize\" mechanism exerted by a nanostructured mineral coating carrying therapeutic cytokine mRNA. CERS remarkably recycles nearly 40% expressed cytokines by capturing them onto the mineral coating to extend its therapeutic timeframe, further polarizing the macrophages to strengthen their tumoricidal activity and activate adaptive immunity against tumors. Notably, interferon-γ (IFN-γ) produced by CERS exhibits ≈42-fold higher biological activity than recombinant IFN-γ, remarkably decreasing the required IFN-γ dosage for TAM reprogramming. In tumor-bearing mice, IFN-γ cmRNA@CERS effectively polarizes TAMs to inhibit osteosarcoma progression. When combined with the PD-L1 monoclonal antibody, IFN-γ cmRNA@CERS significantly boosts antitumor immune responses, and substantially prevents malignant lung metastases. Thus, CERS-mediated mRNA delivery represents a promising strategy to boost antitumor immunity for tumor treatment.
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  • 文章类型: Journal Article
    仅通过小分子进行的细胞重编程对于再生医学具有巨大的潜力。然而,化学重编程仍然是一个缓慢的过程和劳动密集型的,阻碍其广泛应用和潜在分子机制的研究。这里,通过筛选超过21,000个条件,我们开发了一种快速化学重编程(FCR)系统,这显著改善了细胞身份重新布线的动力学。我们发现FCR迅速通过了一条有趣的多能重编程路线,独特地通过发育滞育样状态过渡。此外,FCR关键地实现了使用多组学技术的全面表征,并揭示了意想不到的重要特征,包括关键调节因素和表观遗传动力学。特别是,通过抑制异染色质激活多能性相关的内源性逆转录病毒显著增强重编程.我们的研究提供了关键的见解,说明只有环境线索才足以快速恢复体细胞中的多能性,并在解决再生难题方面取得了显着的技术和概念进步。
    Cellular reprogramming by only small molecules holds enormous potentials for regenerative medicine. However, chemical reprogramming remains a slow process and labour intensive, hindering its broad applications and the investigation of underlying molecular mechanisms. Here, through screening of over 21,000 conditions, we develop a fast chemical reprogramming (FCR) system, which significantly improves the kinetics of cell identity rewiring. We find that FCR rapidly goes through an interesting route for pluripotent reprogramming, uniquely transitioning through a developmentally diapause-like state. Furthermore, FCR critically enables comprehensive characterizations using multi-omics technologies, and has revealed unexpected important features including key regulatory factors and epigenetic dynamics. Particularly, activation of pluripotency-related endogenous retroviruses via inhibition of heterochromatin significantly enhances reprogramming. Our studies provide critical insights into how only environmental cues are sufficient to rapidly reinstate pluripotency in somatic cells, and make notable technical and conceptual advances for solving the puzzle of regeneration.
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  • 文章类型: Journal Article
    在后生生物中,细胞竞争作为一种质量控制机制,以消除不适合的细胞,从而有利于其更强大的邻域1,2。这种机制有可能适应不良,促进侵袭性癌细胞的选择3-6。肿瘤是代谢活跃的,由基质细胞组成,但环境因素如何影响癌细胞竞争仍然是未知的。在这里,我们表明肿瘤相关巨噬细胞(TAM)可以通过饮食或基因重新编程来竞争过表达MYC的癌细胞。在乳腺癌小鼠模型中,MYC过表达导致mTORC1依赖的“赢家”癌细胞状态。低蛋白饮食抑制癌细胞中的mTORC1信号传导并减少肿瘤生长,由于TAM中转录因子TFEB和TFE3和mTORC1的激活,饮食来源的胞浆氨基酸通过GTPase激活蛋白GATOR1和FLCN被RagGTPases感知,以控制RagGTPases效应物,包括TFEB和TFE39-14。TAM中GATOR1的耗尽抑制了TFEB的激活,低蛋白饮食条件下的TFE3和mTORC1,导致加速的肿瘤生长;相反,TAM激活的TFEB中FLCN或RagGTP酶的消耗,TFE3和mTORC1在正常蛋白质饮食条件下,导致肿瘤生长减速。此外,TAM和癌细胞中的mTORC1过度激活及其竞争适应性取决于内溶酶体吞噬调节因子PIKfyve。因此,TAM中非经典吞噬介导的RagGTP酶非依赖性mTORC1信号控制TAM和癌细胞之间的竞争,它定义了一种新的先天免疫肿瘤抑制途径,可以作为癌症治疗的目标。
    In metazoan organisms, cell competition acts as a quality control mechanism to eliminate unfit cells in favour of their more robust neighbours1,2. This mechanism has the potential to be maladapted, promoting the selection of aggressive cancer cells3-6. Tumours are metabolically active and are populated by stroma cells7,8, but how environmental factors affect cancer cell competition remains largely unknown. Here we show that tumour-associated macrophages (TAMs) can be dietarily or genetically reprogrammed to outcompete MYC-overexpressing cancer cells. In a mouse model of breast cancer, MYC overexpression resulted in an mTORC1-dependent \'winner\' cancer cell state. A low-protein diet inhibited mTORC1 signalling in cancer cells and reduced tumour growth, owing unexpectedly to activation of the transcription factors TFEB and TFE3 and mTORC1 in TAMs. Diet-derived cytosolic amino acids are sensed by Rag GTPases through the GTPase-activating proteins GATOR1 and FLCN to control Rag GTPase effectors including TFEB and TFE39-14. Depletion of GATOR1 in TAMs suppressed the activation of TFEB, TFE3 and mTORC1 under the low-protein diet condition, causing accelerated tumour growth; conversely, depletion of FLCN or Rag GTPases in TAMs activated TFEB, TFE3 and mTORC1 under the normal protein diet condition, causing decelerated tumour growth. Furthermore, mTORC1 hyperactivation in TAMs and cancer cells and their competitive fitness were dependent on the endolysosomal engulfment regulator PIKfyve. Thus, noncanonical engulfment-mediated Rag GTPase-independent mTORC1 signalling in TAMs controls competition between TAMs and cancer cells, which defines a novel innate immune tumour suppression pathway that could be targeted for cancer therapy.
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  • 文章类型: Journal Article
    心脏病是全世界发病率和死亡率的首要原因。心脏的再生潜力有限;因此,心脏损伤后失去的心脏组织不能得到补充。常规疗法不能恢复功能性心脏组织。近几十年来,为了克服这一问题,再生医学受到了极大的关注。直接重编程是再生心脏医学中一种有前途的治疗方法,具有提供原位心脏再生的潜力。它包括将一种细胞类型直接转化为另一种细胞类型,避免通过中间多能状态过渡。在受伤的心脏组织中,该策略指导常驻非肌细胞(NMC)转分化为有助于恢复天然组织的成熟功能性心肌细胞.多年来,重编程方法的发展表明,NMC中几种内在因素的调节可以帮助实现原位直接心脏重编程。在NMC中,已经研究了内源性心脏成纤维细胞直接重编程为诱导心肌细胞和诱导心脏祖细胞的潜力,周细胞可以向内皮细胞和平滑肌细胞转分化。该策略已被表明在临床前模型中改善心脏功能并减少心脏损伤后的纤维化。这篇综述总结了居民NMC直接心脏重编程用于原位心脏再生的最新进展和进展。
    Cardiac diseases are the foremost cause of morbidity and mortality worldwide. The heart has limited regenerative potential; therefore, lost cardiac tissue cannot be replenished after cardiac injury. Conventional therapies are unable to restore functional cardiac tissue. In recent decades, much attention has been paid to regenerative medicine to overcome this issue. Direct reprogramming is a promising therapeutic approach in regenerative cardiac medicine that has the potential to provide in situ cardiac regeneration. It consists of direct cell fate conversion of one cell type into another, avoiding transition through an intermediary pluripotent state. In injured cardiac tissue, this strategy directs transdifferentiation of resident non-myocyte cells (NMCs) into mature functional cardiac cells that help to restore the native tissue. Over the years, developments in reprogramming methods have suggested that regulation of several intrinsic factors in NMCs can help to achieve in situ direct cardiac reprogramming. Among NMCs, endogenous cardiac fibroblasts have been studied for their potential to be directly reprogrammed into both induced cardiomyocytes and induced cardiac progenitor cells, while pericytes can transdifferentiate towards endothelial cells and smooth muscle cells. This strategy has been indicated to improve heart function and reduce fibrosis after cardiac injury in preclinical models. This review summarizes the recent updates and progress in direct cardiac reprogramming of resident NMCs for in situ cardiac regeneration.
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  • 文章类型: Journal Article
    体外重建人类细胞和器官系统对于疾病建模具有巨大的潜力,药物发现和再生医学。这篇简短概述的目的是概述过去几年在快速发展的细胞编程领域取得的令人印象深刻的进展。阐明用于解决神经系统疾病的各种细胞编程技术的优点和局限性,并评估它们对围产期医学的影响。
    Recreating human cell and organ systems in vitro has tremendous potential for disease modeling, drug discovery and regenerative medicine. The aim of this short overview is to recapitulate the impressive progress that has been made in the fast-developing field of cell programming during the past years, to illuminate the advantages and limitations of the various cell programming technologies for addressing nervous system disorders and to gauge their impact for perinatal medicine.
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  • 文章类型: News
    重新编程技术有一天会帮助人们吗?
    Will reprogramming technique one day help people?
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